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At least 667 records · Page 37

Assessing the Ability of Developmentally Precocious Estrogen Signaling to Recapitulate Ovarian Transcriptomes and Follicle Dynamics in Alligators from a Contaminated Lake

Concern has grown in recent decades over anthropogenic contaminants that interfere with the functioning of endocrine hormones. However, mechanisms connecting developmental processes to pathologies associated with endocrine-disrupting chemical (EDC) exposure are poorly understood in naturally exposed populations. We sought to a) characterize divergence in ovarian transcriptomic and follicular profiles between alligators originating from a historically EDC-contaminated site, Lake Apopka, and a reference site; b) test the ability of developmentally precocious estrogen exposure to recapitulate site-associated patterns of divergence; and c) test whether treatment with exogenous follicle-stimulating hormone (FSH) is capable of rescuing phenotypes associated with contaminant exposure and/or embryonic estrogen treatment. Alligators eggs were collected from a contaminated site and a reference site, and a subset of eggs from the reference site were treated with estradiol (E2) during embryonic development prior to gonadal differentiation. After hatching, alligators were raised under controlled laboratory settings for 5 months. Juveniles from both sites were divided and treated with exogenous FSH. Histological analyses and RNA-sequencing were conducted to characterize divergence in ovarian follicle dynamics and transcriptomes between sites, between reference and E2-treated animals, and between FSH-treated and nontreated animals. We observed broad site-of-origin divergence in ovarian transcriptomes and reductions in ovarian follicle density between juvenile alligators from Lake Apopka and the reference site. Treating embryos from the reference site with E2 overwhelmingly recapitulated transcriptional and histological alterations observed in Lake Apopka juveniles. Ovarian phenotypes observed in Lake Apopka alligators or resulting from estrogen treatment were only partially rescued by treatment with exogenous FSH. Recapitulation of ovarian abnormalities by precocious E2 revealed a relatively simple mechanism underlying contaminant-induced pathologies in a historical example of environmental endocrine disruption. Findings reported here support a model where the developmental timing of estrogen signaling has the potential to permanently alter ovarian organization and function.

59 BASIC BIOLOGICAL SCIENCES↗

Continuous automatic polarization channel stabilization from heterodyne detection of coexisting dim reference signals

Quantum networking continues to encode information in polarization states due to ease and precision. The variable environmental polarization transformations induced by deployed fiber need correction for deployed quantum networking. Here, we present a method for automatic polarization compensation (APC) and demonstrate its performance on a metropolitan quantum network. Designing an APC involves many design decisions as indicated by the diversity of previous solutions in the literature. Our design leverages heterodyne detection of wavelength-multiplexed dim classical references for continuous high-bandwidth polarization measurements used by newly developed multi-axis (non-)linear control algorithm(s) for complete polarization channel stabilization with no downtime. This enables continuous relatively high-bandwidth correction without significant added noise from classical reference signals. We demonstrate the performance of our APC using a variety of classical and quantum characterizations. Finally, we use C-band and L-band APC versions to demonstrate continuous high-fidelity entanglement distribution on a metropolitan quantum network with an average relative fidelity of 0.94 ± 0.03 for over 30 hrs.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Enhanced Signal Processing of Distributed Brillouin Fiber Sensors using a Decoupled Radial Basis Function Network

A novel decoupled radial basis function network (D-RBFN) is proposed to accelerate signal processing and address the big data challenges associated with ultra-long distance Brillouin optical time-domain analysis (BOTDA) systems. The proposed frame- work is demonstrated on a dataset measured over a 100 km distance using a bi-directional Raman assisted BOTDA system.

Venketeswaran, Abhishek↗

Millisecond-long suppression of spectroscopic optical signals using laser filamentation

Ultrashort laser pulse filamentation in air can extend the delivery of focused laser energy to distances greatly exceeding the Rayleigh length. In this way, remote measurements can be conducted using many standard methods of analytical spectroscopy. The performance of spectroscopic techniques can be enhanced by temporal gating, which rejects the unwanted noise and background. In the present work, we investigate the thermal relaxation of air in the wake of single-filament plasmas using shadowgraphy. Here, we demonstrate that the transient change in refractive index associated with relaxation of the gas can be used to reject both continuous and time-varying spectroscopic signals, including emission from laser-produced plasmas. This method can augment temporal gating of simple optical detectors.

47 OTHER INSTRUMENTATION↗

Cellular signaling within aged skeletal muscle reveals a dysregulated stress-induced remodeling response following volumetric muscle loss in female mice

Severe muscle trauma disrupts endogenous repair mechanisms, producing chronic functional deficits that are incompletely characterized in aged populations. This study investigated inflammatory, molecular, and physiological responses to volumetric muscle loss in young adult and aged female mice. Serum cytokine profiling revealed elevated baseline inflammation in aged animals and a blunted response to injury, with cytokines such as IL-6 increasing 4.4-fold in young versus 1.8-fold in aged mice at day 3 compared to baseline. By day 28 post-injury, histological analyses showed comparable reductions in muscle size and increases in fibrosis across ages. Despite these similar tissue-level outcomes, age-dependent differences emerged in downstream functional and molecular responses. Muscle functional testing demonstrated persistent force deficits independent of age but altered muscle relaxation kinetics in aged mouse muscles (p < 0.001), suggesting dysregulated excitation-contraction coupling. Additionally, mice displayed age-associated differences in post-injury limb loading. Global proteomic analyses further confirmed age-associated enrichment of complement and antigen-processing pathways alongside metabolic dysfunction (p < 0.05). Phosphoproteomic profiling revealed reduced basal kinase activity in the muscles of aged mice yet exaggerated injury-induced phosphorylation of Mapk1-associated phosphosites, indicating a dysregulated stress response. Collectively, these findings suggest that aged murine muscles function within a heightened inflammatory and perturbed kinase-signaling environment that may hinder the coordination of regenerative programs, underscoring the need for regenerative strategies that address age-specific molecular contexts to improve functional recovery across the lifespan.

Habing, Krista M.↗

Mountain Basin Controls on the Snow-to-Streamflow Signal: An AIC-Weighted Multiple Linear Regression Framework

A regression-based analysis quantifies how basin characteristics modulate the snow-to-streamflow signal. First, we use the ERA5-Land reanalysis gridded product (European Centre for Medium Range Weather Forecasts reanalysis 5 -Land component) for 4,655 hydrologic unit code - 10 (HUC10) mountain basins across the western United States (US) for water years 1987–2024. Linear regressions are performed for peak snow water equivalent (SWE) and annual streamflow for each mountain basin. Models use ordinary least squares in Python’s statsmodels package. After which, an Akaike Information Criterion (AIC)–weighted ensemble multiple linear regression (MLR) framework with 47 watershed traits is used to predict the linear regression coefficient of determination (r-squared) defining the ability of peak SWE to predict annual streamflow across all mountain basin. Predictor sets are constrained to avoid multicollinearity by excluding models with variance inflation factors (VIF) greater than 5. Mountain basin traits included in the MLR include seasonal climate, topography, vegetation type and structure, and bedrock geology. Accepted models are considered if their AIC is within 2.0 of the model with the minimum AIC, or best model. To compare predictor influence across acceptable models, we computed standardized regression coefficients. To evaluate structural redundancy among models, we constructed binary inclusion vectors for each acceptable model, denoting whether a predictor was present (1) or absent (0). Core predictor variables are defined as occurring in at least 67% of the acceptable models. For this regional analysis, only one model was found acceptable, with higher snow-to-streamflow translation (higher r-squared) occurring in colder mountain basins with higher relative winter precipitation, more snow accumulation and a lower fraction of annual precipitation that falls in the spring and summer. The second component of the data package uses previously published, high-resolution output from an integrated hydrological model of the East River watershed using the U.S. Geological Survey Groundwater and Surface water Flow model (GSFLOW, doi:10.15485/1998576). East River MLR expands upon the approach described above to explore the response of five streamflow metrics—annual streamflow, runoff efficiency, 7-day minimum flow, low-flow duration, and non-perennial stream fraction to snow system indicators including peak SWE, snow-covered area, snow disappearance date, and the fraction of basin area characterized by low-to-no snow, as well as seasonal precipitation and temperature, and annual hydrologic variables representing soil moisture, evapotranspiration (ET), the partitioning of incoming precipitation to evapotranspiration (ET/P), groundwater storage, and groundwater inflow to streams. MLR was done on all water years (P0: 1987-2024) and for each period as determined in the split analysis using pooled regression techniques (P1: 1987-2011 and P2: 2012-2024) to evaluate shifting predictor variable emphasis on streamflow generation. Results indicate that since 2012, peak SWE has lost statistical strength in its prediction of annual streamflow and runoff efficiency, and the indirect influence of spring temperature has emerged as critically important. Low-flow metrics remain largely influenced by soil moisture, vegetation water use and groundwater inflows with summer precipitation becoming a direct influence on minimum summer flow. Together, these data and Python-based analysis tools provide a framework for identifying the key watershed characteristics that control how streamflow responds to snow from year to year. The package also helps quantify uncertainty in statistical models and assess how snow–streamflow relationships vary across regions and over time. This dataset contains comma-separated values files (.csv), text files (.txt), python code files (.py), figure files (.png), and shapefiles (.cpg, .dbf, .prj, .sbn, .sbx, .shp, .xml). Further details on file contents and MLR execution can be found in the readme file and the FLMD files. Work was supported by the Watershed Function Science Focus Area at Lawrence Berkeley National Laboratory funded by the US Department of Energy, Office of Science, Biological and Environmental Research under Contract No. DE-AC02-05CH11231.

54 ENVIRONMENTAL SCIENCES↗

Search for Infrasound Signals in InSight Data Using Coupled Pressure/Ground Deformation Methods

The unprecedented quality and sampling rate of seismometer and pressure sensors of the InSight Mars mission allow us to investigate infrasound through its pressure and ground deformation signals. This study focuses on compliance effects induced by acoustic waves propagating almost horizontally close to the surface. The compliance of acoustic waves is first estimated using the compliance estimates from pressure perturbations moving at wind speed. Then, a marker of compliance events is used to detect events of ground deformation induced by pressure variations, in three frequency bands from 0.4 to 3.2 Hz, from InSight sol 180 to 690. Additional selection criteria are imposed on the detected events to focus on acoustic waves and to remove various noise sources (e.g., wind effects or seismometer artifacts). After an automated selection, the visual inspection of the records allows us to validate two infrasound candidates that cannot be related to pressure perturbations moving at wind speed nor to known noise sources. For our highest quality infrasound candidate, the relation between this event and a convective vortex occuring 10 s later is tested. The azimuth of the vortex position at the time of infrasound detection is not consistent with the arrival azimuth of the suspected infrasound inferred from the polarization of seismometer records, thus the link between these two phenomena cannot be demonstrated. Further investigations would require a better understanding of wind-related noise impacting InSight sensors and of the effects of lateral variations of subsurface mechanical properties on the ground deformations induced by atmospheric pressure variations.

58 GEOSCIENCES↗

PickerXL, A Large Deep Learning Model to Measure Arrival Times from Noisy Seismic Signals

Precisely measuring seismic arrival times is a labor-intensive task but is critical for both earthquake monitoring and subsurface imaging. Recently published deep learning models have demonstrated superior performance compared to traditional automatic approaches for picking arrival times. Although existing deep learning models have shown promising results, further advancements are necessary as their performance is not yet satisfactory especially when applied to new regions and station networks. Increasing model size has led to improved performance in other machine learning applications. Here, we aimed to investigate whether enlarging deep learning models can increase performance on accepted benchmarks. We trained three models of varying sizes, small (1X), medium (4X), and large (16X), using globally distributed local and regional earthquake signals and background noise waveforms from a benchmark dataset, Stanford Earthquake Dataset. Our results indicate that the largest model (PickerXL) outperforms both the smaller models and Seisbench implementation of the PhaseNet model, which has the same number of parameters as our small model. The PickerXL model’s enhanced capacity to extract complex patterns from seismograms contributes to its superior arrival picking abilities compared to the smaller model.

Chai, Chengping [Oak Ridge National Laboratory (OR↗

Analog Signal Multiplexing System for the Iota Proton Injector

The Fermilab Accelerator Science and Technology (FAST) Facility at FNAL is a dedicated research and development center focused on advancing particle accelerator technologies for future applications worldwide. Currently, a key objective of FAST Operations is to commission the 2.5 MeV IOTA Proton Injector (IPI) and enable proton injection into the Integrable Optics Test Accelerator (IOTA) storage ring. The low and medium-energy sections of the IPI include four frame-style dipole trims and two multi-function correctors with independently controlled coils, requiring readout of 32 analog channels for current and voltage monitoring in total. To reduce cost and optimize rack space within the PLC-based control system, a 32-to-4 analog signal multiplexing system was designed and implemented. This system enables real-time readback of excitation parameters from all magnetic correctors. This paper presents the design, construction, implementation, and performance of the multiplexing system.

MacLean, Daniel R. [Fermilab] (ORCID:0000000210103↗

SNEWPY: A Data Pipeline from Supernova Simulations to Neutrino Signals

Current neutrino detectors will observe hundreds to thousands of neutrinos from a Galactic supernovae, and future detectors will increase this yield by an order of magnitude or more. With such a data set comes the potential for a huge increase in our understanding of the explosions of massive stars, nuclear physics under extreme conditions, and the properties of the neutrino. However, there is currently a large gap between supernova simulations and the corresponding signals in neutrino detectors, which will make any comparison between theory and observation very difficult. SNEWPY is an open-source software package which bridges this gap. The SNEWPY code can interface with supernova simulation data to generate from the model either a time series of neutrino spectral fluences at Earth, or the total time-integrated spectral fluence. Data from several hundred simulations of core-collapse, thermonuclear, and pair-instability supernovae is included in the package. This output may then be used by an event generator such as sntools or an event rate calculator such as SNOwGLoBES. Additional routines in the SNEWPY package automate the processing of the generated data through the SNOwGLoBES software and collate its output into the observable channels of each detector. In this paper we describe the contents of the package, the physics behind SNEWPY, the organization of the code, and provide examples of how to make use of its capabilities.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Precision calibration of calorimeter signals in the ATLAS experiment using an uncertainty-aware neural network

The ATLAS experiment at the Large Hadron Collider explores the use of modern neural networks for a multi-dimensional calibration of its calorimeter signal defined by clusters of topologically connected cells (topo-clusters). The Bayesian neural network (BNN) approach not only yields a continuous and smooth calibration function that improves performance relative to the standard calibration but also provides uncertainties on the calibrated energies for each topo-cluster. The results obtained by using a trained BNN are compared to the standard local hadronic calibration and to a calibration provided by training a deep neural network. The uncertainties predicted by the BNN are interpreted in the context of a fractional contribution to the systematic uncertainties of the trained calibration. They are also compared to uncertainty predictions obtained from an alternative estimator employing repulsive ensembles.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Digital Signal Processing of Radar Pulse Echoes

Modern high-performance radar systems are employing ever-more Digital Signal Processing (DSP), replacing ever-more formerly analog components. Precisely predicting the performance of digital filters and correlators requires an awareness of some of the finer points and characteristics of digital filters. We examine a representative radar receiver DSP chain that is processing a Linear Frequency Modulated (LFM) chirp.

47 OTHER INSTRUMENTATION↗

Separating Climate Signals with Machine Learning

To better prepare for future changes in the water cycle, it is vital to understand the regional effects of anthropogenic climate change and internal climate variability on precipitation. With existing methods, there is uncertainty regarding the regional patterns of these climate processes. We propose using machine learning to decompose seasonal total and extreme precipitation (calculated by Risser et. al., 2019) into components caused by each of the following signals: anthropogenic forcing, internal variability, and modes of natural climate variability (such as El Niño/ Southern Oscillation, Atlantic Multidecadal Oscillation, and the Pacific North American teleconnection).

54 ENVIRONMENTAL SCIENCES↗

Signal-Based Fast Tripping Protection Schemes for Electric Power Distribution System Resilience

This report is a summary of a 3-year LDRD project that developed novel methods to detect faults in the electric power grid dramatically faster than today’s protection systems. Accurately detecting and quickly removing electrical faults is imperative for power system resilience and national security to minimize impacts to defense critical infrastructure. The new protection schemes will improve grid stability during disturbances and allow additional integration of renewable energy technologies with low inertia and low fault currents. Signal-based fast tripping schemes were developed that use the physics of the grid and do not rely on communication to reduce cyber risks for safely removing faults.

24 POWER TRANSMISSION AND DISTRIBUTION↗

LADSS Signal Processing: Lecture 3 [Slides]

Signals were recorded and synchronized in LPBF experiments. Pyrometry and Acoustic sensors were compared and combined. Intelligent feature combination leads to better predictions. Predictions are accurate over entire lasing pattern.

97 MATHEMATICS AND COMPUTING↗