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At least 667 records · Page 37

An empirical DNA-based identification of morphologically similar snappers (Lutjanus campechanus, Lutjanus purpureus) using a versatile bioinformatics workflow for the discovery and analysis of informative single-nucleotide polymorphisms

The commercially important speciesLutjanus campechanus(Northern/Gulf red snapper) andLutjanus purpureus(Southern/Caribbean red snapper) are the protagonists of a decade’s long taxonomic debate over their species delimitation, due in part to partial habitat overlap, extensive morphological similarity, and the lack of resolution when applying canonically reliable DNA barcoding approaches. In this study, we leveraged publicly available RAD-Seq data forL. campechanusandL. purpureusto identify species-informative single‐nucleotide polymorphisms (SNPs) at the genome scale that were successful in distinguishing the Northern and Southern red snappers, while also detecting individuals exhibiting introgression. This 4-step empirical approach demonstrates the value of applying novel bioinformatics pipelines to existing genome-scale data to maximize the distillation of informative subsets. Our results facilitate economically relevant species identification in addition to confirming or challenging species identifications for specimens with data in public databases. These findings and their applications will benefit future sustainability strategies and broader research questions surrounding these overfished and evolutionarily entangled snapper species.

Environmental Sciences & Ecology↗

Selection of CVD Diamond Crystals for X-ray Monochromator Applications Using X-ray Diffraction Imaging

A set of 20 single crystal diamond plates synthesized using chemical vapor deposition (CVD) was studied using X-ray diffraction imaging to determine their applicability as side-bounce (single-reflection) Laue monochromators for synchrotron radiation. The crystal plates were of optical grade (as provided by the supplier) with (001) nominal surface orientation. High dislocation density was found for all samples. Distortions in the crystal lattice were quantified for low-index Laue reflections of interests using rocking curve topography. Maps of effective radius of curvature in the scattering plane were calculated using spline interpolation of the rocking curve peak position across the studied plates. For several selected plates, nearly flat regions with large effective radius of curvature were found (R 0 ≳ 30 - 70 m, some regions as large as 1 × 4 mm 2 ). The average width of the rocking curve for these regions was found to be about 150 μ rad (r.m.s.). These observations suggest that the selected CVD diamond plates could be used as intermediate-bandwidth monochromators refocusing the radiation source to a specific location downstream with close to 1:1 distance ratio.

36 MATERIALS SCIENCE↗

Probing the Boundary between Classical and Quantum Mechanics by Analyzing the Energy Dependence of Single-Electron Scattering Events at the Nanoscale

The relation between the energy-dependent particle and wave descriptions of electron–matter interactions on the nanoscale was analyzed by measuring the delocalization of an evanescent field from energy-filtered amplitude images of sample/vacuum interfaces with a special aberration-corrected electron microscope. The spatial field extension coincided with the energy-dependent self-coherence length of propagating wave packets that obeyed the time-dependent Schrödinger equation, and underwent a Goos–Hänchen shift. The findings support the view that wave packets are created by self-interferences during coherent–inelastic Coulomb interactions with a decoherence phase close to Δφ = 0.5 rad. Due to a strictly reciprocal dependence on energy, the wave packets shrink below atomic dimensions for electron energy losses beyond 1000 eV, and thus appear particle-like. Consequently, our observations inevitably include pulse-like wave propagations that stimulate structural dynamics in nanomaterials at any electron energy loss, which can be exploited to unravel time-dependent structure–function relationships on the nanoscale.

36 MATERIALS SCIENCE↗

EARTH’S ROTATIONAL DECELERATION: DETERMINATION OF TIDAL FRICTION INDEPENDENT OF TIMESCALES

This paper determines Earth's rotational deceleration without relying on atomic or ephemeris timescales. Earth's rotation defines the civil time standard called Universal Time (UT). Our previous paper did not examine tidal friction in depth when analyzing the timescale divergence between UT and International Atomic Time (TAI). We examine all available paleontological fossils and deposits for the direct measurements of Earth's past rotation rates, because that record includes all contributing effects. We examine paleontological reports that date Earth's rotation rate using corals, bivalves, brachiopods, rhythmites, and stromatolites. Contributions that vary Earth's moment of inertia, such as continental plate drifts, coastline changes, ice age formations, and viscous glacial rebounds, are superimposed with the secular deceleration. The average deceleration of Earth's rotation rate from all available fossil data is found to be (5.969 ± 1.762) × 10{sup −7} rad yr{sup −2}. Our value is 99.8% of the total rotational deceleration determined by Christodoulidis et al., who used artificial satellite data, and our value is 96.6% of the expected tidal friction value obtained by Stephenson and Morrison. Taking the derivative of conserved angular momentum, the predicted lunar orbital deceleration caused by the average rotational deceleration corresponds closely to lunar models. When evaluating the significant time gaps between UT and TAI, Earth's rotational deceleration is a minor contributing factor. Also, the secular deceleration rate is necessary to correctly date ancient astronomical events. We strongly encourage that more ocean paleontological evidence be found to supplement the record to separate the many periodic variations embedded in these data.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Analysis of flows inside quiescent prominences as captured by Hinode/solar optical telescope

Developing an understanding of how magnetic fields can become entangled in a prominence is important for predicting a possible eruption. This work investigates the kinetic energy and vorticity associated with plasma motion residing inside quiescent prominences (QPs). These plasma flow characteristics can be utilized to improve our understanding of how the prominence maintains a stable magnetic field configuration. Three different contrast-enhanced solar prominence observations from Hinode/Solar Optical Telescope were used to construct velocity maps—in the plane of the sky—via a Fourier local correlation tracking program. The resulting velocities were then used to perform the first-ever analysis of the two-dimensional kinetic energy and enstrophy spectra of a prominence. Enstrophy is introduced here as a means of quantifying the vorticity that has been observed in many QPs. The kinetic energy power spectral density (PSD) produced indices ranging from −1.00 to −1.60. There was a consistent anisotropy in the kinetic energy spectrum of all three prominences examined. Examination of the intensity PSD reveals that a different scaling relationship exists between the observed prominence structure and velocity maps. All of the prominences exhibited an inertial range of at least 0.8⩽k⩽2.0 rads Mm{sup −1}. Quasi-periodic oscillations were also detected in the centroid of the velocity distributions for one prominence. Additionally, a lower limit was placed on the kinetic energy density (ϵ ∼ 0.22–7.04 km{sup 2} s{sup −2}) and enstrophy density (ω ∼ 1.43–13.69 × 10{sup −16} s{sup −2}) associated with each prominence.

79 ASTRONOMY AND ASTROPHYSICS↗

Baryon loading efficiency and particle acceleration efficiency of relativistic jets: cases for low luminosity BL Lacs

Relativistic jets launched by supermassive black holes, so-called active galactic nuclei (AGNs), are known as the most energetic particle accelerators in the universe. However, the baryon loading efficiency onto the jets from the accretion flows and their particle acceleration efficiencies have been veiled in mystery. With the latest data sets, we perform multi-wavelength spectral analysis of quiescent spectra of 13 TeV gamma-ray detected high-frequency-peaked BL Lacs (HBLs) following one-zone static synchrotron self-Compton (SSC) model. We determine the minimum, cooling break, and maximum electron Lorentz factors following the diffusive shock acceleration (DSA) theory. We find that HBLs have P{sub B}/P{sub e}∼6.3×10{sup −3} and the radiative efficiency ϵ{sub rad,jet}∼6.7×10{sup −4}, where P {sub B} and P {sub e} is the Poynting and electron power, respectively. By assuming 10 leptons per one proton, the jet power relates to the black hole mass as P{sub jet}/L{sub Edd}∼0.18, where P{sub jet} and L{sub Edd} is the jet power and the Eddington luminosity, respectively. Under our model assumptions, we further find that HBLs have a jet production efficiency of η{sub jet}∼1.5 and a mass loading efficiency of ξ{sub jet}≳5×10{sup −2}. We also investigate the particle acceleration efficiency in the blazar zone by including the most recent Swift/BAT data. Our samples ubiquitously have particle acceleration efficiencies of η{sub g}∼10{sup 4.5}, which is inefficient to accelerate particles up to the ultra-high-energy-cosmic-ray (UHECR) regime. This implies that the UHECR acceleration sites should not be the blazar zones of quiescent low power AGN jets, if one assumes the one-zone SSC model based on the DSA theory.

79 ASTRONOMY AND ASTROPHYSICS↗

Faraday rotation measure synthesis of intermediate redshift quasars as a probe of intervening matter

There is evidence that magnetized material along the line of sight to distant quasars is detectable in the polarization properties of the background sources. The polarization properties appear to be correlated with the presence of intervening Mg ii absorption, which is thought to arise in outflowing material from star forming galaxies. In order to investigate this further, we have obtained high spectral resolution polarization measurements, with the Very Large Array and the Australia Telescope Compact Array, of a set of 49 unresolved quasars for which we have high quality optical spectra. These enable us to produce a Faraday Depth spectrum for each source, using Rotation Measure (RM) Synthesis. Our new independent radio data confirms that interveners are strongly associated with depolarization. We characterize the complexity of the Faraday Depth spectrum using a number of parameters and show how these are related, or not, to the depolarization and to the presence of Mg ii absorption along the line of sight. We argue that complexity and structure in the Faraday Depth distribution likely arise from both intervening material and intrinsically to the background source and attempt to separate these. We find that the strong radio depolarization effects associated with intervening material at redshifts out to z≈1 arise from inhomogeneous Faraday screens producing a dispersion in RM across individual sources of around 10 rad m{sup −2}. This is likely produced by disordered fields with strengths of at least 3 μG.

79 ASTRONOMY AND ASTROPHYSICS↗

Lamost observations in the Kepler field. Analysis of the stellar parameters measured with LASP based on low-resolution spectra

All 14 subfields of the Kepler field were observed at least once with the Large Sky Area Multi-Object Fiber Spectroscopic Telescope (lamost, Xinglong Observatory, China) during the 2012–2014 observation seasons. There are 88,628 reduced spectra with a signal-to-noise ratio in the g band (S/N{sub g}) ≥ 6 after the first round (2012–2014) of observations of the lamost– Kepler project (LK-project). By adopting the upgraded version of the lamost Stellar Parameter pipeline (lasp), we have determined the atmospheric parameters (T{sub eff}, logg, and [Fe/H]) and heliocentric radial velocity v {sub rad} for 51,406 stars with 61,226 spectra. Compared with the atmospheric parameters derived from both high-resolution spectroscopy and asteroseismology for common stars in Huber et al., an external calibration of lasp atmospheric parameters was made, leading to the determination of the external errors for giants and dwarfs. Multiple spectroscopic observations of the same objects in the LK-project were used to estimate the internal uncertainties of the atmospheric parameters as a function of S/N{sub g} with the unbiased estimation method. The lasp atmospheric parameters were calibrated based on both the external and internal uncertainties for the giants and dwarfs. A general statistical analysis of the stellar parameters leads to the discovery of 106 candidate metal-poor stars, 9 candidate very metal-poor stars, and 18 candidate high-velocity stars. Fitting formulae were obtained segmentally for both the calibrated atmospheric parameters of the LK-project and the Kepler Input Catalog (KIC) parameters with common stars. The calibrated atmospheric parameters and radial velocities of the LK-project will be useful for studying stars in the Kepler field.

79 ASTRONOMY AND ASTROPHYSICS↗

Direction-dependent Corrections in Polarimetric Radio Imaging. I. Characterizing the Effects of the Primary Beam on Full-Stokes Imaging

Next generation radio telescope arrays are being designed and commissioned to accurately measure polarized intensity and rotation measures (RMs) across the entire sky through deep, wide-field radio interferometric surveys. Radio interferometer dish antenna arrays are affected by direction-dependent (DD) gains due to both instrumental and atmospheric effects. In this paper, we demonstrate the effect of DD errors of the parabolic dish antenna array on the measured polarized intensities of radio sources in interferometric images. We characterize the extent of polarimetric image degradation due to the DD gains through wide-band VLA simulations of representative point-source simulations of the radio sky at L band (1–2 GHz). We show that at the 0.5 gain level of the primary beam there is significant flux leakage from Stokes I to Q , U amounting to 10% of the total intensity. We further demonstrate that while the instrumental response averages down for observations over large parallactic angle intervals, full-polarization DD correction is required to remove the effects of DD leakage. We also explore the effect of the DD beam on the RM signals and show that while the instrumental effect is primarily centered around 0 rad-m{sup −2}, the effect is significant over a broad range of RM requiring full polarization DD correction to accurately reconstruct the RM synthesis signal.

79 ASTRONOMY AND ASTROPHYSICS↗

AD Leonis: Radial Velocity Signal of Stellar Rotation or Spin–Orbit Resonance?

AD Leonis is a nearby magnetically active M dwarf. We find Doppler variability with a period of 2.23 days, as well as photometric signals: (1) a short-period signal, which is similar to the radial velocity signal, albeit with considerable variability; and (2) a long-term activity cycle of 4070 ± 120 days. We examine the short-term photometric signal in the available All-Sky Automated Survey and Microvariability and Oscillations of STars (MOST) photometry and find that the signal is not consistently present and varies considerably as a function of time. This signal undergoes a phase change of roughly 0.8 rad when considering the first and second halves of the MOST data set, which are separated in median time by 3.38 days. In contrast, the Doppler signal is stable in the combined High-Accuracy Radial velocity Planet Searcher and High Resolution Echelle Spectrometer radial velocities for over 4700 days and does not appear to vary in time in amplitude, phase, period, or as a function of extracted wavelength. We consider a variety of starspot scenarios and find it challenging to simultaneously explain the rapidly varying photometric signal and the stable radial velocity signal as being caused by starspots corotating on the stellar surface. This suggests that the origin of the Doppler periodicity might be the gravitational tug of a planet orbiting the star in spin–orbit resonance. For such a scenario and no spin–orbit misalignment, the measured vsin i indicates an inclination angle of 15.°5 ± 2.°5 and a planetary companion mass of 0.237 ± 0.047 M {sub Jup}.

79 ASTRONOMY AND ASTROPHYSICS↗

Observational Signatures of Planets in Protoplanetary Disks: Temperature Structures in Spiral Arms

High-resolution imaging of protoplanetary disks has unveiled a rich diversity of spiral structure, some of which may arise from disk-planet interaction. Using 3D hydrodynamics with β cooling to a vertically stratified background, as well as radiative-transfer modeling, we investigate the temperature rise in planet-driven spirals. In rapidly cooling disks, the temperature rise is dominated by a contribution from stellar irradiation, 0.3%–3% inside the planet radius but always < 0.5% outside. When cooling time equals or exceeds dynamical time, however, this is overwhelmed by hydrodynamic PdV work, which introduces a ~10%–20% perturbation within a factor of ~2 from the planet’s orbital radius. We devise an empirical fit of the spiral amplitude Δ(T)=(M{sub p}/M{sub th}){sup c}(f{sub PdV}e{sup -t{sub a}{sub r}{sub m}/t{sub c}}+f{sub rad}) to take into account both effects. Where cooling is slow, we find also that temperature perturbations from buoyancy spirals—a strictly 3D, nonisothermal phenomenon—become nearly as strong as those from Lindblad spirals, which are amenable to 2D and isothermal studies. Our findings may help explain observed thermal features in disks like TW Hydrae and CQ Tauri, and underscore that 3D effects have a qualitatively important effect on disk structure.

42 ENGINEERING↗

Scattering matrix for the interaction between solar acoustic waves and sunspots. I. Measurements

Assessing the interaction between solar acoustic waves and sunspots is a scattering problem. The scattering matrix elements are the most commonly used measured quantities to describe scattering problems. We use the wavefunctions of scattered waves of NOAAs 11084 and 11092 measured in the previous study to compute the scattering matrix elements, with plane waves as the basis. The measured scattered wavefunction is from the incident wave of radial order n to the wave of another radial order n′, for n=0--5. For a time-independent sunspot, there is no mode mixing between different frequencies. An incident mode is scattered into various modes with different wavenumbers but the same frequency. Working in the frequency domain, we have the individual incident plane-wave mode, which is scattered into various plane-wave modes with the same frequency. This allows us to compute the scattering matrix element between two plane-wave modes for each frequency. Each scattering matrix element is a complex number, representing the transition from the incident mode to another mode. The amplitudes of diagonal elements are larger than those of the off-diagonal elements. The amplitude and phase of the off-diagonal elements are detectable only for n−1⩽n{sup ′}⩽n+1 and −3Δk⩽δk{sub x}⩽3Δk, where δk{sub x} is the change in the transverse component of the wavenumber and Δk = 0.035 rad Mm{sup −1}.

79 ASTRONOMY AND ASTROPHYSICS↗

Shock Acceleration Model for the Toothbrush Radio Relic

Although many of the observed properties of giant radio relics detected in the outskirts of galaxy clusters can be explained by relativistic electrons accelerated at merger-driven shocks, significant puzzles remain. In the case of the so-called Toothbrush relic, the shock Mach number estimated from X-ray observations (M{sub X}≈1.2--1.5) is substantially weaker than that inferred from the radio spectral index (M{sub rad}≈2.8). Toward understanding such a discrepancy, we here consider the following diffusive shock acceleration (DSA) models: (1) weak-shock models with M{sub s}≲2 and a preexisting population of cosmic-ray electrons (CRe) with a flat energy spectrum, and (2) strong-shock models with M{sub s}≈3 and either shock-generated suprathermal electrons or preexisting fossil CRe. We calculate the synchrotron emission from the accelerated CRe, following the time evolution of the electron DSA, and the subsequent radiative cooling and postshock turbulent acceleration (TA). We find that both models could reproduce reasonably well the observed integrated radio spectrum of the Toothbrush relic, but the observed broad transverse profile requires the stochastic acceleration by downstream turbulence, which we label “turbulent acceleration” or TA to distinguish it from DSA. Moreover, to account for the almost uniform radio spectral index profile along the length of the relic, the weak-shock models require a preshock region over 400 kpc with a uniform population of preexisting CRe with a high cutoff energy (≳40 GeV). Due to the short cooling time, it is challenging to explain the origin of such energetic electrons. Therefore, we suggest the strong-shock models with low-energy seed CRe (≲150 MeV) are preferred for the radio observations of this relic.

79 ASTRONOMY AND ASTROPHYSICS↗

An Inside Look at Sunspot Oscillations with Higher Azimuthal Wavenumbers

Solar chromospheric observations of sunspot umbrae offer an exceptional view of magnetohydrodynamic wave phenomena. In recent years, a wealth of wave signatures related to propagating magneto-acoustic modes have been presented, which demonstrate complex spatial and temporal structuring of the wave components. Theoretical modeling has demonstrated how these ubiquitous waves are consistent with an m = 0 slow magneto-acoustic mode, which is excited by trapped sub-photospheric acoustic (p-mode) waves. However, the spectrum of umbral waves is broad, suggesting that the observed signatures represent the superposition of numerous frequencies and/or modes. We apply Fourier filtering, in both spatial and temporal domains, to extract chromospheric umbral wave characteristics consistent with an m = 1 slow magneto-acoustic mode. This identification has not been described before. Angular frequencies of 0.037±0.007 rad s{sup −1} (2.1±0.4 deg s{sup −1}, corresponding to a period ≈170 s) for the m = 1 mode are uncovered for spatial wavenumbers in the range of 0.45<k<0.90 arcsec{sup −1} (5000−9000 km). Theoretical dispersion relations are solved, with corresponding eigenfunctions computed, which allows the density perturbations to be investigated and compared with our observations. Such magnetohydrodynamic modeling confirms our interpretation that the identified wave signatures are the first direct observations of an m = 1 slow magneto-acoustic mode in the chromospheric umbra of a sunspot.

79 ASTRONOMY AND ASTROPHYSICS↗

Kepler Data on KIC 7341653: A Nearby M Dwarf with Monster Flares and a Phase-coherent Variability

KIC 7341653 is one of several late-type M dwarfs observed by the main mission of Kepler with peculiar infrared colors placing them in the domain of suspected young stellar objects (YSO). It is likely associated with a powerful X-ray emitter with X-ray flares. Kepler light curves reveal two distinct types of activity: frequent flares lasting from less than 30 minutes to a few hours, and a periodic variability with a period of 0.5463441(7) days. The largest detected flare increased the flux in the Kepler passband by a factor of 2.8 and released an estimated 4 × 10{sup 34} erg of energy in the Kepler band. Segmented periodogram analysis reveals that the amplitude of the periodic variation was subject to secular changes, dropping from peak values around 20 ppt to below 5 ppt toward the end of the mission, while the phase varied periodically with an amplitude of 0.15 rad and period 362(3) days. Two possible interpretations of the phase periodicity are discussed: a migrating long-lived photospheric spot, and a Doppler frequency shift generated by a solar-mass faint companion, such as a white dwarf.

79 ASTRONOMY AND ASTROPHYSICS↗

Enhanced Polarized Emission from the One-parsec-scale Hotspot of 3C 84 as a Result of the Interaction with the Clumpy Ambient Medium

We present Very Long Baseline Array polarimetric observations of the innermost jet of 3C 84 (NGC 1275) at 43 GHz. A significant polarized emission is detected at the hotspot of the innermost restarted jet, which is located 1 pc south from the radio core. While the previous report presented a hotspot at the southern end of the western limb, the hotspot location has been moved to the southern end of the eastern limb. Faraday rotation is detected within an entire bandwidth of the 43 GHz band. The measured rotation measure (RM) is at most (6.3 ± 1.9) × 10{sup 5} rad m{sup −2} and might be slightly time variable on the timescale of a month by a factor of a few. Our measured RM and the RM previously reported by the CARMA and SMA observations cannot be consistently explained by the spherical accretion flow with a power-law profile. We propose that a clumpy/inhomogeneous ambient medium is responsible for the observed RM. Using an equipartition magnetic field, we derive the electron density of 2 × 10{sup 4} cm{sup −3}. Such an electron density is consistent with the cloud of the narrow line emission region around the central engine. We also discuss the magnetic field configuration from the black hole scale to the parsec scale and the origin of low polarization.

79 ASTRONOMY AND ASTROPHYSICS↗

On the Neutrino Distributions in Phase Space for the Rotating Core-collapse Supernova Simulated with a Boltzmann-neutrino-radiation-hydrodynamics Code

With the Boltzmann-radiation-hydrodynamics code, which we have developed to solve numerically the Boltzmann equations for neutrino transfer, the Newtonian hydrodynamics equations, and the Newtonian self-gravity simultaneously and consistently, in this work we simulate the collapse of a rotating core of the progenitor with a zero-age- main-sequence mass of 11.2 M ⊙ and a shellular rotation of $1\,\mathrm{rad}\,{{\rm{s}}}^{-1}$ at the center. We pay particular attention in this paper to the neutrino distribution in phase space, which is affected by the rotation. By solving the Boltzmann equations directly, we can assess the rotation-induced distortion of the angular distribution in momentum space, which gives rise to the rotational component of the neutrino flux. We compare the Eddington tensors calculated both from the raw data and from the M1-closure approximation. We demonstrate that the Eddington tensor is determined by complicated interplays of the fluid velocity and the neutrino interactions and that the M1-closure, which assumes that the Eddington factor is determined by the flux factor, fails to fully capture this aspect, especially in the vicinity of the shock. We find that the error in the Eddington factor reaches ~20% in our simulation. This is due not to the resolution but to the different dependence of the Eddington and flux factors on the angular profile of the neutrino distribution function, and hence modification to the closure relation is needed.

79 ASTRONOMY AND ASTROPHYSICS↗

Features of Accretion-phase Gravitational-wave Emission from Two-dimensional Rotating Core-collapse Supernovae

We explore the influence of progenitor mass and rotation on the gravitational-wave (GW) emission from core-collapse supernovae, during the postbounce, preexplosion, accretion phase. We present the results from 15 two-dimensional (2D) neutrino radiation-hydrodynamic simulations from initial stellar collapse to ~300 ms after core bounce. We examine the features of the GW signals for four zero-age main sequence (ZAMS) progenitor masses ranging from 12 M ⊙ to 60 M ⊙ and four core rotation rates from 0 to 3 rad s -1 . We find that GW strain immediately around core bounce is fairly independent of ZAMS mass and—consistent with previous findings—that it is more heavily dependent on the core angular momentum. At later times, all nonrotating progenitors exhibit loud GW emission, which we attribute to vibrational g-modes of the protoneutron star (PNS) excited by convection in the postshock layer and the standing accretion shock instability (SASI). We find that increasing rotation rates results in muting of the accretion-phase GW signal due to centrifugal effects that inhibit convection in the postshock region, quench the SASI, and slow the rate at which the PNS peak vibrational frequency increases. Finally, we verify the efficacy of our approximate general relativistic (GR) effective potential treatment of gravity by comparing our core bounce GW strains with the recent 2D GR results of other groups.

79 ASTRONOMY AND ASTROPHYSICS↗