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At least 667 records · Page 37

OmicsMLMentor: A Web Application for Guided Machine Learning Analysis of Omics Data

Expression-based omics technologies (e.g. proteomics, metabolomics, transcriptomics, etc.) increasingly rely on supervised and unsupervised machine learning (ML) models to find key biomolecules distinguishing conditions, identify natural groupings in biological data, or generate predictions for outcomes of interest. Fitting ML models to omics data presents several challenges, including handling missing data, selecting a normalization method, choosing a valid model, and optimizing hyperparameters, all requiring statistical programming skills to address these challenges. Thus, the open-source web application SLOPE was designed to lower the barrier to ML modeling for omics data. SLOPE supports the fitting of 15 ML models (10 supervised and 5 unsupervised) tailored to omics datasets, such as proteomics, metabolomics, lipidomics, and transcriptomics. SLOPE offers several omics-specific features, including methods for handling missingness (imputation, conversion, removal), normalization tests, ranking of models based on the structure of a user’s data and user input, and optimal hyperparameter selections using cross-validation splits. By streamlining ML workflows for omics analysis, SLOPE address critical gaps in existing online web tools, facilitating a broader adoption of these models for omics research. Here, SLOPE is applied to data from a lignin exposure study to highlight the workflow for fitting both supervised and unsupervised models to data.

lipidomics↗

Counterions under a Surface-Adsorbed Cationic Surfactant Monolayer: Structure and Thermodynamics

The surface adsorption of ionic surfactants is fundamental for many widespread phenomena in life sciences and for a wide range of technological applications. However, direct atomic-resolution structural experimental studies of noncrystalline surface-adsorbed films are scarce. Thus, even the most central physical aspects of these films, such as their charge density, remain uncertain. Consequently, theoretical models based on contradicting assumptions as for the surface films' ionization are widely used for the description and prediction of surface thermodynamics. We employ X-ray reflectivity to obtain the angstrom Ångström-scale surface-normal structure of surface-adsorbed films of the cationic surfactant cetyltrimethylammonium bromide (CTAB) in aqueous solutions at several different temperatures and concentrations. In conjunction with published neutron reflectivity data, we determine the surface-normal charge distribution due to the dissociated surfactants' headgroups. The distribution appears to be inconsistent with the Gouy-Chapman model yet consistent with a compact Stern layer model of condensed counterions. Here, the experimental surfactant adsorption thermodynamics conforms well to classical, Langmuir and Kralchevsky, adsorption models. Furthermore, the Kralchevsky model correctly reproduces the observed condensation of counterions, allowing the values of the adsorption parameters to be resolved, based on the combination of the present data and the published surface tension measurements.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Hydrolysis-Induced Morphology Evolution of Linear and Bottlebrush Block Copolymers in Thin Films with Acid Vapor or Photoacid Generators

The self-assembly of high-χ low-N block copolymers (BCPs) can give patterns with sub-10 nm full pitch, serving as a promising alternative to photolithographic methods. Here, in this work, we synthesized poly(solketal methacrylate)-block-polystyrene copolymers, PSM-b-PS, with various volume ratios of the two blocks. After hydrolysis of the PSM block into poly(glycerol monomethacrylate), PGM, the BCPs had both lamellar and cylindrical microdomain morphologies in the bulk phase and in thin films. In addition to our previously developed solid-state hydrolysis strategy involving trifluoroacetic acid vapor, we developed a new photoinduced solid-state hydrolysis using photoacid generators, PAGs, embedded within the polymer films. After exposure to UV followed by a postexposure baking or solvent vapor annealing, the BCPs transitioned from the disordered, phase-mixed state into laterally ordered cylindrical patterns. In comparison to linear BCPs that rely on a random copolymer layer to modify interfacial interactions with the substrate to promote an orientation of the microdomains normal to the interface, we found that the microdomains in bottlebrush multiblock copolymers oriented normal to the interface absent substrate modification due to the chain architecture.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

The Impact of Europium as a Fission Product Surrogate on Chromium Corrosion in Molten Chloride Salt

The rising interest in molten salts, both as thermal energy storage media and as high-temperature solvents for fissile materials in advanced nuclear reactors, has spurred significant growth in research on structural and functional salt-facing materials. Impurities, such as water, play a significant role in the degradation of materials in molten salt environments. Other impurities, such as fission products, are expected to accumulate in molten salts during normal reactor operation and can affect the properties of the salt and salt-facing materials. During normal reactor operation, rare-earth element species are expected to form as byproducts of fission reactions, potentially degrading or altering the performance of both structural and functional materials exposed to salts. Here, in this work, fission product surrogates, europium metal and EuCl 3 , were added to the KCl-MgCl 2 salt while exposing pure Cr specimens in the melt at 600 and 700 °C for 1000 h. Low reactivity was observed with the baseline salt, while both the Eu and EuCl 3 additions to the salt resulted in increased mass loss of Cr specimens. A capillary electrophoresis technique was developed to enable the detection of low parts-per-million (ppm) concentrations of europium (Eu) in chloride salt both before and after exposure of Cr metal. This technique provides a sensitive and reliable method for monitoring trace levels of Eu, which is critical for understanding the interactions and potential contamination effects in salt-facing materials during reactor operation. This quantification technique can be applied to other cationic and anionic contaminants in halide salts.

chloride salt↗

Conductive Thin Films over Large Areas by Supramolecular Self-Assembly

We report a “one-step” method for preparing conductive thin films with cylindrical microdomains oriented normal to the surface over large areas using the supramolecular assembly of poly(styrene-block-4-vinylpyridine) (PS19-b-P4VP 5 ) and 5,10,15,20-tetrakis(4-hydroxyphenyl)-21H,23H-porphine (HOTPP). HOTPP interacts with the P4VP block by hydrogen bonding between the hydroxyl group of HOTPP and pyridine ring of PS 19 -b-P4VP 5 , forming cylindrical P4VP(HOTPP) domains having an average diameter of ~17 nm in a PS matrix. Here, dynamic light scattering, contact angle, and in situ grazing incidence small-angle X-ray scattering measurements show a morphological transition from spherical micelles in solution to cylindrical microdomains oriented normal to the substrate surface during the drying process. From the dependence of current on voltage, an average current of ~4.0 nA is found to pass through a single microdomain, pointing to a promising route for organic semiconductor device applications.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Roll-to-Roll, Dual-Layer Slot Die Coating of Chitin and Cellulose Oxygen Barrier Films for Renewable Packaging

Cellulose and chitin are the two most abundant naturally produced biopolymers and are being extensively studied as candidates for renewable oxygen barrier films used in packaging. It has been shown that bilayers formed from cellulose nanocrystals (CNCs) and chitin nanofibers (ChNFs) exhibit oxygen barrier properties similar to polyethylene terephthalate (PET). However, this prior work explored only coating each layer individually in sequence through techniques such as spray coating. Here, we demonstrate the viability of dual-layer slot die coating of CNC/ChNF bilayers onto cellulose acetate (CA) substrates. The dual-layer slot die method enables significantly lower oxygen permeability versus spray coating while using a roll-to-roll system that applies the bilayer in a single pass. This work discusses suspension properties, wetting, and drying conditions required to achieve well-controlled ChNF/CNC bilayers. Spray-coated bilayer films were on average 25% thinner than the dual-layer bilayer film; however, the thickness-normalized oxygen permeability (OP) of the dual-layer-coated ChNF/CNC bilayer film on CA was 20 times better than that of the spray-coated bilayers. Additionally, it has been shown that ChNF contributes to the wetting and barrier properties. Values of OP for the slot die-coated bilayers under optimized drying conditions were as low as 1.2 cm 3 ∙μm∙m -2 ∙d -1 ∙kPa -1 , corresponding to a normalized oxygen transmission rate of 0.32 cm 3 ∙m -2 ∙d -1 at 23 °C and 50% relative humidity. It is also noted that the adhesive properties of the dual-layer coating are also improved when films are air-dried and that ChNF contributes to the wetting and barrier properties.

09 BIOMASS FUELS↗

Multifunctional Tunable Polymethacrylates for Enhanced Shear Stability and Wear Prevention

This paper describes the design, synthesis, and characterization of linear, polar, and non-polar polymethacrylates designed for use as lubricant viscosity index improvers with enhanced shear and anti-wear resistance. The polymers were prepared via Reversible Addition-Fragmentation Chain Transfer (RAFT) to obtain relatively low, narrow, molecular weights, with random polar moieties. The resulting polymers were evaluated as oil solutions to determine their viscosity index, shear stability performance, and antiwear characteristics. The polymers had molecular weights (Mw) ranging from 120-170 kDa, and the resulting viscosity indexes (VIs) in general tracked the Mw. Although the VIs were modest (140-189), all polymers displayed higher values than a commercial product designed for similar applications, both at 2% (w/w) and when kinematic viscosities (KVs) were normalized to the lowest KV100 of ~5cSt. One of the imidazole-containing polymers displayed an anomalously high VI for a low apparent Mw. As hypothesized, many of the polar polymers demonstrated substantial wear reduction compared to the non-polar homopolymers or a commercial benchmark. The low-molecular-weight imidazole-containing polymer produced less than 4% of the wear displayed by the commercial standard. The higher molecular weight polymers containing imidazole, hydroxy group and amino group also produced as little as 10% of the wear shown by the benchmark. The strategy demonstrated the benefit of low, narrow, molecular weight polymers to achieve good shear stability in viscosity modifiers while minimizing wear, rendering them suitable for fluid-power applications.

friction modifiers↗

Quantifying the Impact of Metal Population Distribution in MFI-Supported Mo Catalysts for Methane Dehydroaromatization

Precise evaluation of intrinsic kinetic behavior in Mo/MFI catalysts for methane dehydroaromatization (MDA) is confounded by variations in Mo dispersion and speciation, which are influenced by metal loading and zeolite acidity. This work advances the utility of H 2 -temperature programmed reduction (H 2 -TPR) for characterizing Mo/MFI catalysts by enabling quantitative comparison of MoO x populations distinguished by reduction behavior and linked to initial catalytic performance. A comprehensive H 2 reduction pathway is established through systematic H 2 - TPR studies varying catalyst composition (1–10 wt % Mo, Si/Al = 15, 40, ∞), supplemented by UV-Raman spectroscopy, X-ray powder diffraction, N 2 physisorption, NH 3 -TPD, and advanced spectroscopic analysis (in situ XAS with principal component analysis/multivariate curve resolution—alternating least squares). Two low-temperature H 2 -TPR regions capture distinct Mo populations undergoing initial Mo(VI)→Mo(IV) reduction: a lower-temperature population (Mo-RI) associated primarily with highly dispersed, anchored MoO x species expected to predominantly reside within MFI channels, and a higher-temperature population (Mo-RII) corresponding to a broader set of MoO x species that becomes increasingly bulk-like/extrazeolitic at higher Mo loading. Quantification of these populations provides practical, kinetically relevant descriptors for comparing initial MDA rates across catalysts with varying Mo loading, Si/Al ratio, and MoO x heterogeneity. Application of lower-temperature Mo-RI estimates to kinetic measurements reveals a minimum threshold of ∼0.12 × 10 –3 mol Mo-RI/g cat , above which initial forward benzene rates normalized to this population converge despite differences in metal loading and zeolite Brønsted acidity. This threshold coincides with a transition toward a common C 2 -mediated benzene-forming regime, as indicated by approach-to-equilibrium analysis of methane-to-ethane, ethane-to-ethylene, and ethylene-to-benzene reaction steps. Above this threshold, normalized initial benzene rates are nearly invariant with increasing Mo-RII/Mo-RI population ratio, indicating that excess Mo-RII populations, including bulk-like/extrazeolitic MoO x domains present at higher loading, do not measurably suppress benzene formation associated with anchored and mostly channel-confined Mo population under the initial-rate conditions examined.

Mo/MFI↗

Toward Optimization of Polymer Electrolytes by Electrochemical Characterization: Poly(pentyl malonate) versus Poly(ethylene oxide)

Ion transport in two polymer electrolytes, poly­(ethylene oxide) (PEO) and poly­(pentyl malonate) (PPM), mixed with lithium bis­(trifluoromethanesulfonyl)­imide (LiTFSI) is studied in the vicinity of the limiting current. The experimental measurements are in quantitative agreement with theoretical predictions based on the concentrated solution theory. The properties of two electrolytes are compared using a new plot wherein the length-normalized limiting current, i lim L, is plotted as a function of the length-normalized potential drop, Φlim/L, in symmetric cells with electrolyte thickness, L. We propose that electrolyte design should aim to obtain the largest values of i lim L and the smallest values of Φlim/L. Using this criterion, PPM/LiTFSI is a better polymer electrolyte than PEO/LiTFSI. We hope that PPM/LiTFSI will serve as a benchmark for developing next-generation polymer electrolytes.

Lee, Jaeyong↗

Complexity of Fault Rupture and Fluid Leakage in Shale: Insights From a Controlled Fault Activation Experiment

Abstract We observed rupture growth caused by controlled fluid injections at 340‐m depth within a fault zone in the low‐permeability Opalinus Clay in the Mont Terri Underground Research Laboratory (Switzerland). The rupture mechanisms were evaluated using measurements of the three‐component borehole wall displacements and fluid pressure in two sections of the fault zone and located horizontally 3 m apart from each other. One section was set across a secondary segment of the fault and used for stepwise fluid injection intended to trigger rupture growth. The other section was set across the principal shear zone of the fault for monitoring. After stepwise pressure increase up to 5.95 MPa at injection, rupture initiated as slip activation, followed by an overall opening of the fault planes connected to the injection. After 19 s of continued injection, displacements arrived at the monitoring point on the principal shear zone. These displacements are about 2.4 times larger than in the secondary fault segment. Overall, the displacements corresponded to a normal fault activation. About 9 s after the displacement front arrived, a strong pressure increase of 4.17 MPa was measured at the monitoring point, indicating a hydraulic connection had formed along the initially very low permeability fault planes between the injection and the monitoring points. Our analyses highlight that the fault activation is consistent with the state of stress but that injection pressure must be close to the normal stress acting on the fault for permeability to be generated and for fluid leakage to occur.

Guglielmi, Yves↗

Nitrate Removal Across Ecogeomorphic Zones in Wax Lake Delta, Louisiana (USA)

Human activities have increased nitrate export from rivers, degrading coastal water quality. At deltaic river mouths, the flow of water through wetlands increases nitrate removal, and the spatial organization of removal rates influences coastal water quality. To understand the spatial distribution of nitrate removal in a river-dominated delta, in this study we deployed 23 benthic chambers across ecogeomorphic zones with varying elevation, vegetation, and sediment properties in Wax Lake Delta (Louisiana, USA) in June 2018. Regression analyses indicate that normalized difference vegetation index is a useful predictor of summertime nitrate removal. Mass transfer velocity were approximately three times greater on a vegetated submerged levee (13 mm hr –1 ), where normalized difference vegetation index was greatest, compared to other locations (4.6 mm hr –1 ). Two methods were developed to upscale nitrate removal across the delta. The flooded-delta method integrates spatially explicit potential removal rates across submerged portions of the delta and suggests that intermediate elevations on the delta—including submerged levees—are responsible for 70% of potential nitrate removal despite covering only 33% of the flooded area. The channel network method treats the delta as a network of river channels and suggests that although secondary channels are more efficient than primary channels at removing received nitrate, primary channels collectively contribute more to overall removal because they convey more of the total nitrate load. The two upscaling methods predict similar rates of nitrate removal, equivalent to less than 4% of nitrate entering the delta. To protect coastal waters against high nitrate loads, management policies should aim to reduce upstream nutrient loads.

54 ENVIRONMENTAL SCIENCES↗

Experimental Investigation of Hydraulic Fracturing and Stress Sensitivity of Fracture Permeability Under Changing Polyaxial Stress Conditions

Understanding and predicting fracture propagation and subsequent fluid flow characteristics is critical to geoenergy technologies that engineer and/or utilize favorable geological conditions to store or extract fluids from the subsurface. Fracture permeability decreases nonlinearly with increasing normal stress, but the relationship between shear displacement and fracture permeability is less well understood. We utilize the new Geo–Reservoir Experimental Analogue Technology (GREAT cell), which can apply polyaxial stress states and realistic reservoir temperatures and pressures to cylindrical samples and has the unique capability to alter both the magnitude and orientation of the radial stress field by increments of 11.25° during an experiment. We load synthetic analogue materials and real rock samples to stress conditions representative of 500–1,000 m depth, investigate the hydraulic stimulation process, and then conduct flow experiments while changing the fluid pressure and the orientation of the intermediate and minimum principal stresses. High–resolution circumferential strain measurements combined with fluid pressure data indicate fracture propagation can be both stable (no fluid pressure drop) and unstable (fluid pressure drop). The induced fractures exhibit both opening and shear displacements during their creation and/or during fluid flow with changing radial stress states. Flow tests during radial stress field rotation reveal that fracture normal effective stress has first–order control on fracture permeability but increasing fracture offset can lead to elevated permeabilities at maximum shear stress. Here, the results have implications for our conceptual understanding of fracture propagation as well as fluid flow and deformation around fractures.

58 GEOSCIENCES↗

The Relation of Environmental Conditions With Charge Structure in Central Argentina Thunderstorms

In this study we explored the environmental conditions hypothesized to induce a dominant charge structure in thunderstorms in the province of Cordoba, Argentina, during the RELAMPAGO-CACTI (Remote sensing of Electrification, Lightning, And Mesoscale/microscale Processes with Adaptive Ground Observations-Clouds, Aerosols, Complex Terrain Interactions) field campaigns. Hypothesized environmental conditions are thought to be related to small warm cloud residence time and warm rain growth suppression, which lead to high cloud liquid water contents in the mixed-phase zone, contributing to positive charging of graupel and anomalous charge structure storms. Data from radiosondes, a cloud condensation nuclei (CCN) ground-based instrument and reanalysis were used to characterize the proximity inflow air of storms with anomalous and normal charge structures. Consistent with the initial hypothesis, anomalous storms had small warm cloud depth caused by dry low-level humidity and low 0°C height. Anomalous storms were associated with lower CCN concentrations than normal storms, an opposite result to the initial expectation. High CAPE is not an important condition for the development of anomalous storms in Argentina, as no clear pattern could be found among the different parameters calculated for updraft proxy that would be consistent with the initial hypothesis.

54 ENVIRONMENTAL SCIENCES↗

Examining conditions supporting the development of anomalous charge structures in supercell thunderstorms in the Southeastern United States

Hypotheses regarding favorable conditions for anomalous charging have primarily resulted from studies within the Great Plains region of the United States, where the efficiency of warm precipitation processes is thought to be fundamental. Rare observations of anomalous charge structures in the Southeastern region challenge existing conceptual models used to explain anomalous charging. As a rigorous evaluation of conditions that support anomalous charge structures, environmental characteristics and bulk kinematic and microphysical properties of two normal and two anomalous supercell thunderstorms observed in the Southeast were compared in this paper. Within the anomalous supercells, greater quantities of precipitation ice were identified at higher altitudes and colder temperatures, suggesting a greater depth of riming growth and increased vertical transport of rimed hydrometeors. Deeper anomalous supercell updrafts were larger and stronger in the upper mixed-phase and glaciated regions. However, normal supercells were characterized by more robust low-level updrafts, resulting in comparable warm cloud residence times that suggested warm precipitation processes were not necessarily less efficient in the anomalous supercells. Indications of enhanced mixed-phase liquid water content in favor of anomalous charging were observed in the anomalous supercells, though contrasts in related environmental parameters were not as large as observed in other comparative studies. Anomalous supercell environments were characterized by increased instability, shallower warm cloud depth, as well as lower relative humidity in the 700 mb to 500 mb layer. Evidence of impacts from dry air in anomalous storm structures suggested that water vapor content may have affected particle-scale charge transfer in support of anomalous charge structure development.

54 ENVIRONMENTAL SCIENCES↗

Attribution of Snowpack Errors to Simulated Temperature and Precipitation in E3SMv1 Over the Contiguous United States

Abstract Snow water equivalent (SWE), temperature, and precipitation biases and trends are evaluated in the atmosphere‐land simulations of the Energy Exascale Earth System Model version 1 (E3SMv1) in comparison to the Community Earth System Model version 2 (CESM2) and two other models using the ground measurement‐based University of Arizona (UA) snow product. SWE, temperature, and precipitation biases are highest in magnitude in the Western contiguous United States (CONUS). SWE errors are attributed to temperature and precipitation through multiple linear regressions of normalized errors, the coefficients of which represent the sensitivities to temperature and precipitation errors. SWE errors are more sensitive to temperature errors throughout the CONUS. Model SWE and temperature trends are generally opposite from UA product trends in the Western CONUS. SWE trend errors are also attributed to temperature and precipitation trend errors using multiple linear regressions of normalized trend errors. SWE trend errors are more sensitive to those of precipitation at higher elevations (>1,500 m) in the Western CONUS in these simulations. Thus, the sensitivity to temperature and precipitation differ for SWE errors and its trend errors. Furthermore, the SWE trend errors are more sensitive to temperature and precipitation in the atmosphere‐ocean coupled simulations in which the atmosphere‐land is coupled to an active ocean model. These results suggest that both errors in simulated temperature and precipitation contribute to SWE errors.

Meteorology & Atmospheric Sciences↗

A Type–Curve Approach for Evaluating Aquifer Properties by Interpreting Shallow Strain Measured During Well Tests

Strains occur at shallow depths in response to pressure changes during well tests in an underlying aquifer, and recent developments in instrumentation have made it feasible to measure essentially the full strain tensor. Simulations using poroelastic analyses indicate that shallow normal strains are approximately proportional to the logarithm of time when a well is injecting into or pumping from a deep aquifer or reservoir. The drawdown is also a linear function of log time, as shown by the classic Cooper-Jacob type-curve analysis. The time when the semilog straight line intercepts the zero-strain axis is similar to the time determined from the Cooper-Jacob pressure analysis, and it can be used to estimate hydraulic diffusivity, suggesting that horizontal strain data can be used directly to estimate aquifer properties. This approach was validated using measurements from shallow (30-m deep) borehole strainmeters during an injection test at a 530-m-deep sandstone aquifer/reservoir in Oklahoma. The results show intercept times for the shallow normal strain data are essentially the same as for deep pressure data from an equivalent radial distance. The slopes of the semilog plots of the pressure and the strain increase at the same time, suggesting that they both respond to a lateral aquifer boundary. Significantly, though, strain was measured at shallow depths while the pressure data were measured at 530-m depth. This suggests that strain data from shallow depths could be an effective way to improve the characterization of an underlying aquifer.

54 ENVIRONMENTAL SCIENCES↗

The High-Frequency Signature of Slow and Fast Laboratory Earthquakes

Tectonic faults fail through a spectrum of slip modes, ranging from slow aseismic creep to rapid slip during earthquakes. Understanding the seismic radiation emitted during these slip modes is key for advancing earthquake science and earthquake hazard assessment. In this work, we use laboratory friction experiments instrumented with ultrasonic sensors to document the seismic radiation properties of slow and fast laboratory earthquakes. Stick-slip experiments were conducted at a constant loading rate of 8 μm/s and the normal stress was systematically increased from 7 to 15 MPa. We produced a full spectrum of slip modes by modulating the loading stiffness in tandem with the fault zone normal stress. Acoustic emission data were recorded continuously at 5 MHz. We demonstrate that the full continuum of slip modes radiate measurable high-frequency energy between 100 and 500 kHz, including the slowest events that have peak fault slip rates <100 μm/s. The peak amplitude of the high-frequency time-domain signals scales systematically with fault slip velocity. Stable sliding experiments further support the connection between fault slip rate and high-frequency radiation. Experiments demonstrate that the origin of the high-frequency energy is fundamentally linked to changes in fault slip rate, shear strain, and breaking of contact junctions within the fault gouge. Our results suggest that having measurements close to the fault zone may be key for documenting seismic radiation properties and fully understanding the connection between different slip modes.

58 GEOSCIENCES↗