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At least 667 records · Page 37

The mitochondrial Cu + transporter PiC2 (SLC25A3) is a target of MTF1 and contributes to the development of skeletal muscle in vitro

The loading of copper (Cu) into cytochrome c oxidase (COX) in mitochondria is essential for energy production in cells. Extensive studies have been performed to characterize mitochondrial cuproenzymes that contribute to the metallation of COX, such as Sco1, Sco2, and Cox17. However, limited information is available on the upstream mechanism of Cu transport and delivery to mitochondria, especially through Cu-impermeable membranes, in mammalian cells. The mitochondrial phosphate transporter SLC25A3, also known as PiC2, binds Cu + and transports the ion through these membranes in eukaryotic cells, ultimately aiding in the metallation of COX. We used the well-established differentiation model of primary myoblasts derived from mouse satellite cells, wherein Cu availability is necessary for growth and maturation, and showed that PiC2 is a target of MTF1, and its expression is both induced during myogenesis and favored by Cu supplementation. PiC2 deletion using CRISPR/Cas9 showed that the transporter is required for proliferation and differentiation of primary myoblasts, as both processes are delayed upon PiC2 knock-out. The effects of PiC2 deletion were rescued by the addition of Cu to the growth medium, implying the deleterious effects of PiC2 knockout in myoblasts may be in part due to a failure to deliver sufficient Cu to the mitochondria, which can be compensated by other mitochondrial cuproproteins. Co-localization and co-immunoprecipitation of PiC2 and COX also suggest that PiC2 may participate upstream in the copper delivery chain into COX, as verified by in vitro Cu + -transfer experiments. These data indicate an important role for PiC2 in both the delivery of Cu to the mitochondria and COX, favoring the differentiation of primary myoblasts.

59 BASIC BIOLOGICAL SCIENCES↗

Analysis of gas flow through a multilayer insulation system.

A theoretical investigation of gas flow inside a multilayer insulation system has been made for the case of the broadside pumping process. A set of simultaneous first-order differential equations for the temperature and pressure of the gas mixture was obtained by considering the diffusion mechanism of the gas molecules through the perforations on the insulation layers. A modified Runge-Kutta method was used for numerical experiment. The numerical stability problem was investigated. It has been shown that when the relaxation time is small compared with the time period over which the gas properties change appreciably, the set of differential equations can be replaced by a set of algebraic equations for solution. Numerical examples were given and comparison with experimental data was made.

Lin, J. T.↗

Thermal engineering research

A theoretical investigation of gas flow inside a multilayer insulation system has been made for the case of the broadside pumping process. A set of simultaneous first-order differential equations for the temperature and pressure of the gas mixture was obtained by considering the diffusion mechanism of the gas molecules through the perforations on the insulation layers. A modified Runge-Kutta method was used for numerical experiment. The numerical stability problem was investigated. It has been shown that when the relaxation time is small compared with the time period over which the gas properties change appreciably, the set of differential equations can be replaced by a set of algebraic equations for solution. Numerical examples were given, and comparisons with experimental data were made.

Shih, C. C.↗

A flight investigation of the reduction of aileron operating force by means of fixed tabs and differential linkage, with notes on linkage design

Flight tests were made to demonstrate the particularity of employing fixed tabs in conjunction with a suitably designed differential linkage to reduce the force required to operate ailerons. The tests showed the system to be practicable with tabs of the inset type. The relative ineffectiveness of attached tabs for changing the aileron floating angle rendered them unsuitable. Experience gained in the investigation has indicated that the use of the system is limited to maximum deflections of one aileron relative to the other of less than 30 degrees and that the differential linkage should always be designed on the basis of the highest probable floating angle.

Soule, H A↗

Automatic Differentiation of C++ Codes on Emerging Manycore Architectures with Sacado

Automatic differentiation (AD) is a well-known technique for evaluating analytic derivatives of calculations implemented on a computer, with numerous software tools available for incorporating AD technology into complex applications. However, a growing challenge for AD is the efficient differentiation of parallel computations implemented on emerging manycore computing architectures such as multicore CPUs, GPUs, and accelerators as these devices become more pervasive. In this work, we explore forward mode, operator overloading-based differentiation of C++ codes on these architectures using the widely available Sacado AD software package. In particular, we leverage Kokkos, a C++ tool providing APIs for implementing parallel computations that is portable to a wide variety of emerging architectures. Here we describe the challenges that arise when differentiating code for these architectures using Kokkos, and two approaches for overcoming them that ensure optimal memory access patterns as well as expose additional dimensions of fine-grained parallelism in the derivative calculation. We describe the results of several computational experiments that demonstrate the performance of the approach on a few contemporary CPU and GPU architectures. We then conclude with applications of these techniques to the simulation of discretized systems of partial differential equations.

97 MATHEMATICS AND COMPUTING↗

Light dilaton in rare meson decays and extraction of its CP property

Abstract The dilatonϕis a pseudo-Nambu-Goldstone boson associated with the spontaneous breaking of scale invariance in a nearly conformal theory, and couples to the trace of the stress-energy tensor. We analyze experimental constraints on a light dilaton with mass in the MeV–GeV range from rare meson decays. New model-independent inclusive bounds for theb→sϕtransition largely exclude the parameter space of a light dilaton that could explain the muong− 2 anomaly. Despite similarities between a dilaton and a Higgs-portal scalar, the dilaton-photon coupling is enhanced compared to the Higgs-portal scalar due to contributions from loops of the conformal sector. Consequently, the shortened lifetime of the dilaton relaxes bounds fromK→π+ invisible searches at the NA62 experiment and constraints from the Big Bang Nucleosynthesis. We utilize this fact to search for the dilaton signature at a lepton collider such as the ongoing Belle II experiment. Further, we demonstrate how to extract the CP property of the dilaton using the variation of the differential cross-section ofe + e − →e + e − ϕwith the azimuthal angle between the outgoing leptons.

Physics↗

NASA GeneLab RNA-seq consensus pipeline: Standardized processing of short-read RNA-seq data

With the development of transcriptomic technologies, we are able to quantify precise changes in gene expression profiles from astronauts and other organisms exposed to spaceflight. Members of NASA GeneLab and GeneLab-associated analysis working groups (AWGs) have developed a consensus pipeline for analyzing short-read RNA-sequencing data from spaceflight-associated experiments. The pipeline includes quality control, read trimming, mapping, and gene quantification steps, culminating in the detection of differentially expressed genes. This data analysis pipeline and the results of its execution using data submitted to GeneLab are now all publicly available through the GeneLab database. We present here the full details and rationale for the construction of this pipeline in order to promote transparency, reproducibility, and reusability of pipeline data; to provide a template for data processing of future spaceflight-relevant datasets; and to encourage cross-analysis of data from other databases with the data available in GeneLab.

59 BASIC BIOLOGICAL SCIENCES↗

Design improvements for a recirculating reactor: Enhanced temperature measurement and sample-isolated reactivity in steady-state kinetic studies

Building upon a previous recirculating reactor design [S.A. Tenney, K. Xie, J.R. Monnier, A. Rodriguez, R.P. Galhenage, S. Audrey, D.A. Chen, Rev. Sci. Instrum. 84, 104101 (2013)], we present significant improvements that address key limitations in steady-state kinetic measurements for heterogeneous catalysis. The enhanced reactor design features direct sample heating with a focused IR lamp and temperature measurement in direct contact with the sample, enabling more accurate temperature control and improved kinetic analysis. A critical advancement is the isolation of sample reactivity from reactor wall contributions, ensuring that only the sample contributes to measured reaction rates. This was a limitation in earlier designs where the entire reactor contributed to the observed reactivity. The system incorporates a bypass flow cell for direct comparison with powder catalysts under identical conditions using a standard plug-flow reactor configuration. We demonstrate these capabilities through CO oxidation experiments on Pt(111) single crystals and graphene-passivated Pt(111), highlighting the system's ability to differentiate catalytic activity in model systems and directly compare them with high surface area powder catalysts. This reactor is particularly suited for thin films and low surface area catalysts that are not effectively evaluated in traditional flow reactors, especially for samples with low numbers of active sites or slow reaction rates.

36 MATERIALS SCIENCE↗

Uncovering turbulent plasma dynamics via deep learning from partial observations

One of the most intensely studied aspects of magnetic confinement fusion is edge plasma turbulence which is critical to reactor performance and operation. Drift-reduced Braginskii two-fluid theory has for decades been widely applied to model boundary plasmas with varying success. Towards better understanding edge turbulence in both theory and experiment, we demonstrate that a novel multi-network physics-informed deep learning framework constrained by partial differential equations can accurately learn turbulent fields consistent with the two-fluid theory from partial observations of electron pressure which is not otherwise possible using conventional equilibrium models. Furthermore, this technique presents a novel paradigm for the advanced design of plasma diagnostics and validation of magnetized plasma turbulence theories in challenging thermonuclear environments.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Impact of Oxalic Acid Consumption and pH on the In Vitro Biological Control of Oxalogenic Phytopathogen Sclerotinia sclerotiorum

The phytopathogenic fungus Sclerotinia sclerotiorum has a wide host range and causes significant economic losses in crops worldwide. This pathogen uses oxalic acid as a virulence factor; for this reason, the degradation of this organic acid by oxalotrophic bacteria has been proposed as a biological control approach. However, previous studies on the potential role of oxalotrophy in biocontrol did not investigate the differential effect of oxalic acid consumption and the subsequent pH alkalinisation on fungal growth. In this study, confrontation experiments on different media using a wild-type (WT) strain of S. sclerotiorum and an oxalate-deficient mutant (strain Δoah) with the soil oxalotrophic bacteria Cupriavidus necator and Cupriavidus oxalaticus showed the combined effect of media composition on oxalic acid production, pH, and fungal growth control. Oxalotrophic bacteria were able to control S. sclerotiorum only in the medium in which oxalic acid was produced. However, the deficient Δoah mutant was also controlled, indicating that the consumption of oxalic acid is not the sole mechanism of biocontrol. WT S. sclerotiorum acidified the medium when inoculated alone, while for both fungi, the pH of the medium changed from neutral to alkaline in the presence of bacteria. Therefore, medium alkalinisation independent of oxalotrophy contributes to fungal growth control.

Estoppey, Aislinn (ORCID:0000000347410835)↗

Uncovering turbulent plasma dynamics via deep learning from partial observations

One of the most intensely studied aspects of magnetic confinement fusion is edge plasma turbulence which is critical to reactor performance and operation. Drift-reduced Braginskii two-fluid theory has for decades been widely applied to model boundary plasmas with varying success. Towards better understanding edge turbulence in both theory and experiment, we demonstrate that a novel multi-network physics-informed deep learning framework constrained by partial differential equations can accurately learn turbulent fields consistent with the two-fluid theory from partial observations of electron pressure which is not otherwise possible using conventional equilibrium models. This technique presents a novel paradigm for the advanced design of plasma diagnostics and validation of magnetized plasma turbulence theories in challenging thermonuclear environments.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Calculation of sonic boom signatures by bicharacteristic methods.

An improved method is described for correcting the zeroth order (free stream) characteristics to obtain a uniformly valid first order solution to the exact equations of motion for a compressible fluid. The method is based on constructing first order bicharacteristic lines from the system of ordinary differential equations belonging to the exact equation for the characteristic surface. Calculated sonic boom signatures are compared with experiments conducted at Langley Research Center on a cone-cylinder at Mach numbers 2.96, 3.83, and 4.63. Theory and experiment agree well over the entire Mach number range.

Davis, S. S.↗

Wall contraction in Bloch wall films.

The phenomenon of wall contraction characterized by a peak in the velocity-field relationship and a region of negative differential mobility is observed in uniaxial magnetic thin films of various magnetic properties by careful interrupted-pulse experiments. The observed results agree quite well with the theory for bulk samples when the extensive flux closure of thin film walls is accounted for by a suitable empirical scaling factor.

Bartran, D. S.↗

Quasi-geostrophic free mode models of long-lived Jovian eddies: Forcing mechanisms and crucial observational tests

Observations of Jupiter and Saturn long-lived eddies, such as Jupiter's Great Red Spot and White Ovals, are presently compared with laboratory experiments and corresponding numerical simulations for free thermal convection in a rotating fluid that is subject to horizontal differential heating and cooling. Difficulties in determining the essential processes maintaining and dissipating stable eddies, on the basis of global energy budget studies, are discussed; such difficulties do not arise in considerations of the flow's potential vorticity budget. On Jupiter, diabatically forced and transient eddy-driven flows primarily differ in the implied role of transient eddies in transporting potential vorticity across closed geostrophic streamlines in the time mean.

Read, P. L.↗

Detection of high-energy gamma radiation from quasar 3C 279 by the EGRET telescope on the Compton Gamma Ray Observatory

Intense gamma radiation has been observed from the direction of the quasar 3C 279 throughout the energy range from 30 MeV to over 5 GeV by the Energetic Gamma Ray Experiment Telescope (EGRET) during the period June 15-28, 1991. Its spectrum is well represented by a photon differential power-law exponent of 2.0 +/- 0.1, with a photon intensity above 100 MeV of (2.8 +/- 0.4) x 10 exp -6/sq cm s. For E is greater than 100 MeV, the 2-sigma upper limits were 1.0 x 10 exp -6/sq cm s in 1973 from the SAS 2 observations and 0.3 x 10 exp -6/sq cm s for the combined 1976, 1978, and 1980 COS B observations. Hence, there has been a large increase in high-energy gamma-ray intensity relative to the earlier times, as there has been in the radio, infrared, optical, and X-ray ranges. This source is the most distant and by far the most luminous gamma-ray source yet detected.

Hartman, R. C.↗

EGRET detection of high energy gamma rays from the gamma-ray burst of 3 May 1991

On May 3, 1991, the Energetic Gamma Ray Experiment Telescope on the Compton Gamma Ray Observatory detected a gamma-ray burst both in the energy measurement subsystem and independently in the spark chamber assembly. Six individual photons were detected in the spark chamber, allowing a determination of the burst arrival direction which was l(II) = 171.9 deg +/- 1.3 deg, b(II) = 5.3 deg +/- 1.1 deg. Three energy spectra were measured from 1 to 200 MeV; they were measured during the first second after the Burst and Transient Sources Experiment trigger, the next two seconds, and the subsequent four seconds. The first two spectra exhibit a similar differential spectra index of about -2.2 with no apparent high-energy cut-off. By the time of the third spectrum, an additional soft component is evident.

Schneid, E. J.↗

Retrieval of Polar Stratospheric Cloud Microphysical Properties from Lidar Measurements: Dependence on Particle Shape Assumptions

A retrieval algorithm has been developed for the microphysical analysis of polar stratospheric cloud (PSC) optical data obtained using lidar instrumentation. The parameterization scheme of the PSC microphysical properties allows for coexistence of up to three different particle types with size-dependent shapes. The finite difference time domain (FDTD) method has been used to calculate optical properties of particles with maximum dimensions equal to or less than 2 mu m and with shapes that can be considered more representative of PSCs on the scale of individual crystals than the commonly assumed spheroids. Specifically. these are irregular and hexagonal crystals. Selection of the optical parameters that are input to the inversion algorithm is based on a potential data set such as that gathered by two of the lidars on board the NASA DC-8 during the Stratospheric Aerosol and Gas Experiment 0 p (SAGE) Ozone Loss Validation experiment (SOLVE) campaign in winter 1999/2000: the Airborne Raman Ozone and Temperature Lidar (AROTEL) and the NASA Langley Differential Absorption Lidar (DIAL). The 0 microphysical retrieval algorithm has been applied to study how particle shape assumptions affect the inversion of lidar data measured in leewave PSCs. The model simulations show that under the assumption of spheroidal particle shapes, PSC surface and volume density are systematically smaller than the FDTD-based values by, respectively, approximately 10-30% and approximately 5-23%.

Reichardt, J.↗

Sounding of the Ion Energization Region: Resolving Ambiguities

Dartmouth College provided a single-channel high-frequency wave receiver to the Sounding of the Ion Energization Region: Resolving Ambiguities (SIERRA) rocket experiment launched from Poker Flat, Alaska, in January 2002. The receiver used signals from booms, probes, preamplifiers, and differential amplifiers provided by Cornell University coinvestigators. Output was to a dedicated 5 MHz telemetry link provided by WFF, with a small amount of additional Pulse Code Modulation (PCM) telemetry required for the receiver gain information. We also performed preliminary analysis of the data. The work completed is outlined below, in chronological order.

LaBelle, James↗