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Radar and Lidar Radar DEM

Using radar and lidar data, the aim is to improve 3D rendering of terrain, including digital elevation models (DEM) and estimates of vegetation height and biomass in a variety of forest types and terrains. The 3D mapping of vegetation structure and the analysis are useful to determine the role of forest in climate change (carbon cycle), in providing habitat and as a provider of socio-economic services. This in turn will lead to potential for development of more effective land-use management. The first part of the project was to characterize the Shuttle Radar Topography Mission DEM error with respect to ICESat/GLAS point estimates of elevation. We investigated potential trends with latitude, canopy height, signal to noise ratio (SNR), number of LiDAR waveform peaks, and maximum peak width. Scatter plots were produced for each variable and were fitted with 1st and 2nd degree polynomials. Higher order trends were visually inspected through filtering with a mean and median filter. We also assessed trends in the DEM error variance. Finally, a map showing how DEM error was geographically distributed globally was created.

remote sensing↗

Simulation of solar radiation absorption in vegetation canopies

A solar radiation canopy absorption model, including multiple scattering effects, was developed and tested for a lodgepole pine (Pinus contorta) canopy. Reflectance above the canopy, spectral transmittance to the ground layer, and geometric and spectral measurements of canopy elements were made. Relatively large differentials occurred in spectral absorption by canopy layers, especially in the photosynthetically active region, as a function of solar zenith angle. In addition, the proportion of total global irradiance absorbed by individual layers varied greatly as a function of solar zenith angle. However, absorption by the entire canopy system remained relatively constant.

Kimes, D. S.↗

Hierarchical modeling for image classification

As part of the California Integrated Remote Sensing System's (CIRSS) San Bernardino County Project, the use of data layers from a geographic information system (GIS) as an integral part of the Landsat image classification process was investigated. Through a hierarchical modeling technique, elevation, aspect, land use, vegetation, and growth management data from the project's data base were used to guide class labeling decisions in a 1976 Landsat MSS land cover classification. A similar model, incorporating 1976-1979 Landsat spectral change data in addition to other data base elements, was used in the classification of a 1979 Landsat image. The resultant Landsat products were integrated as additional layers into the data base for use in growth management, fire hazard, and hydrological modeling.

Likens, W.↗

A comparison between active and passive sensing of soil moisture from vegetated terrains

A comparison between active and passive sensing of soil moisture over vegetated areas is studied via scattering models. In active sensing three contributing terms to radar backscattering can be identified: (1) the ground surface scatter term; (2) the volume scatter term representing scattering from the vegetation layer; and (3) the surface volume scatter term accounting for scattering from both surface and volume. In emission three sources of contribution can also be identified: (1) surface emission; (2) upward volume emission from the vegetation layer; and (3) downward volume emission scattered upward by the ground surface. As ground moisture increases, terms (1) and (3) increase due to increase in permittivity in the active case. However, in passive sensing, term (1) decreases but term (3) increases for the same reason. This self conpensating effect produces a loss in sensitivity to change in ground moisture. Furthermore, emission from vegetation may be larger than that from the ground. Hence, the presence of vegetation layer causes a much greater loss of sensitivity to passive than active sensing of soil moisture.

Fung, A. K.↗

A comparison between active and passive sensing of soil moisture from vegetated terrains

A comparison between active and passive sensing of soil moisture over vegetated areas is studied via scattering models. In active sensing three contributing terms to radar backscattering can be identified: (1) the ground surface scatter term; (2) the volume scatter term representing scattering from the vegetation layer; and (3) the surface volume scatter term accounting for scattering from both surface and volume. In emission three sources of contribution can also be identified: (1) surface emission; (2) upward volume emission from the vegetation layer; and (3) downward volume emission scattered upward by the ground surface. As ground moisture increases, terms (1) and (3) increase due to increase in permittivity in the active case. However, in passive sensing, term (1) decreases but term (3) increases for the same reason. This self compensating effect produces a loss in sensitivity to change in ground moisture. Furthermore, emission from vegetation may be larger than that from the ground. Hence, the presence of vegetation layer causes a much greater loss of sensitivity to passive than active sensing of soil moisture.

Fung, A. K.↗

Simulating Forest Dynamics of Lowland Rainforests in Eastern Madagascar

Ecological modeling and forecasting are essential tools for the understanding of complex vegetation dynamics. The parametric demands of some of these models are often lacking or scant for threatened ecosystems, particularly in diverse tropical ecosystems. One such ecosystem and also one of the world's biodiversity hotspots, Madagascar's lowland rainforests, have disappeared at an alarming rate. The processes that drive tree species growth and distribution remain as poorly understood as the species themselves. We investigated the application of the process-based individual-based FORMIND model to successfully simulate a Madagascar lowland rainforest using previously collected multi-year forest inventory plot data. We inspected the model's ability to characterize growth and species abundance distributions over the study site, and then validated the model with an independently collected forest-inventory dataset from another lowland rainforest in eastern Madagascar. Following a comparative analysis using inventory data from the two study sites, we found that FORMIND accurately captures the structure and biomass of the study forest, with r(squared) values of 0.976, 0.895, and 0.995 for 1:1 lines comparing observed and simulated values across all plant functional types for aboveground biomass (tonnes/ha), stem numbers, and basal area (m(squared)/ha), respectively. Further, in validation with a second study forest site, FORMIND also compared well, only slightly over-estimating shade-intermediate species as compared to the study site, and slightly under-representing shade-tolerant species in percentage of total aboveground biomass. As an important application of the FORMIND model, we measured the net ecosystem exchange (NEE, in tons of carbon per hectare per year) for 50 ha of simulated forest over a 1000-year run from bare ground. We found that NEE values ranged between 1 and -1 t Cha(exp -1)year(exp -1), consequently the study forest can be considered as a net neutral or a very slight carbon sink ecosystem, after the initial 130 years of growth. Our study found that FORMIND represents a valuable tool toward simulating forest dynamics in the immensely diverse Madagascar rainforests.

Forest Productivity↗

Active Microwave Properties of Vegetation Canopies

Potential users of radar imagery need a better fundamental understanding of the capabilities of radar systems for vegetation studies than past studies provide. One approach is the use of theoretical models to predict observable active microwave properties of vegetation. This in turn requires accurate observations of backscattering coefficients and other active microwave properties in field research studies. The background document for the SRAEC program emphasizes the need to relate electromagnetic parameters to classical biophysical descriptors and to understand the role of polarization, especially cross-polarization. The broad goal of this study is to increase the understanding of the effects of canopy structure on the active microwave properties of vegetation canopies, with particular attention to polarization.

Paris, J. F.↗

The Added Value of SMAP Soil Moisture in Crop Yield Forecasting Over Argentina

Argentina is one of the major producers and exporter of soybeans, corn, and wheat to the world market; therefore, the accurate and timely forecasting of those crops yield is crucial to national crop management and global food security. Previous studies have mainly focused on developing forecasting models for a specific crop type and location using a single source of data (e.g., vegetation indices), thus providing little insight into the forecasting models' performance on different crop types and regions. Besides, these models are based on traditional statistical regression algorithms, while more advanced machine learning approaches have not been explored. This study investigated the estimation of crop yields of three major crops (corn, soybean, and winter wheat) using Multiple Linear Regression (MLR) and Support Vector Machine (SVM), over major growing provinces in Argentina. Our models were trained and evaluated on data from 2015 to 2020, where three remote sensing products (Normalized difference vegetation index (NDVI), SMAP soil moisture, and MODIS evapotranspiration) were used as predictors. Our results indicated that accurate crop yield forecasts using the developed regression models could be made one to two months before harvest. The MLR and SVM model performance varied among different crop types, where soybean and corn exhibited better predictability compare to the wheat. In most cases, the SVM outperformed the multiple linear regression model due to its ability to capture the nonlinear and complex features of the crop-production process. The forecasted model that combines data from multiple sources outperformed single-source satellite data. The highest accuracy was obtained when the three data sources were all considered in the model development. Results also indicated that the inclusion of SMAP soil moisture improved crop yield forecasting in most provinces, and the most significant improvements occurred in the drier region.

Nazmus Shams Sazib↗

Snow distribution patterns revisited: A physics-based and machine learning hybrid approach to snow distribution mapping in the sub-Arctic Supporting Data

Snow in the Arctic and sub-Arctic is highly variable at fine scales, with deep drifts and shallow scoured areas creating a complex pattern of snow on the landscape. This fine-scale variation in snow is driven primarily by landscape and vegetation properties. Some landscape features, such as river beds, will rapidly fill in with snow during the wintertime due to high winds, while shrubs will trap blowing snow, resulting in drifts. Meanwhile, snow will blow off of exposed areas, resulting in abnormally shallow snow. These complex interactions between wind, vegetation, and terrain are difficult to represent well with physically-based models, but machine learning techniques have shown promise in the past. Here, we propose a hybrid modeling approach, where we use machine learning derived snow pattern maps to inform SnowModel, a physically-based snow process model. We develop and test this technique at the Teller 27 Seward Peninsula NGEE-Arctic study site. This dataset includes 5 *.nc files of model inputs and outputs plus one user guide (*.pdf). We present the data we use to drive SnowModel (vegetation type, digital elevation model), the snow pattern maps used to inform SnowModel (Standardized Depth Values maps, Machine Learning Snow Distribution Pattern), and our machine learning, SnowModel, and Hybrid snow depth and snow water equivalent results. The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗

Estimating surface soil moisture from satellite microwave measurements and a satellite derived vegetation index

Normalized 18-GHz microwave brightness temperatures, T(B), and a vegetation index determined from satellite radiometer data are combined with climatically modeled surface moisture estimates to constrain a simple physically based soil moisture model. It is found that the normalized T(B) values correlated well with soil moisture when the data were segregated by vegetation index range, but less so when all the data were combined. By using the vegetation index parameter, the model is shown to account for about 70 percent of the variability in modeled surface soil moisture.

Owe, Manfred↗

Vegetation stress as a feedback mechanism in midlatitude drought

An atmospheric general circulation model with land surface properties represented by the Simplified Simple Biosphere Model is used to investigate the effect of soil moisture and vegetation stress on drought in the mid-latitudes. An idealized land-sea distribution with simple topography is used to remove as many external sources of climate variation as possible. The land consists of a single, flat, rectangular continent covered with prairie vegetation and centered on 44 deg N of an aqua planet. A control integration of 4 years is performed, and several sets of seasonal anomaly integrations are made to test the sensitivity of seasonal climate to low initial (1 April) soil moisture and dormant vegetation like what would occur during a severe drought. It is found that the inclusion of dormant vegetation during the spring and early summer greatly reduces evapotranspiration by eliminating transpiration. This affects local climate more strongly as summer progresses. Low initial soil moisture, combined with dormant vegetation, leads to a severe drought. The reduction in precipitation is much greater in magnitude than that due to low soil moisture alone, and greater than the sum of the effects computed separately. Although the short-term drought is more severe, the dormancy of the vegetation prevents further depletion of moisture in the root zone of the soil, so soil moisture begins to rebound toward the middle of summer.

Dirmeyer, Paul A.↗

Utility of near‐surface phenology in estimating productivity and evapotranspiration across diverse ecosystems

Abstract Agroecosystems, which include row crops, pasture, and grass and shrub grazing lands, are sensitive to changes in management, weather, and genetics. To better understand how these systems are responding to changes, we need to improve monitoring and modeling carbon and water dynamics. Vegetation Indices (VIs) are commonly used to estimate gross primary productivity (GPP) and evapotranspiration (ET), but these empirical relationships are often location and crop specific. There is a need to evaluate if VIs can be effective and, more general, predictors of ecosystem processes through time and across different agroecosystems. Near‐surface photographic (red‐green‐blue) images from PhenoCam can be used to calculate the VI green chromatic coordinate (G CC ) and offer a pathway to improve understanding of field‐scale relationships between VIs and GPP and ET. We synthesized observations spanning 76 site‐years across 15 agroecosystem sites with PhenoCam G CC and GPP or ET estimates from eddy covariance (EC) to quantify interannual variability (IAV) in the relationship between GPP and ET and G CC across. We uncovered a high degree of variability in the strength and slopes of the G CC ∼ GPP and ET relationships (R 2 = 0.1 ‐ 0.9) within and across production systems. Overall, G CC is a better predictor of GPP than ET (R 2 = 0.64 and 0.54, respectively), performing best in croplands (R 2 = 0.91). Shrub‐dominated systems exhibit the lowest predictive power of G CC for GPP and ET but have less IAV in slope. We propose that PhenoCam estimates of G CC could provide an alternative approach for predictions of ecosystem processes.

Environmental Sciences & Ecology↗

Gridded daily weather data for North America with comprehensive uncertainty quantification

Abstract Access to daily high-resolution gridded surface weather data based on direct observations and over long time periods is essential for many studies and applications including vegetation, wildlife, soil health, hydrological modelling, and as driver data in Earth system models. We present Daymet V4, a 40-year daily meteorological dataset on a 1 km grid for North America, Hawaii, and Puerto Rico, providing temperature, precipitation, shortwave radiation, vapor pressure, snow water equivalent, and day length. The dataset includes an objective quantification of uncertainty based on strict cross-validation analysis for temperature and precipitation results. The dataset represents several improvements from a previous version, and this data descriptor provides complete documentation for updated methods. Improvements include: reductions in the timing bias of input reporting weather station measurements; improvement to the three-dimensional regression model techniques in the core algorithm; and a novel approach to handling high elevation temperature measurement biases. We show cross-validation analyses with the underlying weather station data to demonstrate the technical validity of new dataset generation methods, and to quantify improved accuracy.

54 ENVIRONMENTAL SCIENCES↗

Controls and relationships of soil organic carbon abundance and persistence vary across pedo–climatic regions

One of the largest uncertainties in the terrestrial carbon cycle is the timing and magnitude of soil organic carbon (SOC) response to climate and vegetation change. This uncertainty prevents models from adequately capturing SOC dynamics and challenges the assessment of management and climate change effects on soils. Reducing these uncertainties requires simultaneous investigation of factors controlling the amount (SOC abundance) and duration (SOC persistence) of stored C. We present a global synthesis of SOC and radiocarbon profiles (n Profile = 597) to assess the timescales of SOC storage. We use a combination of statistical and depth–resolved compartment models to explore key factors controlling the relationships between SOC abundance and persistence across pedo–climatic regions and with soil depth. This allows us to better understand (i) how SOC abundance and persistence covary across pedo–climatic regions and (ii) how the depth dependence of SOC dynamics relates to climatic and mineralogical controls on SOC abundance and persistence. We show that SOC abundance and persistence are differently related; the controls on these relationships differ substantially between major pedo–climatic regions and soil depth. For example, large amounts of persistent SOC can reflect climatic constraints on soils (e.g., in tundra/polar regions) or mineral absorption, reflected in slower decomposition and vertical transport rates. In contrast, lower SOC abundance can be found with lower SOC persistence (e.g., in highly weathered tropical soils) or higher SOC persistence (e.g., in drier and less productive regions). We relate variable patterns of SOC abundance and persistence to differences in the processes constraining plant C input, microbial decomposition, vertical C transport and mineral SOC stabilization potential. This process–oriented grouping of SOC abundance and persistence provides a valuable benchmark for global C models, highlighting that pedo–climatic boundary conditions are crucial for predicting the effects of climate change and soil management on future C abundance and persistence.

54 ENVIRONMENTAL SCIENCES↗

Location Identifiers, Metadata, and Map for Field Measurements at the East-Taylor Watershed Community Observatory, Colorado, USA (Version 3.3)

This dataset contains identifiers, metadata, and a map of the locations where field measurements have been conducted at the East-Taylor Watershed Community Observatory located in the Upper Colorado River Basin, United States. This is version 3.3 of the dataset and replaces the prior version 3.2 (see below for details on changes between the versions). Dataset description: The East River-Taylor Watershed is the primary field site of the Watershed Function Scientific Focus Area (WFSFA) and the Rocky Mountain Biological Laboratory. Researchers from several institutions generate highly diverse hydrological, biogeochemical, climate, vegetation, geological, remote sensing, and model data at the East-Taylor Watershed in collaboration with the WFSFA. Thus, the purpose of this dataset is to maintain an inventory of the field locations and instrumentation to provide information on the field activities in the East-Taylor Watershed and coordinate data collected across different locations, researchers, and institutions. The dataset contains (1) a README file with information on the various files, (2) three csv files describing the metadata collected for each surface point location, plot and region registered with the WFSFA, (3) csv files with metadata and contact information for each surface point location registered with the WFSFA, (4) a csv file with with metadata and contact information for plots, (5) a csv file with metadata for geographic regions and sub-regions within the watershed, (6) a compiled xlsx file with all the data and metadata which can be opened in Microsoft Excel, (7) a kml map of the locations plotted in the watershed which can be opened in Google Earth, (8) a jpg image of the kml map which can be viewed in any photo viewer, and (9) a zipped file with the registration templates used by the SFA team to collect location metadata. The zipped template file contains two csv files with the blank templates (point and plot), two csv files with instructions for filling out the location templates, and one compiled xlsx file with the instructions and blank templates together. Additionally, the templates in the xlsx include drop down validation for any controlled metadata fields. Persistent location identifiers (Location_ID) are determined by the WFSFA data management team and are used to track data and samples across locations. Dataset uses: This location metadata is used to update the Watershed SFA’s publicly accessible Field Information Portal (an interactive field sampling metadata exploration tool; https://wfsfa-data.lbl.gov/watershed/), the kml map file included in this dataset, and other data management tools internal to the Watershed SFA team. Version Information: The latest version of this dataset publication is version 3.3. This version contains 167 new point locations, 1 new plot, and 2 new geographic regions. Overall, there are a total of 1439 point locations, 75 plots, and 54 geographic regions. Additionally, the kml map of locations and image now includes two boundaries (Upper Ohio Creek (UO) and Carbon Creek (CA)) outside of the East River watershed (USGS HUC-10) and accompanying stream network that represents areas of focus. Refer to methods for further details on the version history. This dataset will be updated on a periodic basis with new measurement location information. Researchers interested in having their East-Taylor Watershed measurement locations added to this list should reach out to the WFSFA data management team at wfsfa-data@googlegroups.com. Acknowledgments: Please cite this dataset if using any of the location metadata in other publications or derived products. If using the location metadata for the 2018 NEON hyperspectral campaign, additionally cite Chadwick et al. (2020). doi:10.15485/1618130. This work was supported by the Watershed Function Science Focus Area at Lawrence Berkeley National Laboratory funded by the US Department of Energy, Office of Science, Biological and Environmental Research under Contract No. DE-AC02-05CH11231. Part of this work was performed at SLAC Accelerator Laboratory funded by the US Department of Energy, Office of Science, Biological and Environmental Research under Contract No. DE-AC02-76SF00515.

2018 NEON and 2025 CHESS Campaigns↗

Wild Isolates of Neurospora crassa Reveal Three Conidiophore Architectural Phenotypes

The vegetative life cycle in the model filamentous fungus, Neurospora crassa, relies on the development of conidiophores to produce new spores. Environmental, temporal, and genetic components of conidiophore development have been well characterized; however, little is known about their morphological variation. We explored conidiophore architectural variation in a natural population using a wild population collection of 21 strains from Louisiana, United States of America (USA). Our work reveals three novel architectural phenotypes, Wild Type, Bulky, and Wrap, and shows their maintenance throughout the duration of conidiophore development. Furthermore, we present a novel image-classifier using a convolutional neural network specifically developed to assign conidiophore architectural phenotypes in a high-throughput manner. To estimate an inheritance model for this discrete complex trait, crosses between strains of each phenotype were conducted, and conidiophores of subsequent progeny were characterized using the trained classifier. Our model suggests that conidiophore architecture is controlled by at least two genes and has a heritability of 0.23. Additionally, we quantified the number of conidia produced by each conidiophore type and their dispersion distance, suggesting that conidiophore architectural phenotype may impact N. crassa colonization capacity.

59 BASIC BIOLOGICAL SCIENCES↗

Global rules for translating land-use change (LUH2) to land-cover change for CMIP6 using GLM2

Anthropogenic land-use and land-cover change activities play a critical role in Earth system dynamics through significant alterations to biogeophysical and biogeochemical properties at local to global scales. To quantify the magnitude of these impacts, climate models need consistent land-cover change time series at a global scale, based on land-use information from observations or dedicated land-use change models. However, a specific land-use change cannot be unambiguously mapped to a specific land-cover change. Here, nine translation rules are evaluated based on assumptions about the way land-use change could potentially impact land cover. Utilizing the Global Land-use Model 2 (GLM2), the model underlying the latest Land-Use Harmonization dataset (LUH2), the land-cover dynamics resulting from land-use change were simulated based on multiple alternative translation rules from 850 to 2015 globally. For each rule, the resulting forest cover, carbon density and carbon emissions were compared with independent estimates from remote sensing observations, U.N. Food and Agricultural Organization reports, and other studies. The translation rule previously suggested by the authors of the HYDE 3.2 dataset, that underlies LUH2, is consistent with the results of our examinations at global, country and grid scales. This rule recommends that for CMIP6 simulations, models should (1) completely clear vegetation in land-use changes from primary and secondary land (including both forested and non-forested) to cropland, urban land and managed pasture; (2) completely clear vegetation in land-use changes from primary forest and/or secondary forest to rangeland; (3) keep vegetation inland-use changes from primary non-forest and/or secondary non-forest to rangeland. Our analysis shows that this rule is one of three (out of nine)rules that produce comparable estimates of forest cover, vegetation carbon and emissions to independent estimates and also mitigate the anomalously high carbon emissions from land-use change observed in previous studies in the 1950s. According to the three translation rules, contemporary global forest area is estimated to be 37.42×106 km2, within the range derived from remote sensing products. Likewise, the estimated carbon stock is in close agreement with reference biomass datasets, particularly over regions with more than 50 % forest cover

58 GEOSCIENCES↗

The role of space borne imaging radars in environmental monitoring: Some shuttle imaging radar results in Asia

The synoptic view afforded by orbiting Earth sensors can be extremely valuable for resource evaluation, environmental monitoring and development planning. For many regions of the world, however, cloud cover has prevented the acquisition of remotely sensed data during the most environmentally stressful periods of the year. How synthetic aperture imaging radar can be used to provide valuable data about the condition of the Earth's surface during periods of bad weather is discussed. Examples are given of applications using data from the Shuttle Imaging Radars (SIR) A and B for agricultural land use and crop condition assessment, monsoon flood boundary and flood damage assessment, water resource monitoring and terrain modeling, coastal forest mapping and vegetation penetration, and coastal development monitoring. Recent SIR-B results in Bangladesh are emphasized, radar system basics are reviewed and future SAR systems are discussed.

Imhoff, Marc L.↗