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At least 649 records · Page 36

Polyproline peptide targets Klebsiella pneumoniae polysaccharides to collapse biofilms

Hypervirulent Klebsiella pneumoniae is known for its increased extracellular polysaccharide production. Biofilm matrices of hyper- virulent K. pneumoniae have increased polysaccharide abundance and are uniquely susceptible to disruption by peptide bactenecin 7 (bac7 (1–35)). Here, using confocal microscopy, we show that poly- saccharides within the biofilm matrix collapse following bac7 (1–35) treatment. This collapse led to the release of cells from the biofilm, which were then killed by the peptide. Characterization of truncated peptide analogs revealed that their interactions with polysaccharide were responsible for the biofilm matrix changes that accompany bac7 (1–35) treatment. Ultraviolet photodissociation mass spec- trometry with the parental peptide or a truncated analog bac7 (10–35) reveal the important regions for bac7 (1–35) complexing with polysaccharides. Finally, we tested bac7 (1–35) using a murine skin abscess model and observed a significant decrease in the bacte- rial burden. These findings unveil the potential of bac7 (1–35) poly- saccharide interactions to collapse K. pneumoniae biofilms.

59 BASIC BIOLOGICAL SCIENCES↗

Is solid copper oxalate a spin chain or a mixture of entangled spin pairs?

Macroscopic assemblies of interacting spins give rise to a broad spectrum of behaviors determined by the spatial arrangement of the magnetic sites and the electronic interactions between them. Compounds of copper (II), in which each copper carries spin 1/2, exhibit a vast variety of physical properties. For antiferromagnetically coupled spin sites, there are two limiting scenarios: spin chains in which the spins can exhibit a long-range order or a mixture of dimers in which the spins within each pair are entangled but do not communicate with the spins from other dimers. In principle, the two types can be distinguished on the basis of experimental observations and modeling using empirically parameterized effective Hamiltonians, but in practice, ambiguity may persist for decades, as is the case for copper oxalate. Here we use high-level ab initio calculations to establish the validity of the nearest-site Heisenberg model and to predict the interaction strength between the magnetic sites. Finally, the computed magnetic susceptibility provides an unambiguous interpretation of magnetic experiments performed throughout half a century, clearly supporting the infinite spin-chain behavior of solid copper oxalate.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Interplay between Mixed and Pure Exciton States Controls Singlet Fission in Rubrene Single Crystals

Singlet fission (SF) is a multielectron process in which one singlet exciton S converts into a pair of separated triplet excitons T. SF is widely studied as it may help overcome the Shockley−Queisser efficiency limit for semiconductor photovoltaic cells. To elucidate and control the SF mechanism, great attention has been given to the identification of intermediate states in SF materials, which often appear elusive due to the complexity and fast time scales of the SF process. Here, we apply 14 fs-1 ms transient absorption techniques to high-purity rubrene single crystals to disentangle the intrinsic fission dynamics from the effects of defects and grain boundaries and to identify reliably the fission intermediates. Our data demonstrates that above-gap excitation directly generates a hybrid vibronically assisted mixture of singlet state and triplet-pair multiexciton [S/TT], which rapidly (<100 fs) and coherently branches into pure singlet or triplet excitations. The relaxation of [S/TT] to S is followed by a relatively slow and temperature-activated (48 meV activation energy) incoherent fission process. The SF competing pathways and intermediates revealed here unify the observations and models presented in previous studies of SF in rubrene and offer alternative strategies for the development of SF-enhanced photovoltaic materials.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Four Theories of the Madden‐Julian Oscillation

Abstract Studies of the Madden‐Julian Oscillation (MJO) have progressed considerably during the past decades in observations, numerical modeling, and theoretical understanding. Many theoretical attempts have been made to identify the most essential processes responsible for the existence of the MJO. Criteria are proposed to separate a hypothesis from a theory (based on the first principles with quantitative and testable assumptions, able to predict quantitatively the fundamental scales and eastward propagation of the MJO). Four MJO theories are selected to be summarized and compared in this article: the skeleton theory, moisture‐mode theory, gravity‐wave theory, and trio‐interaction theory of the MJO. These four MJO theories are distinct from each other in their key assumptions, parameterized processes, and, particularly, selection mechanisms for the zonal spatial scale, time scale, and eastward propagation of the MJO. The comparison of the four theories and more recent development in MJO dynamical approaches lead to a realization that theoretical thinking of the MJO is diverse and understanding of MJO dynamics needs to be further advanced.

58 GEOSCIENCES↗

Analysis of Fault Zone Resonance Modes Recorded by a Dense Seismic Array Across the San Jacinto Fault Zone at Blackburn Saddle

We present observations and modeling of spatial eigen-functions of resonating waves within fault zone waveguide, using data recorded on a dense seismic array across the San Jacinto Fault Zone (SJFZ) in southern California. The array consists of 5-Hz geophones that cross the SJFZ with ~10-30 m spacing at the Blackburn Saddle near the Hemet Stepover. Wavefield snapshots after the S wave arrival are consistent for more than 50 near-fault events, suggesting that this pattern is controlled by the fault zone structure rather than source properties. Data from example event with high signal to noise ratio shows three main frequency peaks at ~1.3 Hz, ~2.0 Hz, and ~2.8 Hz in the amplitude spectra of resonance waves averaged over stations near the fault. The data are modeled with analytical expressions for eigen-functions of resonance waves in a low-velocity layer (fault zone) between two quarter-spaces. Using a grid search-based method, we investigate the possible width of the waveguide, location within the array, and shear wave velocities of the media that fit well the resonance signal at ~1.3 Hz. The results indicate a ~300 m wide damaged fault zone layer with ~65% S wave velocity reduction compared to the host rock. The SW edge of the low-velocity zone is near the mapped fault surface trace, indicating that the damage zone is asymmetrically located at the regionally faster NE crustal block. The imaging resolution of the fault zone structure can be improved by modeling fault zone resonance modes and trapped waves together.

58 GEOSCIENCES↗

Can We Better Constrain the Timing of GNAIW/UNADW Variability in the Western Equatorial Atlantic and Its Relationship to Climate Change During the Last Deglaciation?

We have revisited the well-trod VM28-122 core retrieved from the deep Colombian Basin, which includes sediments that reflect modern Upper North Atlantic Deep Water and extends through the last deglaciation into the last glacial period when the site was bathed in Glacial North Atlantic Intermediate Water. Here, we leverage the nearby Cariaco Basin's surface water radiocarbon reconstruction (reservoir age, and ΔR) on the IntCal20 timescale to recast the period of the last deglaciation with a newly constrained age model. Based on the revised age model, we observe that the multimillennial decrease in benthic δ 13 C and B/Ca (which record δ 13 C of dissolved inorganic carbon and Δ[CO 3 –2 ], respectively) began at 18,100 ± 240 (95% CI) calibrated years BP, synchronous with Termination 1, as identified by changes in the Antarctic Ice Sheet composite and by the onset of rapid glacier recession in the Southern Hemisphere (Denton et al., 2010, https://doi.org/10.1126/science.1184119; Denton et al., 2021, https://10.1016/j.quascirev.2020.106771). The beginning of the decrease in benthic δ 18 O is concurrent with the changes in carbon chemistry or at most, a few hundred years later. It is no later than 17,700 ± 300 (95% CI) yrs BP in our record, at the putative start of Heinrich Stadial 1. With sufficient data density (more than 2–3 control points per kyr) and an independent record of past surface water radiocarbon variations, it is possible to achieve late glacial and deglacial chronologies with fidelities similar to those of ice cores. Furthermore, doing so in more oceanographic locations should shed light more broadly on the mechanisms instrumental to abrupt climate change.

58 GEOSCIENCES↗

Consensus Equilibrium for Subsurface Delineation

Heterogeneity and insufficient site characterization limit our knowledge of the subsurface. Inversion techniques, which minimize the mismatch between observations and model predictions, have become an essential tool of subsurface characterization. Most optimization-based approaches fail to incorporate various implicit priors and capture the geological complexity. We overcome these limitations by deploying the plug-and-play and consensus equilibrium (CE) strategies, which provide a flexible framework for image reconstruction. Our CE methodology for spatial delineation of geologic formations consists of an image denoiser and a variational auto-encoder (deep learning-based emulator). The former ameliorates the reconstruction noise, yielding well-defined geological structures; its mathematical equivalence with the proximal operator allows the deployment of advanced denoisers (e.g., CNN-based denoiser) that do not correspond to a regularization objective. The latter defines a geology prior that imposes a geological constraint, for example, continuity and shape of geological features, onto the reconstructed image. Here, we conduct a series of numerical experiments dealing with transient two-dimensional flow driven by a pumping well and natural hydraulic head gradient. They demonstrate the CE framework's ability to delineate, both probabilistically and deterministically, complex subsurface environments with sufficient quality.

42 ENGINEERING↗

Soil Respiration Responses to Throughfall Exclusion Are Decoupled From Changes in Soil Moisture for Four Tropical Forests, Suggesting Processes for Ecosystem Models

Abstract Climatic drying is predicted for many tropical forests yet models remain poorly parameterized for these ecosystems, hampering predictions of forest‐climate interactions. We applied an integrated model–experiment approach, parameterizing an ecosystem model with tropical forest observational data and comparing model predictions to a field drying manipulation. We hypothesized that drying suppresses soil CO 2 fluxes (i.e., respiration) in relatively dry tropical forests but increases CO 2 fluxes in wetter tropical forests by alleviating anaerobiosis. We measured soil CO 2 fluxes during wet‐dry cycles from 2015 to 2022 in four Panamanian forests that vary in rainfall and soil fertility. Measured soil CO 2 fluxes declined in the dry season and peaked in the early wet season ahead of peak soil moisture, resulting in lower soil moisture optima for respiration than previously modeled. We then parameterized the model using field data and the new moisture‐respiration response functions. The updated model predicted increased soil CO 2 fluxes with drying in wetter and fertile forests and suppressed fluxes in drier, infertile forests. In contrast to model predictions, a chronic throughfall exclusion experiment initially suppressed soil respiration across forests, with sustained suppression for four years in the wettest forest only (−28% ± 4% during the dry season). In the fertile forest, drying eventually elevated CO 2 fluxes over this period (+75% ± 28% during the late wet season). The unexpected negative drying effect in the wettest, infertile forest could have resulted from reduced vertical flushing of nutrients into soils. Including hydro‐nutrient interactions in ecosystem models could improve predictions of tropical forest‐climate feedbacks.

54 ENVIRONMENTAL SCIENCES↗

Characterization of Aquifer Poroelastic Response to Impulse and Oscillatory Well Pressure Using Distributed Acoustic Sensing

Abstract The storage of fluids in the subsurface is critical for a broad spectrum of applications including managed aquifer recharge, storage of liquefied carbon dioxide and hydrogen, geothermal heat extraction and exploitation of hydrocarbon. It is surprising then, that there has been relatively little measurement of the vertical distribution of poroelastic storage in geologic formations as compared with permeability. We present experiments in which fluid was injected into an important regional aquifer and the depth‐dependent strain response measured using fiber optic distributed acoustic sensing. The formation expansion and contraction in response to fluid injection were several 100 nanostrain. Strain, and the implied storage distribution, was highly localized in specific strata and demonstrated complex, hydromechanical behavior. This new window into fluid‐geomechanical coupling undermines some typically use models and observations currently in practice, but provides potential for complete representation and prediction of fluid storage in the subsurface.

58 GEOSCIENCES↗

Learning Coagulation Processes With Combinatorial Neural Networks

Abstract Simulating the evolution of a coagulating aerosol or cloud of droplets in a key problem in atmospheric science. We present a proof of concept for modeling coagulation processes using a novel combinatorial neural network (CombNN) architecture. Using two types of data from a high‐detail particle‐resolved aerosol simulation, we show that CombNN models outperform standard neural networks and are competitive in accuracy with traditional state‐of‐the‐art sectional models. These CombNN models could have application in learning coarse‐grained coagulation models for multi‐species aerosols and for learning coagulation models from observed size‐distribution data.

54 ENVIRONMENTAL SCIENCES↗

Projecting Changes in the Frequency and Magnitude of Ozone Pollution Events Under Uncertain Climate Sensitivity

Abstract Climate change is projected to worsen ozone pollution over many populated regions, with larger impacts at higher concentrations. More intense and frequent ozone episodes risk setbacks to human health and environmental policy achievements. However, assessing these changes is complicated by uncertain climate sensitivity, closely related to climate model response, and internal variability in simulations projecting climate's influence on air quality. Here, leveraging a global modeling framework that one‐way couples a human activity model, an Earth system model of intermediate complexity, and an atmospheric chemistry model, we investigate the role of climate sensitivity in climate‐induced changes to high ozone pollution episodes in the United States using multiple greenhouse gas emissions scenarios, representations of climate sensitivity, and initial condition members. We bias correct and evaluate historical model simulations, identifying modeled and observed O 3 episodes using extreme value theory, and extend the approach to projections of mid‐ and end‐century climate impacts. Results show that the influence of climate sensitivity can be as significant as that of greenhouse gas emissions scenario absent precursor emissions changes. Climate change is projected to increase the magnitude of the highest annually occurring O 3 concentrations by over 2.3 ppb on average across the U.S. at mid‐century under a high climate sensitivity and moderate emissions scenario, but the increase is limited to less than 0.3 ppb under lower climate sensitivity. Further, we show that areas in the U.S. currently meeting air quality standards risk being pushed into non‐compliance due to a climate‐induced increase in frequency of high ozone days.

Environmental Sciences & Ecology↗

A Machine Learning Bias Correction on Large–Scale Environment of High–Impact Weather Systems in E3SM Atmosphere Model

Large–scale dynamical and thermodynamical processes are common environmental drivers of high–impact weather systems causing extreme weather events. However, such large–scale environmental conditions often display systematic biases in climate simulations, posing challenges to evaluating high–impact weather systems and extreme weather events. In this paper, a machine learning (ML) approach was employed to bias correct the large–scale wind, temperature, and humidity simulated by the atmospheric component of the Energy Exascale Earth System Model (E3SM) at ~1° resolution. The usefulness of the ML approach for extreme weather analysis was demonstrated with a focus on three high–impact weather systems, including tropical cyclones (TCs), extratropical cyclones (ETCs), and atmospheric rivers (ARs). We show that the ML model can effectively reduce climate bias in large–scale wind, temperature, and humidity while preserving their responses to imposed climate change perturbations. The bias correction is found to directly improve water vapor transport associated with ARs, and representations of thermodynamical flows associated with ETCs. When the bias–corrected large–scale winds are used to drive a synthetic TC track forecast model over the Atlantic basin, the resulting TC track density agrees better with that of the TC track model driven by observed winds. In addition, the ML model insignificantly interferes with the mean climate change signals of large–scale storm environments as well as the occurrence and intensity of three weather systems. This study suggests that the proposed ML approach can be used to improve the downscaling of extreme weather events by providing more realistic large–scale storm environments simulated by low–resolution climate models.

54 ENVIRONMENTAL SCIENCES↗

Cities Are Concentrators of Complex, MultiSectoral Interactions Within the Human-Earth System

Cities are concentrators of complex, multi-sectoral interactions. As keystones in the interconnected human-Earth system, cities have an outsized impact on the Earth system. We describe a multi-lens framework for organizing our understanding of the complexity of urban systems and scientific research on urban systems, which may be useful for natural system scientists exploring the ways their work can be made more actionable. We then describe four critical dimensions along which improvements are needed to advance the urban research that addresses urgent climate challenges: (a) solutions-oriented research, (b) equity-centered assessments which rely on fine-scale human and ecological data, (c) co-production of knowledge, and (d) better integration of human and natural systems occurring through theory, observation, and modeling.

54 ENVIRONMENTAL SCIENCES↗

Separate the Role of Southern and Northern Extra‐Tropical Pacific in Tropical Pacific Climate Variability

Abstract Observational and modeling studies have elucidated the influential role played by the southern and northern extratropical Pacific (SEP and NEP) forcing in shaping dynamics of tropical Pacific climate variability. However, the relative importance of the NEP and SEP and the timescale on which they impact the tropics remain unclear. Using a linear inverse model (LIM) that selectively incorporates or excludes tropical‐extratropical coupling, we find a reduction in tropical interannual variability (∼40%) and low‐frequency (sub‐decadal to decadal) variability in the southeastern tropical Pacific region (∼70%) in the absence of SEP. Conversely, the absence of NEP yields no significant impact on tropical interannual variability but markedly diminishes low‐frequency variability in the central tropical Pacific region (∼70%). LIM and statistic diagnostics on CMIP6 models show the low‐frequency to total variability ratio in the tropical Pacific depending on their NEP and SEP representation. Models with more (less) low‐frequency power tend to show stronger NEP (SEP) dynamics.

Geology↗

Comparison of Global Aboveground Biomass Estimates From Satellite Observations and Dynamic Global Vegetation Models

The global forest carbon stocks represent the amount of carbon stored in woody vegetation and are important for quantifying the ability of the global forests to sequester atmospheric CO 2 and to provide ecosystem services (e.g., timber) under climate change. The forest ecosystem carbon pool estimates are highly variable and poorly quantified in areas lacking forest inventory estimates. Here, we compare and analyze aboveground biomass (AGB) estimates from five satellite-based global data sets and nine dynamic global vegetation models (DVGMs). We find that across the data sets, mean AGB exhibits the largest variability around the tropical area. In addition, AGB shows a similar latitudinal trend but large variability among the data sets. Satellite-based AGB estimates are lower than those simulated by DVGMs. The divergence among the satellite-based AGB estimates can be driven by the methodology, input satellite products, and the forested areas used to estimate AGB. The modeled NPP, autotrophic respiration, and carbon allocation mostly drive the variability of AGB simulated by DGVMs. The future availability of a high-quality global forest area map is anticipated to improve AGB estimate accuracy and to reduce the discrepancies among different satellite- and model-based AGB estimates. Furthermore, we suggest the carbon-modeling community reexamine the methodology used to estimate AGB and forested areas for a more robust global forest carbon stock estimation.

54 ENVIRONMENTAL SCIENCES↗

The Value of Forecasters‐in‐the‐Loop in Real‐Time Flood Forecasting in the Age of Machine Learning

Machine learning (ML) applications in hydrological forecasting are increasingly prevalent and show great potential. However, many previous studies have only evaluated performance through reanalysis or retrospective simulations compared to simplified baselines. This study provides the first assessment of ML performance against actual operational forecasting systems operated by the California Nevada River Forecast Center (CNRFC), which combines the Community Hydrologic Prediction System (CHPS) with forecasters-in-the-loop. Results demonstrate that forecasters-in-the-loop systems consistently outperform ML models in both general forecasts and flood alerting across lead times up to 96 hr, even when ML models use observed forcings, while CNRFC operational process relies on biased weather forecasts. Our analysis reveals that forecaster expertise maintains forecast reliability despite inaccurate precipitation inputs, with human-guided systems showing superior performance degradation characteristics at extended lead times. These findings highlight the irreplaceable value of human expertise in operational forecasting and caution against overstating current ML capabilities in real-world applications.

Tran, Vinh Ngoc [Univ. of Michigan, Ann Arbor, MI ↗

ENSO Recharge Oscillator Theory Integrating the Southward Wind Shift

The El Niño–Southern Oscillation (ENSO) is one of the most‐well understood climate phenomena, and the Recharge Oscillator (RO) theory is widely used to conceptualize its physics in observations and models. ENSO‐associated equatorial zonal wind anomalies shift southward in boreal winter, contributing to ENSO termination. Thus far, this effect has not been explicitly described in the RO framework. Here we derive a new form of the RO under the low‐frequency limit that incorporates the seasonal migration of zonal wind anomalies. In our theory, the Bjerknes feedback depends on the central latitude of zonal wind anomalies, decaying exponentially as winds shift away from the equator. Meanwhile, wind anomalies centered off the equator induce equatorial wave adjustment and thereby have a delayed effect on sea surface temperature anomalies. A stochastic RO simulation with a prescribed wind shift reproduces about half the amplitude of ENSO seasonal synchronization as well as ENSO combination tones.

54 ENVIRONMENTAL SCIENCES↗

Convective Biases in the US DOE Global Storm‐Resolving Model: Insights From Regionally Refined Simulations During the CACTI Campaign

Accurately simulating convective processes in complex terrain remains a critical challenge for global storm-resolving models (GSRMs). This study systematically evaluates moist convective biases in the Regionally Refined Mesh configuration of the U.S. Department of Energy Simple Cloud-Resolving E3SM Atmosphere Model (RRM-SCREAM) using comprehensive observations and large-eddy simulations from the Cloud, Aerosol, and Complex Terrain Interactions (CACTI) campaign in the mountainous area of central Argentina. Comparisons of simulations with high-resolution observations and reanalysis data indicate that RRM-SCREAM effectively captures large-scale meteorological patterns, including regional atmospheric gradients and diurnal variability. However, RRM-SCREAM disproportionately produces smaller precipitation clusters referred to as “popcorn convection,” and exaggerated rainfall intensities compared to observations and reference models. Detailed examination of a representative orographic shallow-to-deep convective transition case shows that RRM-SCREAM delays initial shallow convection growth due to lower-tropospheric dryness and sustained convective inhibition, but once triggered, deep convection becomes overly vigorous with excessively strong vertical velocities and elevated cloud ice content, linked to a thermodynamic structure characterized by suppressed low-level moistening and excessive upper-level moisture retention. Our results highlight specific deficiencies in the model representation of convective vertical velocity, cloud microphysical processes, and convective precipitation organization within RRM-SCREAM. Addressing these biases is essential for improving the predictions of convective clouds and precipitation in the global high-resolution atmospheric models.

Su, Tianning [Lawrence Livermore National Laborato↗