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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 649 records · Page 36
All sourcesNASA NTRSDOE OSTI
DOE OSTI2020

C{sub 2}N{sub 2} Vertical Profile in Titan’s Stratosphere

In this paper, we present the first measurements of the vertical distribution of cyanogen (C{sub 2}N{sub 2}) in Titan’s lower atmosphere at different latitudes and seasons, using Cassini’s Composite Infrared Spectrometer far-infrared data. We also study the vertical distribution of three other minor species detected in our data: methylacetylene (C{sub 3}H{sub 4}), diacetylene (C{sub 4}H{sub 2}), and H{sub 2}O, in order to compare them to C{sub 2}N{sub 2}, but also to get an overview of their seasonal and meridional variations in Titan’s lower stratosphere from 85 km to 225 km. We measured an average volume mixing ratio of C{sub 2}N{sub 2} of 6.2±0.8×10{sup −11} at 125 km at the equator, but poles exhibit a strong enrichment in C{sub 2}N{sub 2} (up to a factor 100 compared to the equator), greater than what was measured for C{sub 3}H{sub 4} or C{sub 4}H{sub 2}. Measuring C{sub 2}N{sub 2} profiles provides constraints on the processes controlling its distribution, such as bombardment by Galactic Cosmic Rays which seem to have a smaller influence on C{sub 2}N{sub 2} than predicted by photochemical models.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2020

Replacing photomultiplier tubes with silicon photomultipliers for nuclear safeguards applications

Photomultiplier tubes (PMTs) have been used for decades as the default light detection technology for scintillator-based radiation monitors. PMTs come with a handful of disadvantages, however, including large volume usage, fragility, high-voltage requirements, and susceptibility to magnetic fields. Arrays of silicon photomultipliers (SiPMs) are a possible alternative to PMTs providing similar performance while offering improvements in the areas listed. We focus on straightforward “drop-in replacement” evaluations by imposing a single channel output of the SiPM signal and a backend electronics data acquisition and analysis routine identical to that used for PMTs. In the realm of nuclear safeguards, the primary performance metric for gamma spectroscopy is detector resolution, and for neutron detection it is pulse shape discrimination (PSD) to separate neutron and gamma signals. In this work we present the results of replacing a PMT with a 2” x 2” SiPM array mounted, in turn, to the same 2” x 2” cylindrical sodium iodide (NaI) crystal. The ultimate comparison for this gamma spectrometry is confirmation of uranium enrichment standards, ranging from depleted uranium to 93% highly enriched uranium (HEU), by analyzing the resulting spectra with both a simple integral scaling in key energy regions of the spectrum, as well as with the NaIGEM software package. In addition to the gamma spectroscopy work, we will present the latest results on comparing the PSD capabilities of a 4” x 4” SiPM array to a 5” PMT. As with the gamma spectroscopy evaluations, the light detectors are mounted in turn to the same liter-scale organic scintillators. This neutron-focused work includes evaluation of prototype SiPM readout boards with a single output signal summed over 256 individual SiPM pixels, and evident tradeoffs between PSD capability and fast response.

Engineering - Instrumentation related to nuclear s↗
DOE OSTI2022

Final results on the $$0\nu \beta \beta $$ decay half-life limit of $$^{100}$$Mo from the CUPID-Mo experiment

Abstract The CUPID-Mo experiment to search for 0 $$\nu \beta \beta $$ ν β β decay in $$^{100}$$ 100 Mo has been recently completed after about 1.5 years of operation at Laboratoire Souterrain de Modane (France). It served as a demonstrator for CUPID, a next generation 0 $$\nu \beta \beta $$ ν β β decay experiment. CUPID-Mo was comprised of 20 enriched $$\hbox {Li}_{{2}}$$ Li 2 $$^{100}$$ 100 $$\hbox {MoO}_4$$ MoO 4 scintillating calorimeters, each with a mass of $$\sim 0.2$$ ∼ 0.2 kg, operated at $$\sim 20$$ ∼ 20 mK. We present here the final analysis with the full exposure of CUPID-Mo ( $$^{100}$$ 100 Mo exposure of 1.47 $$\hbox {kg} \times \hbox {year}$$ kg × year ) used to search for lepton number violation via 0 $$\nu \beta \beta $$ ν β β decay. We report on various analysis improvements since the previous result on a subset of data, reprocessing all data with these new techniques. We observe zero events in the region of interest and set a new limit on the $$^{100}$$ 100 Mo 0 $$\nu \beta \beta $$ ν β β decay half-life of $$T_{1/2}^{0\nu }$$ T 1 / 2 0 ν $$> {1.8}\times 10^{24}$$ > 1.8 × 10 24 year (stat. + syst.) at 90% CI. Under the light Majorana neutrino exchange mechanism this corresponds to an effective Majorana neutrino mass of $$\left $$ m β β $$<~{(0.28{-}0.49)} $$ < ( 0.28 - 0.49 ) eV, dependent upon the nuclear matrix element utilized.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2024

Impact of Source Geometry on Detector Response Matrix Efficiency: Simulations of the PFUNS-MUSiC Experiments

This work looks at two different bare highly enriched uranium (HEU) systems, configuration one from Measurements of Uranium Subcritical and Critical (MUSiC) and Prompt Fission Uranium Neutron Spectrum (PFUNS) to see the effect geometry has on detector efficiency and the response matrix. The distance from the multiplying source, the medium between the source and detector, and the geometry of the source all play a part in the efficiency of the detector. These factors are especially important when performing spectrum unfolding. Spectrum unfolding is a process used to reconstruct a true spectrum from measured detector response data. It involves interpreting a set of measured values, such as a light signal from a scintillator, to recover the original neutron energy spectrum. This leads to the question, how much will the efficiency of a detector change when you measure a point source compared to an extended source? The distance and solid angle from the source to the detector may be different. It may only be a minuscule change, but in the spectrum unfolding process it can have a considerable effect on the unfolded spectrum

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2020

Blanco DECam Bulge Survey (BDBS) II: project performance, data analysis, and early science results

ABSTRACT The Blanco DECam Bulge Survey (BDBS) imaged more than 200 sq deg of the Southern Galactic bulge using the ugrizY filters of the Dark Energy Camera, and produced point spread function photometry of approximately 250 million unique sources. In this paper, we present details regarding the construction and collation of survey catalogues, and also discuss the adopted calibration and dereddening procedures. Early science results are presented with a particular emphasis on the bulge metallicity distribution function and globular clusters. A key result is the strong correlation (σ ∼ 0.2 dex) between (u − i)o and [Fe/H] for bulge red clump giants. We utilized this relation to find that interior bulge fields may be well described by simple closed box enrichment models, but fields exterior to b ∼ −6° seem to require a secondary metal-poor component. Applying scaled versions of the closed box model to the outer bulge fields is shown to significantly reduce the strengths of any additional metal-poor components when compared to Gaussian mixture models. Additional results include: a confirmation that the u band splits the subgiant branch in M22 as a function of metallicity, the detection of possible extratidal stars along the orbits of M 22 and FSR 1758, and additional evidence that NGC 6569 may have a small but discrete He spread, as evidenced by red clump luminosity variations in the reddest bands. We do not confirm previous claims that FSR 1758 is part of a larger extended structure.

Johnson, Christian I.↗
DOE OSTI2022

EDGE COVID-19: a web platform to generate submission-ready genomes from SARS-CoV-2 sequencing efforts

Abstract Summary Genomics has become an essential technology for surveilling emerging infectious disease outbreaks. A range of technologies and strategies for pathogen genome enrichment and sequencing are being used by laboratories worldwide, together with different and sometimes ad hoc, analytical procedures for generating genome sequences. A fully integrated analytical process for raw sequence to consensus genome determination, suited to outbreaks such as the ongoing COVID-19 pandemic, is critical to provide a solid genomic basis for epidemiological analyses and well-informed decision making. We have developed a web-based platform and integrated bioinformatic workflows that help to provide consistent high-quality analysis of SARS-CoV-2 sequencing data generated with either the Illumina or Oxford Nanopore Technologies (ONT). Using an intuitive web-based interface, this workflow automates data quality control, SARS-CoV-2 reference-based genome variant and consensus calling, lineage determination and provides the ability to submit the consensus sequence and necessary metadata to GenBank, GISAID and INSDC raw data repositories. We tested workflow usability using real world data and validated the accuracy of variant and lineage analysis using several test datasets, and further performed detailed comparisons with results from the COVID-19 Galaxy Project workflow. Our analyses indicate that EC-19 workflows generate high-quality SARS-CoV-2 genomes. Finally, we share a perspective on patterns and impact observed with Illumina versus ONT technologies on workflow congruence and differences. Availability and implementation https://edge-covid19.edgebioinformatics.org, and https://github.com/LANL-Bioinformatics/EDGE/tree/SARS-CoV2. Supplementary information Supplementary data are available at Bioinformatics online.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

High resolution identification and quantification of diffuse deep groundwater discharge in mountain rivers using continuous boat-mounted helium measurements

Discharge of deeply sourced groundwater to streams is difficult to locate and quantify, particularly where both discrete and diffuse discharge points exist, but diffuse discharge is one of the primary controls on solute budgets in mountainous watersheds. The noble gas helium is a unique identifier of deep groundwater discharge because groundwater with long residence times is commonly enriched in helium. In this study, a portable mass spectrometer was used to measure longitudinal variation in dissolved helium concentrations in two mountainous rivers at high spatial resolution not feasible with traditional sampling techniques. Helium profiles were then simulated using a mass-balance model to quantify longitudinal variation in groundwater discharge to the receiving rivers. Results indicate helium concentrations were enriched by multiple orders of magnitude above atmospheric equilibrium in both rivers and that this persisted for up to 18 km below observed pulse inputs in the Colorado River. Helium mass-balance models match observed longitudinal patterns with the exception of sharp initial increases in helium observed in the rivers. Increased longitudinal groundwater discharge rates correspond to mapped geologic structures in both watersheds that likely transport deep geothermal water. Models show variable sensitivity to spatial assignment of input variables representing the groundwater source, illustrating the importance of collecting data from discrete groundwater discharges where possible. The methodology shows promise for field experiments designed to assess air–water exchange rates and to quantify total groundwater discharge from a combination of discrete and diffuse sources.

Deep groundwater↗
DOE OSTI2024

In Situ Determination of Thermoelastic Properties of Magnesite at High Pressure and Temperature With Implications to Seismic Detectability of Moderately Carbonated Lithologies in the Earth's Mantle

Abstract Subduction of carbonate‐bearing oceanic plates into Earth's interior recycles carbon from the surface to the deep mantle. The subducted carbonates can significantly affect mantle properties and dynamics. Magnesite is recognized as one of the major potential carbon hosts in the deep mantle because of its stability up to deep lower mantle conditions. However, despite many previous studies on the equation of state and elastic properties of magnesite, large discrepancies still exist for its elastic moduli and their pressure and temperature derivatives. Here we report in situ density and elastic wave velocity measurements on a natural magnesite at simultaneous high pressure‐temperature conditions up to ∼8 GPa–1073 K in a multi‐anvil apparatus using ultrasonic and synchrotron X‐ray techniques. Global fitting of the data set to finite strain equations yieldsK S0 = 114.0 ± 1.2 GPa, = 4.9 ± 0.3, = (−0.019 ± 0.002) GPa/K,G 0 = 68.6 ± 0.4 GPa,G′ = 1.6 ± 0.1, and = (−0.018 ± 0.001) GPa/K. Compared to other major upper mantle and transition zone minerals, magnesite has intermediateV P , the lowestV S , and the lowest density. Thus, magnesite possesses higherV P /V S ratio than other mantle minerals in normal mantle regions, whereas this feature is less pronounced in subduction zone environments. Modeling of the velocity profiles of carbonated lithologies along different geotherms suggests that moderately‐enriched magnesite domains are unlikely to be detected seismically in the Earth's mantle.

Geochemistry & Geophysics↗
DOE OSTI2022

Data-driven based coordinated smart inverter control for distributed energy resources

Smart inverters (SI) for distributed energy resources (DER) are becoming popular since they have the ability to stabilize as well as restore the voltage and frequency of power systems. Aiming at establishing the mathematical models combined with SI control methods, multiple optimization methods are developed. However, the computational complexity of solving such a mathematical model with various uncertainties limits the real-time application of the SI control. To conquer this challenge, a data-driven-based SI control approach is developed to achieve coordinated control in the high penetration DER system. First, an optimization problem for maximizing the active power generation and minimizing the power loss is designed using the Volt/VAR control. To reduce the time consumption, the recurrent neural network (RNN) is proposed to model the relationship between the uncertainties and control actions during the offline site. The RNN with different sub-structures such as the long short-term memory cell and gated recurrent unit cell are included to enrich the diversity of features. In the last stage, different experiment comparisons, including multiple uncertainties maps and stateof- art machine learning methods, are conducted to verify the effectiveness of the proposed method based on the IEEE 123 bus power system. The results demonstrate that the proposed method can effectively achieve a rapid and coordinated control with a lower error rate.

Qiu, Wei↗
DOE OSTI2022

Possibilities and Limitations of Kinematically Identifying Stars from Accreted Ultra-faint Dwarf Galaxies

Abstract The Milky Way has accreted many ultra-faint dwarf galaxies (UFDs), and stars from these galaxies can be found throughout our Galaxy today. Studying these stars provides insight into galaxy formation and early chemical enrichment, but identifying them is difficult. Clustering stellar dynamics in 4D phase space ( E , L z , J r , J z ) is one method of identifying accreted structure that is currently being utilized in the search for accreted UFDs. We produce 32 simulated stellar halos using particle tagging with the Caterpillar simulation suite and thoroughly test the abilities of different clustering algorithms to recover tidally disrupted UFD remnants. We perform over 10,000 clustering runs, testing seven clustering algorithms, roughly twenty hyperparameter choices per algorithm, and six different types of data sets each with up to 32 simulated samples. Of the seven algorithms, HDBSCAN most consistently balances UFD recovery rates and cluster realness rates. We find that, even in highly idealized cases, the vast majority of clusters found by clustering algorithms do not correspond to real accreted UFD remnants and we can generally only recover 6% of UFDs remnants at best. These results focus exclusively on groups of stars from UFDs, which have weak dynamic signatures compared to the background of other stars. The recoverable UFD remnants are those that accreted recently, z accretion ≲ 0.5. Based on these results, we make recommendations to help guide the search for dynamically linked clusters of UFD stars in observational data. We find that real clusters generally have higher median energy and J r , providing a way to help identify real versus fake clusters. We also recommend incorporating chemical tagging as a way to improve clustering results.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2025

HFIR LEU High Density Silicide Dispersion Optimized Design Steady-State Heat Transfer Analyses

Steady-state heat transfer simulations of the Oak Ridge National Laboratory High Flux Isotope Reactor (HFIR) with the low-enriched uranium (LEU) high-density silicide dispersion Optimized fuel design were performed to support comprehensive performance and safety metric studies concerning this design. The LEU Optimized design operates at 95 MW to maintain HFIR’s current highly enriched uranium (HEU) core performance level at 85 MW. Full cycle Mode 1 full flow Case 1 (inlet temperature), Case 2 (flux-to-flow), and Case 3 (inlet pressure) safety limit analyses were performed to assess the margins to critical heat flux. Under the prescribed conditions, this LEU design meets the safety limit and limiting control setting requirements outlined in HFIR’s documented safety analysis; however, the safety margins are less than those for the 85 MW HEU core, and several assumptions were made where fuel fabrication and qualification data are currently lacking for the silicide fuel design. Effects of changes to pertinent fuel fabrication assumptions and uncertainty factors on thermal safety margins were also evaluated, showing that the margins are sensitive to many of these parameters. Power and pressure perturbations were also performed, indicating that significant steady-state thermal margins could be gained by increasing the coolant inlet pressure.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗
DOE OSTI2024

Seedling nitrogen uptake and rhizodeposition between mycorrhizal types

Tree mycorrhizal associations are associated with patterns in N cycling and soil organic matter (SOM) storage, however, we still lack a mechanistic understanding of what tree and fungal traits drive these patterns and how they will respond to global changes in soil N availability. To address this knowledge gap, we investigated how arbuscular mycorrhizal (AM)- and ectomycorrhizal (EcM)-associated seedlings alter rhizodeposition in response to increased inorganic N acquisition. Specifically, we conducted this greenhouse experiment in a sealed labeling chamber with an enriched 13Carbon atmosphere and 15Nitrogen enriched fertilizer over the course of five months from April 2021 - August 2021. To include the variability across tree species, we grew eight species of seedlings belonging to eight families that were either arbuscular (Acer rubrum, Nyssa sylvatica, Thuja occidentalis, and Prunus seritina) or ectomycorrhizal-associated (Quercus rubra, Tilia americana, Pinus strobus, and Betula lenta). We measured rhizodeposition (mg 13C), plant N uptake from fertilizer (mg N), net soil carbon, and the abundance of mycorrhizal fungi (ITS sequencing and qPCR). We also characterized fungal (ITS2) and bacterial (16S) soil communities.The data from this project are ".csv" files that can up downloaded into a folder, and then run in the associated R markdown scripts after changing the source folder location at the top of the script. These data include raw outputs and processed files (using the R markdown files) for seedling growth and biomass, 15N content, soil 13C content, raw reads and processed file versions for fungal and bacterial ASVS, and a final summary file used for modeling. R software is needed to run these data, and the packages needed are listed at the top of the R markdown file.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

An Intermediate-age Alpha-rich Galactic Population in K2

We explore the relationships between the chemistry, ages, and locations of stars in the Galaxy using asteroseismic data from the K2 mission and spectroscopic data from the Apache Point Galactic Evolution Experiment survey. Previous studies have used giant stars in the Kepler field to map the relationship between the chemical composition and the ages of stars at the solar circle. Consistent with prior work, we find that stars with high [α/Fe] have distinct, older ages in comparison to stars with low [α/Fe]. We provide age estimates for red giant branch (RGB) stars in the Kepler field, which support and build upon previous age estimates by taking into account the effect of α-enrichment on opacity. Including this effect for [α/Fe]-rich stars results in up to 10% older ages for low-mass stars relative to corrected solar mixture calculations. This is a significant effect that Galactic archeology studies should take into account. Looking beyond the Kepler field, we estimate ages for 735 RGB stars from the K2 mission, mapping age trends as a function of the line of sight. We find that the age distributions for low- and high-[α/Fe] stars converge with increasing distance from the Galactic plane, in agreement with suggestions from earlier work. We find that K2 stars with high [α/Fe] appear to be younger than their counterparts in the Kepler field, overlapping more significantly with a similarly aged low-[α/Fe] population. This observation may suggest that star formation or radial migration proceeds unevenly in the Galaxy.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2024

Towards Cost-Competitive Microreactors

To assess the cost competitiveness of microreactors, a new tool integrating reactor design calculations with economic models was developed. Using detailed cost data and design specifications from the MARVEL project (85 kWth), the tool estimates costs for a more representative commercial microreactor (20 MWth). The LCOE for a 20 MWth MARVEL-like reactor is estimated at $236/MWh, with an overnight cost of about $12,000/kW (excluding fuel). Mass production could reduce costs by 70%, making the 10th unit cost around $3,700/kWe, which is economically competitive. The new neutronics-economics coupling tool also enables studying the impact of the design parameters on the economic figures of merit. The impact of changing the enrichment and reactor capacity on the LCOE has been studied.

22 - GENERAL STUDIES OF NUCLEAR REACTORS↗
DOE OSTI2025

Measured Reaction Rate Ratios of 235 U, 238 U, 237 Np, 239 Pu Samples in the PFUNS 235 U Prompt Fission Neutron Spectrum Criticality Experiment

The Prompt Fission Uranium Neutron Spectrum experiment, an experiment to reduce uncertainties in the high energy tail of the 235 U prompt fission spectrum, achieved success by performing two separate irradiations measuring approximately 40 different IRDFF-II reactions total using over 20 different foil materials at the National Criticality Experiments Research Center in February 2024. The criticality experiment utilized a set of highly enriched uranium hemispherical shells of increasing diameters with a large void in the center where the samples were located. The focus of this work is the first of two PFUNS irradiations focused on irradiating two of each fission foils, one bare and one cadmium covered, along with metal activation foils containing reaction products with short half-lives, such as indium, iron, and gold along with nickel fluence monitors. This work focuses on presenting the initial reaction rate ratio results of the fission foils from the aforementioned first irradiation to assist in nuclear data validation of those species in a nearly pure 235 U prompt fission neutron spectrum and compares to the Lady Godiva and Flattop-25 historic experiments at the Los Alamos Critical Experiments Facility. Future work will combine fission foil and metallic activation foil reaction rate ratio results from both the first and second higher power irradiation and reaction rates for a final spectral adjustment.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗
DOE OSTI2025

TEX-Chlorine Assemblies: Highly Enriched Uranium Plates with Sodium Chloride Absorbers Using Polyethylene Moderator and Polyethylene Reflector

This evaluation documents highly enriched uranium (HEU) experimental critical configurations with polyethylene moderators and sodium chloride absorbers conducted as part of the United States Nuclear Criticality Safety Program’s Thermal/Epithermal eXperiments (TEX) program. HEU-MET-MIXED-021 provides the benchmark evaluation of five TEX experiments designed to establish baseline configurations with HEU Jemima plates moderated by high density polyethylene (HDPE). The TEX-HEU experiments were designed to cover five different fission energy regimes by varying the thickness of the interstitial HDPE moderator, with varying fractions of thermal, intermediate, and fast fissions, and to be easily modified to accommodate test materials of interest. HEU-MET-INTER-013 documents the first TEX-HEU variation, incorporating hafnium in seven different experimental configurations. This evaluation covers an additional variant that incorporates absorber plates of compacted high-purity sodium chloride salt. These experiments were motivated by a criticality safety need for validation data for uranium purification by means of electrorefining with chloride salts, especially thermal and intermediate energy configurations resulting from moderator upset conditions, and their design was optimized by matching sensitivity profiles from application cases. All three experimental configurations are judged to be acceptable as benchmark cases. The main parameter varied between the configurations is the thickness of the polyethylene moderators and the sodium chloride absorbers between the HEU plates. Varying the thickness of the polyethylene tunes the neutron energy spectrum between majority thermal (Case 1 and 2) and intermediate (Case 3). The fission fractions, presented in Table 1, are determined calculationally. Case 3 is cross listed as HEU-MET-INTER-014.

42 ENGINEERING↗
DOE OSTI2023

Genetic determinants of switchgrass-root-associated microbiota in field sites spanning its natural range

A fundamental goal in plant microbiome research is to determine the relative impacts of host and environmental effects on root microbiota composition, particularly how host genotype impacts bacterial community composition. Most studies characterizing the effect of plant genotype on root microbiota undersample host genetic diversity and grow plants outside of their native ranges, making the associations between host and microbes difficult to interpret. Here, we characterized the root microbiota of a large diversity panel of switchgrass, a North American native C4 bioenergy crop, in three field locations spanning its native range. Our data, composed of 1,961 samples, suggest that field location is the primary determinant of microbiome composition; however, substantial heritable variation is widespread across bacterial taxa, especially those in the Sphingomonadaceae family. Despite diverse compositions, relatively few highly prevalent taxa make up the majority of the switchgrass root microbiota, a large fraction of which is shared across sites. Local genotypes preferentially recruit/filter for local microbes, supporting the idea of affinity between local plants and their microbiota. Using genome-wide association, we identified loci impacting the abundance of >400 microbial strains and found an enrichment of genes involved in immune responses, signaling pathways, and secondary metabolism. We found loci associated with over half of the core microbiota (i.e., microbes in >80% of samples), regardless of field location. Finally, we show a genetic relationship between a basal plant immunity pathway and relative abundances of root microbiota. Furthermore, this study brings us closer to harnessing and manipulating beneficial microbial associations via host genetics.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Evaluation of Protein Extraction Methods for Metaproteomic Analyses of Root-Associated Microbes

Metaproteomics is a powerful tool for the characterization of metabolism, physiology, and functional interactions in microbial communities, including plant-associated microbiota. However, the metaproteomic methods that have been used to study plant-associated microbiota are very laborious and require large amounts of plant tissue, hindering wider application of these methods. We optimized and evaluated different protein extraction methods for metaproteomics of plant-associated microbiota in two different plant species (Arabidopsis and maize). Our main goal was to identify a method that would work with low amounts of input material (40 to 70 mg) and that would maximize the number of identified microbial proteins. We tested eight protocols, each comprising a different combination of physical lysis method, extraction buffer, and cell-enrichment method on roots from plants grown with synthetic microbial communities. We assessed the performance of the extraction protocols by liquid chromatography-tandem mass spectrometry–based metaproteomics and found that the optimal extraction method differed between the two species. For Arabidopsis roots, protein extraction by beating whole roots with small beads provided the greatest number of identified microbial proteins and improved the identification of proteins from gram-positive bacteria. For maize, vortexing root pieces in the presence of large glass beads yielded the greatest number of microbial proteins identified. Based on these data, we recommend the use of these two methods for metaproteomics with Arabidopsis and maize. Furthermore, detailed descriptions of the eight tested protocols will enable future optimization of protein extraction for metaproteomics in other dicot and monocot plants.

59 BASIC BIOLOGICAL SCIENCES↗