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At least 649 records · Page 36

Chloroplast Stress Signals: Control of Retrograde Signaling, Chloroplast Turn-Over, and Cell Fate Decisions

Chloroplasts (photosynthetic plastids) are semiautonomous organelles that contain their own small genomes. The proteomes of chloroplasts, however, are a mixture of plastid and nuclear-encoded proteins. Chloroplasts perform photosynthesis, which is prone to damaging the organelles, leading to the production of reactive oxygen species (ROS) that damage the cell under environmental stresses. Thus, for the cell to maintain proper chloroplast function, efficient photosynthesis, and avoid ROS damage, it relies on complex crosstalk between the chloroplast, the nucleus, other organelles within the cell, and the cytoplasm in between. This communication involves retrograde signals from chloroplasts to control nuclear gene expression, programmed cell death (PCD), and chloroplast degradation. Here we review these signals with an emphasis on the roles of the ROS singlet oxygen ( 1 O 2 ) and plastid gene expression. We cover (1) recent work on understanding how multiple 1 O 2 signaling pathways can be initiated within stressed chloroplasts, (2) how individualized post-translational regulatory systems allow chloroplasts to control their proteomes and degradation, and (3) how chloroplast signals ultimately control cell fate decisions, such as PCD, senescence, and vacuole-mediated degradation of chloroplasts (chloroplast quality control). Overall, this chapter discusses how chloroplasts can act as environmental sensors for the cell and allow plants to acclimate to stress and thrive in dynamic environments.

59 BASIC BIOLOGICAL SCIENCES↗

An End-to-End Framework for Verifying and Validating Manufacturing Design Integrity

Cyber attacks on networked automated manufacturing systems can severely impact part quality. In fact, malicious modifications may be introduced at any point during the manufacturing lifecycle. Therefore, it is vital to verify and validate that manufactured parts conform to their designs. This chapter describes a formal, end-to-end framework that verifies and validates the design integrity of manufactured parts by considering all potential points of alteration during precision manufacturing processes. The framework prevents unauthorized changes to computer-aided designs, verifies the correctness of translations from CAD models to G-code, maintains the integrity of G-code transferred to manufacturing machines, verifies the runtime execution of G-code and part geometry, and considers the contexts of manufacturing machine operations and how manufactured parts could be altered.

Jablonski, Matthew [Cybersecurity Manufacturing In↗

ChatPORT: Fine-Tuned LLM for Easy Code {PORT}ing

Fine-tuning existing LLMs for specialized tasks has become a very attractive alternative due to its low cost and quick development cycle. With many pre-trained LLMs available, it is an increasingly complex task to choose the correct model as the starting point or base model. In this work we discuss ChatPORT - a specialized fine-tuned LLM geared towards providing correctly translated codes from one programming model to another. We evaluate a number of base models and compare and contrast their features and characteristics that make them a viable starting point. In this paper, we focus on the OpenMP offload porting capabilities of ChatPORT. We build our training data using kernels from the Heterogeneous Computing Benchmarks (HeCBench) [12] and the OpenMP Validation and Verification suite [5] to fine-tune the base models. We then test the model using unseen kernels extracted from the HeCBench benchmark suite. Our results show that: (1) not all open LLMs geared towards HPC are aware of programming models like OpenMP, (2) although all base models benefit from fine-tuning they learn differently and produce different correctness rates, (3) depending on the memory size and compute resource available, different base models can be used for fine-tuning without significantly affecting the quality of transpiled code they generate, (4) fine-tuning improved the correctness rate of the LLM by an average of 43.2%, and (5) feedback-based training data further increased the correctness rate by an average of 6% over the LLMs tested.

Pophale, Swaroop [ORNL] (ORCID:0000000185446367)↗

DevOps Pragmatic Practices and Potential Perils in Scientific Software Development

The DevOps movement, which aims to accelerate the continuous delivery of high-quality software, has taken a leading role in reshaping the software industry. Likewise, there is growing interest in applying DevOps tools and practices in the domains of computational science and engineering (CSE) to meet the ever-growing demand for scalable simulation and analysis. Translating insights from industry to research computing, however, remains an ongoing challenge; DevOps for science and engineering demands adaptation and innovation in those tools and practices. There is a need to better understand the challenges faced by DevOps practitioners in CSE contexts in bridging this divide. To that end, we conducted a participatory action research study to collect and analyze the experiences of DevOps practitioners at a major US national laboratory through the use of storytelling techniques. We share lessons learned and present opportunities for future investigation into DevOps practice in the CSE domain.

97 MATHEMATICS AND COMPUTING↗

Corrected calculation for the non-local solution to the g − 2 anomaly and novel results in non-local QED

We provide the corrected calculation of the (g − 2) μ in non-local QED previously done in the literature. In specific, we show the proper technique for calculating loops in non-local QED and use it to find the form factors F 1 (q 2 ) and F 2 (q 2 ) in non-local QED. We also utilize this technique to calculate some novel results in non-local QED, including calculating the correction to the photon self-energy, the modification to the classical Coulomb potential, the modification to the energy levels of the hydrogen atom, and the contribution to the Lamb shift. We also discuss charge dequantization through non-locality, and show that the experimental bounds on the electric charge on Dirac neutrinos, translate into strong flavor-dependent bounds on the scale on non-locality that range between 10 5 −10 10 TeV. We also discuss the inconsistencies of unrenormalized non-local Quantum Field Theories (QFTs) and the need for renormalizing them, even when they are free from UV divergences.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Local Poincaré algebra from quantum chaos

The local two-dimensional Poincaré algebra near the horizon of an eternal AdS black hole, or in proximity to any bifurcate Killing horizon, is generated by the Killing flow and outward null translations on the horizon. In holography, this local Poincaré algebra is reflected as a pair of unitary flows in the boundary Hilbert space whose generators under modular flow grow and decay exponentially with a maximal Lyapunov exponent. This is a universal feature of many geometric vacua of quantum gravity. To explain this universality, we show that a two-dimensional Poincaré algebra emerges in any quantum system that has von Neumann subalgebras associated with half-infinite modular time intervals (modular future and past subalgebras) in a limit analogous to the near-horizon limit. In ergodic theory, quantum dynamical systems with future or past algebras are called quantum K-systems. The surprising statement is that modular K-systems are always maximally chaotic. Interacting quantum systems in the thermodynamic limit and large N theories above the Hawking-Page phase transition are examples of physical theories with future/past subalgebras. We prove that the existence of (modular) future/past von Neumann subalgebras also implies a second law of (modular) thermodynamics and the exponential decay of (modular) correlators. We generalize our results from the modular flow to any dynamical flow with a positive generator and interpret the positivity condition as quantum detailed balance.

79 ASTRONOMY AND ASTROPHYSICS↗

Search for nonresonant new physics signals in high-mass dilepton events produced in association with b-tagged jets in proton-proton collisions at $\sqrt{s}=13$ TeV

A search for nonresonant new physics phenomena in high-mass dilepton events produced in association with b-tagged jets is performed using proton-proton collision data collected in 2016–2018 by the CMS experiment at the CERN LHC, at a center-of-mass energy of 13 TeV corresponding to an integrated luminosity of 138 fb −1 . The analysis considers two effective field theory models with dimension-six operators; involving four-fermion contact interactions between two leptons (ℓℓ, electrons or muons) and b or s quarks (bbℓℓ and bsℓℓ). Two lepton flavor combinations (ee and μμ) are required and events are classified as having 0, 1, or ≥2 b-tagged jets in the final state. No significant excess is observed over the standard model backgrounds. Upper limits are set on the production cross section of the new physics signals. These translate into lower limits on the energy scale Λ of 6.9 to 9.0 TeV in the bbℓℓ model, depending on model parameters, and on the ratio of energy scale and effective coupling, Λ/g*, of 2.0 to 2.6 TeV in the bsℓℓ model. Lepton flavor universality is also tested by comparing the dielectron (ee) and dimuon (μμ) mass spectra for different b-tagged jet multiplicities. No significant deviation from the standard model expectation of unity is observed.

Beyond Standard Model↗

On duality of color and kinematics in (A)dS momentum space

We explore color-kinematic duality for tree-level AdS/CFT correlators in momentum space. We start by studying the bi-adjoint scalar in AdS at tree-level as an illustrative example. We follow this by investigating two forms of color-kinematic duality in Yang-Mills theory, the first for the integrated correlator in AdS 4 and the second for the integrand in general AdS d +1 . For the integrated correlator, we find color-kinematics does not yield additional relations among n -point, color-ordered correlators. To study color-kinematics for the AdS d +1 Yang-Mills integrand, we use a spectral representation of the bulk-to-bulk propagator so that AdS diagrams are similar in structure to their flat space counterparts. Finally, we study color KLT relations for the integrated correlator and double-copy relations for the AdS integrand. We find that double-copy in AdS naturally relates the bi-adjoint theory in AdS d +3 to Yang-Mills in AdS d +1 . We also find a double-copy relation at three-points between Yang-Mills in AdS d +1 and gravity in AdS d– 1 and comment on the higher-point generalization. By analytic continuation, these results on AdS/CFT correlators can be translated into statements about the wave function of the universe in de Sitter.

gauge-gravity correspondence↗

Broadband phonon production from axion absorption

We show that axion dark matter in the range meV ≲ m a ≲ 100 meV can incoherently excite phonons in crystal targets with unpolarised nuclear spins. This can occur through its coupling to nuclear spins and/or through its induced time-dependent electric dipole moment in nuclei. Due to the random orientation of the nuclear spins, translation symmetry is broken in the phonon effective theory, allowing axion absorption to create phonons with unrestricted momentum. The absorption rate is therefore proportional to the phonon density of states, which generically has support across a wide range of energies, allowing for a broadband detection scheme. We calculate the absorption rate for solid H 2 , D 2 , Al 2 O 3 , GaAs, H 2 O, D 2 O, Be and Li 2 O, and find that materials containing light, non-zero spin nuclei are the most promising. The predicted rates for the QCD axion are of the order of a few events / 10 kg-year exposure, setting an ambitious target for the required exposure and background suppression.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Infinite matrix product states for (1 + 1)-dimensional gauge theories

We present a matrix product operator construction that allows us to represent the lattice Hamiltonians of (abelian or non-abelian) gauge theories in a local and manifestly translation-invariant form. In particular, we use symmetric matrix product states and introduce link-enhanced matrix product operators (LEMPOs) that can act on both the physical and virtual spaces of the matrix product states. This construction allows us to study Hamiltonian lattice gauge theories on infinite lattices. As examples, we show how to implement this method to study the massless and massive one-flavor Schwinger model and adjoint QCD 2 .

confinement↗

$T\overline{T}$ deformations and the width of fundamental particles

We provide a simple geometric meaning for deformations of so-called $T\overline{T}$ type in relativistic and non-relativistic systems. Deformations by the cross products of energy and momentum currents in integrable quantum field theories are known to modify the thermodynamic Bethe ansatz equations by a “CDD factor”. In turn, CDD factors may be interpreted as additional, fixed shifts incurred in scattering processes: a finite width added to the fundamental particles (or, if negative, to the free space between them). We suggest that this physical effect is a universal way of understanding $T\overline{T}$ deformations, both in classical and quantum systems. We first show this in non-relativistic systems, with particle conservation and translation invariance, using the deformation formed out of the densities and currents of particles and momentum. This holds at the level of the equations of motion, and for any interaction potential, integrable or not. We then argue, and show by similar techniques in free relativistic particle systems, that $T\overline{T}$ deformations of relativistic systems produce the equivalent phenomenon, accounting for length contractions. We also show that, in both the relativistic and non-relativistic cases, the width of particles is equivalent to a state-dependent change of metric, where the distance function discounts the particles’ widths, or counts the additional free space. This generalises and explains the known field-dependent coordinate change describing $T\overline{T}$ deformations. The results connect such deformations with generalised hydrodynamics, where the relations between scattering shifts, widths of particles and state-dependent changes of metric have been established.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Comments on the double cone wormhole

In this paper we revisit the double cone wormhole introduced by Saad, Shenker and Stanford (SSS), which was shown to reproduce the ramp in the spectral form factor. As a first approximation we can say that this solution computes Tr[e –iKT ], a trace of the “evolution” operator that generates Schwarzschild time translations on the two sided wormhole geometry. This point of view leads to a simple way to compute the normalization factor of the wormhole. When we have bulk matter fields, SSS suggested using a modified evolution K ~ which involves a slightly complex geometry, so that we are really computing Tr[e –iK ~ T ]. We argue that, for general black holes, the spectrum of K ~ is given by quasinormal mode frequencies. We explain that this reproduces various features that were previously predicted from the spectral form factor on hydrodynamics grounds. We also give a general algebraic construction of the modified boost in terms of operators constructed from half sided modular inclusions. For the special case of JT gravity, we work out the backreaction of matter on the geometry of the double cone and find that it deforms the geometry in an undesirable direction. We finally give some comments on the possible physical interpretation of K ~ .

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Implementing the finite-volume three-pion scattering formalism across all non-maximal isospins

We present a numerical exploration of the relativistic-field-theory (RFT) formalism for three pions with all possible values of non-maximal isospin, I πππ = 2, 1 and 0. Using the generic-isospin extension of the RFT formalism [1] and applying our open-source Python library to implement the framework, we predict a range of three-pion energies for illustrative values of the two-to-two scattering amplitudes for various finite-volume irreps also with non-zero total momentum P in the finite-volume frame. The results restrict attention to the case of a vanishing intrinsic three-body interaction so that the spectra can be understood as a baseline. In future lattice QCD calculations, deviations from these values will be translated into evidence for intrinsic three-body effects in the various scattering channels.

hadronic spectroscopy↗

The second Higgs at the lifetime frontier

We assess the current coverage and the future discovery potential of LHC searches for heavy Higgs bosons decaying into long-lived particles (LLPs), focusing primarily on the production of pairs of LLPs with hadronic final states. These signatures are generic in dark sectors where a heavy scalar decays into pairs of lighter states which subsequently mix with the Standard Model Higgs. We show that a handful of existing analyses provide broad coverage of LLP decay lengths ranging from millimeters to tens of meters, and explore the complementarity between searches for displaced and prompt final states in several simplified models. For both heavy singlet and heavy doublet scalars, LLP searches typically provide the leading sensitivity in current data and exhibit the strongest discovery potential in future LHC runs. We further translate the impact of these searches into the parameter space of various Twin Higgs models, demonstrating that LLP searches are a promising avenue for discovering a Twin Higgs with displaced decays. Finally, we propose a variety of additional search channels that would improve coverage of the second Higgs at the lifetime frontier.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

D-instanton induced superpotential

We use string field theory to fix the normalization of the D-instanton corrections to the superpotential involving the moduli fields of type II string theory compactified on an orientifold of a Calabi-Yau threefold in the absence of fluxes. We focus on O(1) instantons whose only zero modes are the four bosonic modes associated with translation of the instanton in non-compact directions and a pair of fermionic zero modes associated with the two supercharges broken by the instanton. We work with a generic superconformal field theory and express our answer in terms of the spectrum of open strings on the instanton. We analyse the contribution of multi-instantons of this kind to the superpotential and argue that it vanishes when background fluxes are absent.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Celestial amplitudes from UV to IR

Celestial amplitudes represent 4D scattering of particles in boost, rather than the usual energy-momentum, eigenstates and hence are sensitive to both UV and IR physics. We show that known UV and IR properties of quantum gravity translate into powerful constraints on the analytic structure of celestial amplitudes. For example the soft UV behavior of quantum gravity is shown to imply that the exact four-particle scattering amplitude is meromorphic in the complex boost weight plane with poles confined to even integers on the negative real axis. Would-be poles on the positive real axis from UV asymptotics are shown to be erased by a flat space analog of the AdS resolution of the bulk point singularity. The residues of the poles on the negative axis are identified with operator coefficients in the IR effective action. Far along the real positive axis, the scattering is argued to grow exponentially according to the black hole area law. Exclusive amplitudes are shown to simply factorize into conformally hard and conformally soft factors. The soft factor contains all IR divergences and is given by a celestial current algebra correlator of Goldstone bosons from spontaneously broken asymptotic symmetries. The hard factor describes the scattering of hard particles together with the boost-eigenstate clouds of soft photons or gravitons required by asymptotic symmetries. These provide an IR safe S-matrix for the scattering of hard particles.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Impact of improved energy resolution on DUNE sensitivity to neutrino non-standard interactions

The full physics potential of the next-generation Deep Underground Neutrino Experiment (DUNE) is still being explored. In particular, there have been some recent studies on the possibility of improving DUNE’s neutrino energy reconstruction. The main motivation is that a better determination of the neutrino energy in an event-by-event basis will translate into an improved measurement of the Dirac C P phase and other neutrino oscillation parameters. To further motivate studies and improvements on the neutrino energy reconstruction, we evaluate the impact of energy resolution at DUNE on an illustrative new physics scenario, viz. non-standard interactions (NSI) of neutrinos with matter. We show that a better energy resolution in comparison to the ones given in the DUNE conceptual and technical design reports may significantly enhance the experimental sensitivity to NSI, particularly when degeneracies are present. While a better reconstruction of the first oscillation peak helps disentangling standard C P effects from those coming from NSIs, we find that the second oscillation peak also plays a nontrivial role in improving DUNE’s sensitivity.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

$T\overline{T}$ deformations of supersymmetric quantum mechanics

We define a manifestly supersymmetric version of the $T\overline{T}$ deformation appropriate for a class of (0 + 1)-dimensional theories with $\mathcal{N}$ = 1 or $\mathcal{N}$ = 2 supersymmetry, including one presentation of the super-Schwarzian theory which is dual to JT supergravity. These deformations are written in terms of Noether currents associated with translations in superspace, so we refer to them collectively as f($\mathcal{Q}$) deformations. We provide evidence that the f($\mathcal{Q}$) deformations of $\mathcal{N}$ = 1 and $\mathcal{N}$ = 2 theories are on-shell equivalent to the dimensionally reduced supercurrent-squared deformations of 2d theories with $\mathcal{N}$ = (0, 1) and $\mathcal{N}$ = (1, 1)supersymmetry, respectively. In the $\mathcal{N}$ = 1 case, we present two forms of the f($\mathcal{Q}$) deformation which drive the same flow, and clarify their equivalence by studying the analogous equivalent deformations in the non-supersymmetric setting.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗