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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 649 records · Page 36
All sourcesNASA NTRSDOE OSTI
DOE OSTI2020

CoreCruncher : Fast and Robust Construction of Core Genomes in Large Prokaryotic Data Sets

The core genome represents the set of genes shared by all, or nearly all, strains of a given population or species of prokaryotes. Inferring the core genome is integral to many genomic analyses, however, most methods rely on the comparison of all the pairs of genomes; a step that is becoming increasingly difficult given the massive accumulation of genomic data. Here, we present CoreCruncher; a program that robustly and rapidly constructs core genomes across hundreds or thousands of genomes. CoreCruncher does not compute all pairwise genome comparisons and uses a heuristic based on the distributions of identity scores to classify sequences as orthologs or paralogs/xenologs. Although it is much faster than current methods, our results indicate that our approach is more conservative than other tools and less sensitive to the presence of paralogs and xenologs. CoreCruncher is freely available from: https://github.com/lbobay/CoreCruncher. CoreCruncher is written in Python 3.7 and can also run on Python 2.7 without modification. It requires the python library Numpy and either Usearch or Blast. Certain options require the programs muscle or mafft.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2026

Hybrid Oscillator-Qubit Quantum Processors: Instruction Set Architectures, Abstract Machine Models, and Applications

This tutorial offers a pedagogical guide to hybrid quantum processors that integrate discrete-variable (DV) qubits and continuous-variable (CV) oscillators. Aimed at computer scientists, engineers, and physicists, it provides an overview of the experimental, algorithmic, and architectural aspects of this novel and rapidly developing hardware model. Experimental realizations of this model include superconducting, trapped-ion, and neutral-atom platforms. By combining DV and CV components, hybrid oscillator-qubit processors enable a powerful new paradigm that offers complementary strengths for quantum control, error correction, computation, and simulation. Working toward the goal of a full-stack system connecting applications to CV-DV hardware, we define and formulate abstract machine models and instruction set architectures. These essential abstractions enable codesign of hardware and software, and resource estimation for exploring the potential of current and future hardware for computational and simulation tasks. Using these abstractions, we present both new and existing examples that illustrate the benefits of hybrid CV-DV processors relative to traditional DV-only hardware in computation as well as quantum simulation of physical models. Examples include algorithms for transferring states between DV and CV systems, performing the quantum Fourier transform, and simulation of lattice gauge theories. Relative to qubit-only hardware, the bosonic degrees of freedom natively available in hybrid architectures can substantially reduce the circuit complexity of simulations for physical models containing bosons. A key technique is the extension of quantum signal processing ideas to CV-DV systems. This work is intended to serve as a timely and comprehensive guide to this relatively unexplored yet promising approach to quantum computation and to provide a road map to guide future development.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2024

Code conversion with the quantum Golay code for a universal transversal gate set

The [[7,1,3]] Steane code and [[23,1,7]] quantum Golay code have been identified as good candidates for fault-tolerant quantum computing via code concatenation. These two codes have transversal implementations of all Clifford gates but require some other scheme for fault-tolerant T gates. Using magic states, Clifford operations, and measurements is one common scheme, but magic-state distillation can have a large overhead. Code conversion is one avenue for implementing a universal gate set fault tolerantly without the use of magic-state distillation. Analogously to how the [[7,1,3]] Steane code can be fault tolerantly converted to and from the [[15,1,3]] Reed-Muller code which has a transversal T gate, the [[23,1,7]] Golay code can be converted to a [[95,1,7]] triorthogonal code with a transversal T gate. Further, a crucial ingredient of this procedure is the [[49,1,5]] triorthogonal code, which can itself be seen as being related to the self-dual [[17,1,5]] two-dimensional color code. Additionally, a method for code conversion based on a transversal CNOT between the codes, rather than stabilizer measurements, is described.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2022

Characterizing Midcircuit Measurements on a Superconducting Qubit Using Gate Set Tomography

Measurements that occur within the internal layers of a quantum circuit—midcircuit measurements—are a useful quantum-computing primitive, most notably for quantum error correction. Midcircuit measurements have both classical and quantum outputs, so they can be subject to error modes that do not exist for measurements that terminate quantum circuits. In this work, we show how to characterize midcircuit measurements, modeled by quantum instruments, using a technique that we call quantum instrument linear gate set tomography (QILGST). We then apply this technique to characterize a dispersive measurement on a superconducting transmon qubit within a multiqubit system. By varying the delay time between the measurement pulse and subsequent gates, we explore the impact of residual cavity photon population on measurement error. QILGST can resolve different error modes and quantify the total error from a measurement; in our experiment, for delay times above 1000 ns we measure a total error rate (i.e., half diamond distance) of ϵ$\diamond$ = 8.1 ± 1.4%, a readout fidelity of 97.0 ± 0.3%, and output quantum-state fidelities of 96.7 ± 0.6% and 93.7 ± 0.7 % when measuring 0 and 1, respectively.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2021

Dynamics of a fractal set of first-order magnetic phase transitions in frustrated Lu 2 CoMnO 6

The axial next-nearest-neighbor Ising model predicts a fractal (infinite) set of phases with incommensurate wave vectors that are separated by first-order phase boundaries. This complexity results from a simple frustration condition between nearest- and next-nearest-neighbor interactions along a chain of Ising spins. Using x-ray photon correlation spectroscopy (XPCS), we investigate the surprising antiferromagnetic dynamics that emerge from such a complex phase diagram over a wide range of temperatures. In this work, we present XPCS measurements of the frustrated magnetic chain compound Lu 2 CoMnO 6 and Monte Carlo simulations. Incommensurate magnetic Bragg peaks slide towards commensurate “up-up-down-down” spin order with decreasing temperature and increasing time. Both simulation and experiment support a counterintuitive “upside-down” temperature dependence of the magnetic dynamics: at higher temperatures in the region of first-order phase boundaries, slower dynamics are observed where the speckle maintains its coherence. At the lowest temperatures, where part of the sample adopts commensurate order, the dynamics speed up and result in fast decoherence.

36 MATERIALS SCIENCE↗
DOE OSTI2024

Modest set of simulations of local-type primordial non-Gaussianity in the DESI era

A measurement of a primordial non-Gaussianity (PNG) signal through late- or early-Universe probes has the potential to transform our understanding of the physics of the primordial Universe. While large-scale structure observables in principle contain vital information, interpreting these measurements is challenging due to poorly understood astrophysical effects. Luckily, N-body simulations, such as the abacuspng set presented in this study, consisting of 9 boxes, each of size L box = 2 Gpc/h and particle mass of 1.01 × 10 10 M ⊙ /h, provide a viable path forward. As validation, we find good agreement between the simulations and our expectations from one-loop perturbation theory (PT) and the "separate universe" method for the matter bispectrum, matter power spectrum and the halo bias parameter associated with PNG, b φ . As a science application, here we investigate the link between halo assembly bias and b φ for halo properties known to play a vital role in accurately predicting galaxy clustering: concentration, shear (environment), and accretion rate. We find a strong response for all three parameters, suggesting that the connection between b φ and the assembly history of halos needs to be taken into account by future PNG analyses. We further perform the first study of the b φ parameter from fits to early DESI data of the luminous red galaxy (LRG) and quasistellar object (QSO) samples and comment on the effect on f NL constraints for the allowed galaxy-halo models (note that σ[f NL ]∝ $\frac{σ[b_φ]}{b_φ}$). We find that the error on f NL is 15, 8, 7 for the LRGs at z = 0.5 and z = 0.8 and QSOs at z = 1.4, respectively, suggesting that a thorough understanding of galaxy assembly bias is warranted so as to perform robust high-precision analysis of local-type PNG with future surveys.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

Symmetric Set of Transport Coefficients for Collisional Magnetized Plasma

Braginskii extended magnetohydrodynamics is used to model transport in collisional astrophysical and high energy density plasmas. We show that commonly used approximations to the α ⊥ and β ⊥ transport coefficients [e.g., Epperlein and Haines, Phys. Fluids 29 , 1029 (1986) ] have a subtle inaccuracy that causes significant artificial magnetic dissipation and discontinuities. This is because magnetic transport actually relies on β ∥ - β ⊥ and α ⊥ - α ∥ , rather than α ⊥ and β ⊥ themselves. We provide fit functions that rectify this problem and thus resolve the discrepancies with kinetic simulations in the literature. Furthermore, then implemented in the g orgon code, they reduce the predicted density asymmetry amplitude at laser ablation fronts. Recognizing the importance of α ⊥ - α ∥ and β ∥ - β ⊥ , we recast the set of coefficients. This makes explicit the symmetry of the magnetic and thermal transport, as well as the symmetry of the coefficients themselves.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2026

Scale setting of SU⁡(𝑁) Yang–Mills theory, topology and large-𝑁 volume independence

We set the scale of SU⁡(𝑁) Yang-Mills theories for 𝑁 =3, 5, 8 and in the large-𝑁 limit via gradient flow, as a first step towards the computation of the large-𝑁 Λ-parameter using step scaling. We adopt twisted boundary conditions to achieve large-𝑁 volume reduction and the Parallel Tempering on Boundary Conditions algorithm to tame topological freezing. This setup allows accurate determinations of the gradient-flow scales down to lattice spacings as fine as ∼0.025 fm for all the explored values of 𝑁, a regime that has never been reached with ergodic algorithms. Moreover, we are able to precisely estimate the finite-size systematics related to topological freezing, and to show the suppression of finite-volume effects expected by virtue of large-𝑁 twisted volume reduction.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2026

High-precision scale setting with the Ω-baryon mass and gradient flow

The gradient-flow scale 𝑤 0 in lattice QCD is determined using the mass of the Ω − baryon to set the physical scale. Nine ensembles using the highly improved staggered quark (HISQ) action with lattice spacings of 0.15 fm down to 0.04 fm are used, seven of which have nearly physical light-quark masses. Electromagnetic corrections to the Ω − mass are defined in order to compute a pure-QCD Ω mass. The final result is 𝑤 0 = 0.17187⁢(68) fm, corresponding to a relative uncertainty of 0.40% and a central value in good agreement with previous calculations in the literature.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2025

Thermal relaxation and the complete set of second-order transport coefficients for the unitary Fermi gas from kinetic theory

We compute the complete set of second-order transport coefficients of the unitary Fermi gas, a dilute gas of spin-1/2 particles interacting via an 𝑠 -wave interaction tuned to infinite scattering length. The calculation is based on kinetic theory and the Chapman-Enskog method at second order in the Knudsen expansion. We take into account the exact two-body collision integral. We extend previous results on second-order coefficients related to shear stress by including terms related to heat flow and gradients of the fugacity. We confirm that the thermal relaxation time is given by the simple estimate 𝜏 𝜅 = 𝜅⁢𝑚/(𝑐 𝑃 ⁢𝑇) even if the full collision kernel is taken into account. Furthermore, 𝜅 is the thermal conductivity, 𝑚 is the mass of the particles, 𝑐𝑃 is the specific heat at constant pressure, and 𝑇 is the temperature.

Kinetic theory↗
DOE OSTI2023

A MHz X-ray diffraction set-up for dynamic compression experiments in the diamond anvil cell

An experimental platform for dynamic diamond anvil cell (dDAC) research has been developed at the High Energy Density (HED) Instrument at the European X-ray Free Electron Laser (European XFEL). Advantage was taken of the high repetition rate of the European XFEL (up to 4.5 MHz) to collect pulse-resolved MHz X-ray diffraction data from samples as they are dynamically compressed at intermediate strain rates (≤10 3 s −1 ), where up to 352 diffraction images can be collected from a single pulse train. The set-up employs piezo-driven dDACs capable of compressing samples in ≥340 µs, compatible with the maximum length of the pulse train (550 µs). Results from rapid compression experiments on a wide range of sample systems with different X-ray scattering powers are presented. A maximum compression rate of 87 TPa s −1 was observed during the fast compression of Au, while a strain rate of ∼1100 s −1 was achieved during the rapid compression of N 2 at 23 TPa s −1 .

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2021

Intrusion Detection for Cybersecurity of Power Electronics Dominated Grids: Inverters PQ Set-Points Manipulation

This work provides cybersecurity analytics for a high photovoltaic (PV) penetrated distribution network, representing future power electronics dominated grid (PEDG). Firstly, the impact of active and reactive power (PQ) set-points manipulation on the network is studied. Then, an intrusion detection system (IDS) is developed for identifying the potentially compromised PV inverters in the network. The proposed IDS is based on defining the normal, safe, and abnormal operation regions of the PV inverters from point of view of the steady state voltage stability of the network. These three-operation regions are identified by utilizing active power, reactive power, and voltage (PQV) limits of each specific grid-following inverter in the network. Each grid-following inverter's PQV contour includes the information of network topology, inverter ratings, and inverter controller. The developed PQ limits are integrated into the centralized secondary control layer for realization of the proposed IDS. Furthermore, the proposed secondary control layer is capable of providing remedial actions during an anomaly event to enhance the grid resiliency. The theoretical analyses are verified by several attack scenarios for a network of grid-following inverters.

41 EE - Solar Energy Technologies Office (EE-4S)↗
DOE OSTI2024

Optimal Droop Setting for Congestion Reduction in a 100% Grid-Forming Inverter-based Power System

he high penetration of inverter-based resources (IBRs) introduces new challenges to power systems due to the complex inverter control. However, IBRs can be configured to maximize their benefits to improve system resilience and reliability. This paper proposes a steady-state optimization model that aims to mitigate transmission congestion in a 100% grid- forming (GFM) IBR-based power system. This goal is achieved by determining the optimal droop settings for the GFM IBRs under different congestion conditions due to renewable energy and load variations. The numerical solution is rigorously verified by a high-fidelity model of the IEEE 39-bus test system with detailed GFM IBR control in the time-domain electromagnetic transient (EMT) simulation tool PSCAD. The numerical solution and simulation results show a significant congestion reduction while meeting all other operating requirements. It is also observed that the numerical solving time is substantially less compared to the EMT simulation time.

Nguyen, Quan H.↗
DOE OSTI2021

Electron ptychography achieves atomic-resolution limits set by lattice vibrations

Transmission electron microscopes use electrons with wavelengths of a few picometers, potentially capable of imaging individual atoms in solids at a resolution ultimately set by the intrinsic size of an atom. However, owing to lens aberrations and multiple scattering of electrons in the sample, the image resolution is reduced by a factor of 3 to 10. By inversely solving the multiple scattering problem and overcoming the electron-probe aberrations using electron ptychography, we demonstrate an instrumental blurring of less than 20 picometers and a linear phase response in thick samples. The measured widths of atomic columns are limited by thermal fluctuations of the atoms. As a result, our method is also capable of locating embedded atomic dopant atoms in all three dimensions with subnanometer precision from only a single projection measurement.

42 ENGINEERING↗
DOE OSTI2022

Quantum optimization of maximum independent set using Rydberg atom arrays

Realizing quantum speedup for practically relevant, computationally hard problems is a central challenge in quantum information science. Using Rydberg atom arrays with up to 289 qubits in two spatial dimensions, we experimentally investigate quantum algorithms for solving the maximum independent set problem. We use a hardware-efficient encoding associated with Rydberg blockade, realize closed-loop optimization to test several variational algorithms, and subsequently apply them to systematically explore a class of graphs with programmable connectivity. We find that the problem hardness is controlled by the solution degeneracy and number of local minima, and we experimentally benchmark the quantum algorithm’s performance against classical simulated annealing. On the hardest graphs, we observe a superlinear quantum speedup in finding exact solutions in the deep circuit regime and analyze its origins.

Science & Technology - Other Topics↗
DOE OSTI2025

RB-TnSeq barcode abundance data sets for Novosphingobium aromaticivorans grown on the β-5-linked aromatic dimer dehydrodiconiferyl alcohol

ABSTRACT A randomly barcoded transposon insertion sequencing (RB-TnSeq) library of Novosphingobium aromaticivorans DSM12444 was grown in media containing either glucose or the β-5-linked aromatic dimer dehydrodiconiferyl alcohol (DC-A) as the sole carbon source. The cultures were grown to saturation and then sequenced, yielding the barcode abundance data sets presented here.

Metz, Fletcher↗
DOE OSTI2021

D2U: Data Driven User Emulation for the Enhancement of Cyber Testing, Training, and Data Set Generation

Whether testing intrusion detection systems, conducting training exercises, or creating data sets to be used by the broader cybersecurity community, realistic user behavior is a critical component of a cyber range. Existing methods either rely on network level data or replay recorded user actions to approximate real users in a network. Our work is the first to produce generative models trained on actual user data (sequences of application usage) collected on endpoints. Once trained to the user's behavioral data, these models can generate novel sequences of actions %that appear to come from the same distribution as the training data. These sequences of actions are then fed to our custom software via configuration files, which replicate those behaviors on end devices. Notably, our models are platform agnostic and could generate behavior data for any emulation software package. In this paper we present our model generation process, software architecture, and an initial evaluation of the fidelity of our models. Our software is currently deployed in a cyber range to help evaluate the efficacy of defensive cyber technologies. We suggest additional ways that the cyber community as a whole can benefit from more realistic user behavior emulation. The data used to train our model, as well as sample configuration files produced by the model, are available at [redacted].

Oesch, T↗