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At least 649 records · Page 36

Estimation of an origin–destination table for U.S. imports of waterborne containerized freight

This study presents a probabilistic origin–destination table for waterborne containerized imports. The analysis makes use of 2012 Port Import/Export Reporting Service data, 2012 Surface Transportation Board waybill data, a gravity model, and information on the landside transportation mode split associated with specific ports. This analysis suggests that about 70% of the origin–destination table entries have a coefficient of variation of less than 20%. This 70% of entries is associated with about 78% of the total volume. This analysis also makes evident the importance of rail interchange points in Chicago, Illinois; Memphis, Tennessee; Dallas, Texas; and Kansas City, Missouri, in supporting the transportation of containerized goods from Asia through West Coast ports to the eastern United States.

97 MATHEMATICS AND COMPUTING↗

Toward a Generalizable Framework of Disturbance Ecology Through Crowdsourced Science

Disturbances fundamentally alter ecosystem functions, yet predicting their impacts remains a key scientific challenge. While the study of disturbances is ubiquitous across many ecological disciplines, there is no agreed-upon, cross-disciplinary foundation for discussing or quantifying the complexity of disturbances, and no consistent terminology or methodologies exist. This inconsistency presents an increasingly urgent challenge due to accelerating global change and the threat of interacting disturbances that can destabilize ecosystem responses. By harvesting the expertise of an interdisciplinary cohort of contributors spanning 42 institutions across 15 countries, we identified an essential limitation in disturbance ecology: the word ‘disturbance’ is used interchangeably to refer to both the events that cause, and the consequences of, ecological change, despite fundamental distinctions between the two meanings. In response, we developed a generalizable framework of ecosystem disturbances, providing a well-defined lexicon for understanding disturbances across perspectives and scales. The framework results from ideas that resonate across multiple scientific disciplines and provides a baseline standard to compare disturbances across fields. This framework can be supplemented by discipline-specific variables to provide maximum benefit to both inter- and intra-disciplinary research. To support future syntheses and meta-analyses of disturbance research, we also encourage researchers to be explicit in how they define disturbance drivers and impacts, and we recommend minimum reporting standards that are applicable regardless of scale. Finally, we discuss the primary factors we considered when developing a baseline framework and propose four future directions to advance our interdisciplinary understanding of disturbances and their social-ecological impacts: integrating across ecological scales, understanding disturbance interactions, establishing baselines and trajectories, and developing process-based models and ecological forecasting initiatives. Our experience through this process motivates us to encourage the wider scientific community to continue to explore new approaches for leveraging Open Science principles in generating creative and multidisciplinary ideas.

54 ENVIRONMENTAL SCIENCES↗

Soft Ionic Electroactive Polymer Actuators with Tunable Non-Linear Angular Deformation

The most rational approach to fabricate soft robotics is the implementation of soft actuators. Conventional soft electromechanical actuators exhibit linear or circular deformation, based on their design. This study presents the use of conjugated polymers, Poly(3,4- ethylenedioxythiophene)-poly(styrenesulfonate) (PEDOT:PSS) to locally vary ion permeability of the ionic electroactive polymer actuators and manipulate ion motion through means of structural design to realize intrinsic angular deformation. Such angular deformations are closer to biomimetic systems and have potential applications in bio-robotics. Electrochemical studies reveal that the mechanism of actuation is mainly associated with the charging of electric double layer (EDL) capacitors by ion accumulation and the PEDOT:PSS layer’s expansion by ion interchange and penetration. Dependence of actuator deformation on structural design is studied experimentally and conclusions are verified by analytical and finite element method modeling. The results suggest that the ion-material interactions are considerably dominated by the design of the drop-cast PEDOT:PSS on Nafion.

36 MATERIALS SCIENCE↗

A microfluidic platform for precision small-volume sample processing and its use to size separate biological particles with an acoustic microdevice [Precision size separation of biological particles in small-volume samples by an acoustic microfluidic system]

Here, a major advantage of microfluidic devices is the ability to manipulate small sample volumes, thus reducing reagent waste and preserving precious sample. However, to achieve robust sample manipulation it is necessary to address device integration with the macroscale environment. To realize repeatable, sensitive particle separation with microfluidic devices, this protocol presents a complete automated and integrated microfluidic platform that enables precise processing of 0.15–1.5 ml samples using microfluidic devices. Important aspects of this system include modular device layout and robust fixtures resulting in reliable and flexible world to chip connections, and fully-automated fluid handling which accomplishes closed-loop sample collection, system cleaning and priming steps to ensure repeatable operation. Different microfluidic devices can be used interchangeably with this architecture. Here we incorporate an acoustofluidic device, detail its characterization, performance optimization, and demonstrate its use for size-separation of biological samples. By using real-time feedback during separation experiments, sample collection is optimized to conserve and concentrate sample. Although requiring the integration of multiple pieces of equipment, advantages of this architecture include the ability to process unknown samples with no additional system optimization, ease of device replacement, and precise, robust sample processing.

42 ENGINEERING↗

CONVERGING SUPERGRANULAR FLOWS AND THE FORMATION OF CORONAL PLUMES

Earlier studies have suggested that coronal plumes are energized by magnetic reconnection between unipolar flux concentrations and nearby bipoles, even though magnetograms sometimes show very little minority-polarity flux near the footpoints of plumes. Here we use high-resolution extreme-ultraviolet (EUV) images and magnetograms from the Solar Dynamics Observatory (SDO) to clarify the relationship between plume emission and the underlying photospheric field. We find that plumes form where unipolar network elements inside coronal holes converge to form dense clumps, and fade as the clumps disperse again. The converging flows also carry internetwork fields of both polarities. Although the minority-polarity flux is sometimes barely visible in the magnetograms, the corresponding EUV images almost invariably show loop-like features in the core of the plumes, with the fine structure changing on timescales of minutes or less. We conclude that the SDO observations are consistent with a model in which plume emission originates from interchange reconnection in converging flows, with the plume lifetime being determined by the ∼1 day evolutionary timescale of the supergranular network. Furthermore, the presence of large EUV bright points and/or ephemeral regions is not a necessary precondition for the formation of plumes, which can be energized even by the weak, mixed-polarity internetwork fields swept up by converging flows.

79 ASTRONOMY AND ASTROPHYSICS↗

A proton-cyclotron wave storm generated by unstable proton distribution functions in the solar wind

We use audification of 0.092 s cadence magnetometer data from the Wind spacecraft to identify waves with amplitudes >0.1 nT near the ion gyrofrequency (∼0.1 Hz) with duration longer than 1 hr during 2008. We present one of the most common types of event for a case study and find it to be a proton-cyclotron wave storm, coinciding with highly radial magnetic field and a suprathermal proton beam close in density to the core distribution itself. Using linear Vlasov analysis, we conclude that the long-duration, large-amplitude waves are generated by the instability of the proton distribution function. The origin of the beam is unknown, but the radial field period is found in the trailing edge of a fast solar wind stream and resembles other events thought to be caused by magnetic field footpoint motion or interchange reconnection between coronal holes and closed field lines in the corona.

79 ASTRONOMY AND ASTROPHYSICS↗

AN INVESTIGATION OF THE SOURCES OF EARTH-DIRECTED SOLAR WIND DURING CARRINGTON ROTATION 2053

In this work we analyze multiple sources of solar wind through a full Carrington Rotation (CR 2053) by analyzing the solar data through spectroscopic observations of the plasma upflow regions and the in situ data of the wind itself. Following earlier authors, we link solar and in situ observations by a combination of ballistic backmapping and potential-field source-surface modeling. We find three sources of fast solar wind that are low-latitude coronal holes. The coronal holes do not produce a steady fast wind, but rather a wind with rapid fluctuations. The coronal spectroscopic data from Hinode ’s Extreme Ultraviolet Imaging Spectrometer show a mixture of upflow and downflow regions highlighting the complexity of the coronal hole, with the upflows being dominant. There is a mix of open and multi-scale closed magnetic fields in this region whose (interchange) reconnections are consistent with the up- and downflows they generate being viewed through an optically thin corona, and with the strahl directions and freeze-in temperatures found in in situ data. At the boundary of slow and fast wind streams there are three short periods of enhanced-velocity solar wind, which we term intermediate based on their in situ characteristics. These are related to active regions that are located beside coronal holes. The active regions have different magnetic configurations, from bipolar through tripolar to quadrupolar, and we discuss the mechanisms to produce this intermediate wind, and the important role that the open field of coronal holes adjacent to closed-field active regions plays in the process.

79 ASTRONOMY AND ASTROPHYSICS↗

Inferring the Heliospheric Magnetic Field Back through Maunder Minimum

Recent solar conditions include a prolonged solar minimum (2005–2009) and a solar maximum that has not fully recovered in terms of the Heliospheric Magnetic Field (HMF) strength when compared to the previous maximum values. These anomalies may indicate that we are entering an era of lower solar activity than observed at other times during the space age. We study past solar grand minima, especially the Maunder period (1645–1715) to gain further insight into grand minima. We find the timescale parameters associated with three processes attributed to the magnetic flux balance in the heliosphere using chi-square analysis. We use HMF time series reconstructed based on geomagnetic data and near-Earth spacecraft measurements (OMNI) data to find the fundamental timescales that influence heliospheric field evolution through conversion or opening of magnetic flux from coronal mass ejections (CMEs) into the ambient heliospheric field, removal or loss of the ambient heliospheric field through magnetic reconnection, and interchange reconnection between CME magnetic flux and ambient heliospheric magnetic flux. We also investigate the existence of a floor in the heliospheric magnetic flux, in the absence of CMEs, and show that a floor ⩽1.49nT is sufficient to successfully describe the HMF evolution. The minimum value for the HMF at 1 au in the model-predicted historic record is 3.13 ± 0.35 nT. Our model results favorably reproduce paleocosmic data and near-Earth spacecraft measurements data and show how the HMF may evolve through periods of extremely low activity.

79 ASTRONOMY AND ASTROPHYSICS↗

Formation and Reconnection of Three-dimensional Current Sheets with a Guide Field in the Solar Corona

We analyze a series of three-dimensional magnetohydrodynamic numerical simulations of magnetic reconnection in a model solar corona to study the effect of the guide-field component on quasi-steady-state interchange reconnection in a pseudostreamer arcade configuration. This work extends the analysis of Edmondson et al. by quantifying the mass density enhancement coherency scale in the current sheet associated with magnetic island formation during the nonlinear phase of plasmoid-unstable reconnection. We compare the results of four simulations of a zero, weak, moderate, and a strong guide field, B{sub GF}/B{sub 0}={0.0,0.1,0.5,1.0}, to quantify the plasmoid density enhancement’s longitudinal and transverse coherency scales as a function of the guide-field strength. We derive these coherency scales from autocorrelation and wavelet analyses, and demonstrate how these scales may be used to interpret the density enhancement fluctuation’s Fourier power spectra in terms of a structure formation range, an energy continuation range, and an inertial range—each population with a distinct spectral slope. We discuss the simulation results in the context of solar and heliospheric observations of pseudostreamer solar wind outflow and possible signatures of reconnection-generated structure.

79 ASTRONOMY AND ASTROPHYSICS↗

Expanding-box Quasilinear Model of the Solar Wind

The expanding-box model of the solar wind has been adopted in the literature within the context of magnetohydrodynamics, hybrid, and full particle-in-cell simulations to investigate the dynamic evolution of the solar wind. The present paper extends such a method to the framework of self-consistent quasilinear kinetic theory. It is shown that the expanding-box quasilinear methodology is largely equivalent to the inhomogeneous steady-state quasilinear model discussed earlier in the literature, but a distinction regarding the description of wave dynamics between the two approaches is also found. The expanding-box quasilinear formalism is further extended to include the effects of a spiraling solar-wind magnetic field as well as collisional age effects. The present finding shows that the expanding-box quasilinear approach and the steady-state global-kinetic models may be employed interchangeably in order to address other more complex problems associated with the solar-wind dynamics.

79 ASTRONOMY AND ASTROPHYSICS↗

Modeling Particle Acceleration and Release from Solar Eruptions

Determining the relative contribution of solar flares versus coronal mass ejections in large solar energetic particle (SEP) events is a long-standing problem. Flare-accelerated particles may travel through complex magnetic fields in the eruption region and escape into interplanetary space, thereby contributing to large SEP events. The process by which flare accelerated particles are released into the heliosphere is poorly understood and yet is critical to advancing our understanding of SEPs. In this work, we address the release problem by solving the focused transport equation in the context of a 2.5D ARMS magnetohydrodynamic simulation of a breakout coronal mass ejection (CME)/flare event. We find that particles accelerated by flare reconnection can be released into interplanetary space through interchange reconnection between closed and open field lines. These particles can contribute directly to SEP events and may become an important seed population for further acceleration by CME-driven shocks. Additionally, we find that the energetic particle fluxes in the inner heliosphere remain elevated for an extended period, allowing them to contribute to SEP acceleration by subsequent CMEs. This study represents the first direct particle modeling of how flare-accelerated particles can contribute to major SEP events.

79 ASTRONOMY AND ASTROPHYSICS↗

Formation of Heliospheric Arcs of Slow Solar Wind

A major challenge in solar and heliospheric physics is understanding the origin and nature of the so-called slow solar wind. The Sun’s atmosphere is divided into magnetically open regions, known as coronal holes, where the plasma streams out freely and fills the solar system, and closed regions, where the plasma is confined to coronal loops. The boundary between these regions extends outward as the heliospheric current sheet (HCS). Measurements of plasma composition strongly imply that much of the slow wind consists of plasma from the closed corona that escapes onto open field lines, presumably by field-line opening or by interchange reconnection. Both of these processes are expected to release closed-field plasma into the solar wind within and immediately adjacent to the HCS. Mysteriously, however, slow wind with closed-field plasma composition is often observed in situ far from the HCS. We use high-resolution, three-dimensional, magnetohydrodynamic simulations to calculate the dynamics of a coronal hole with a geometry that includes a narrow corridor flanked by closed field and is driven by supergranule-like flows at the coronal-hole boundary. These dynamics produce giant arcs of closed-field plasma that originate at the open-closed boundary in the corona, but extend far from the HCS and span tens of degrees in latitude and longitude at Earth. We conclude that such structures can account for the long-puzzling slow-wind observations.

79 ASTRONOMY AND ASTROPHYSICS↗

Impacts of Biofuel Blending on MCCI Ignition Delay with Review of Methods for Defining Cycle-by-Cycle Ignition Points from Noisy Cylinder Pressure Data

Conventional diesel combustion, also known as Mixing-Controlled Compression Ignition (MCCI), is expected to be the primary power source for medium- and heavy-duty vehicles for decades to come. Displacing petroleum-based ultra-low-sulfur diesel (ULSD) as much as possible with low-net-carbon biofuels will become necessary to help mitigate effects on climate change. Neat biofuels may have difficulty meeting current diesel fuel standards but blends of 30% biofuel in ULSD show potential as ‘drop-in’ fuels. These blends must not make significant changes to the combustion phasing of the MCCI process if they are to be used interchangeably with neat ULSD. An important aspect of MCCI phasing is the ignition delay (ID), i.e. the time between the start of fuel injection and the initial premixed autoignition that initiates the MCCI process. Bench experiments can evaluate the expected ignition delay of a fuel via cetane number (CN) or alternative methods such as the indicated cetane number (ICN); however, neither CN nor ICN correlate perfectly with the ignition delay measured in actual engine experiments. Furthermore, there is no standardized methodology on how to quantify MCCI ignition delay from engine cylinder pressure measurements, creating difficulties in cross-study comparison. In this study, several engine ignition delay calculation methods are evaluated for robustness in deriving ignition delay on both a cycle-averaged and cycle-to-cycle basis. Eight biofuel blends with varying ICN, oxygen concentration and other fuel properties were used to study the different methods. This yields a thorough analysis of how certain biofuel blends affect ignition delay and the entire MCCI process, as well as a thorough evaluation of the differences between the ID calculation methods. Many of these methods are equally valid, but the choice of method has a significant impact on the resulting ID, which must be carefully considered when evaluating results across multiple studies.

47 OTHER INSTRUMENTATION↗

A Simple Comparison of Biochemical Systems Theory and Metabolic Control Analysis

This paper explores some basic concepts of Biochemical Systems Theory (BST) and Metabolic Control Analysis (MCA), two frameworks developed to understand the behavior of biochemical networks. Initially introduced by Savageau, BST focuses on system stability and employs power laws in modeling biochemical systems. On the other hand, MCA, pioneered by authors such as Kacser and Burns and Heinrich and Rapoport, emphasizes linearization of the governing equations and describes relationships (known as theorems) between different measures. Despite apparent differences, both frameworks are shown to be equivalent in many respects. Through a simple example of a linear chain, the paper demonstrates how BST and MCA yield identical results when analyzing steady-state behavior and logarithmic gains within biochemical pathways. This comparative analysis highlights the interchangeability of concepts such as kinetic orders, elasticities and other logarithmic gains.

FOS: Biological sciences↗

sympl (v. 0.4.0) and climt (v. 0.15.3) – towards a flexible framework for building model hierarchies in Python

sympl (System for Modelling Planets) andclimt (Climate Modelling and Diagnostics Toolkit) are anattempt to rethink climate modelling frameworks from the ground up. The aimis to use expressive data structures available in the scientific Pythonecosystem along with best practices in software design to allow scientists toeasily and reliably combine model components to represent the climate systemat a desired level of complexity and to enable users to fully understandwhat the model is doing. sympl is a framework which formulates the model in terms of astate that gets evolved forward in time or modified within a specifictime by well-defined components. sympl's design facilitates buildingmodels that are self-documenting, are highly interoperable, and providefine-grained control over model components and behaviour. symplcomponents contain all relevant information about the input they expect andoutput that they provide. Components are designed to be easily interchanged,even when they rely on different units or array configurations.sympl provides basic functions and objects which could be used inany type of Earth system model. climt is an Earth system modelling toolkit that contains scientificcomponents built using sympl base objects. These include both purePython components and wrapped Fortran libraries. climt providesfunctionality requiring model-specific assumptions, such as stateinitialization and grid configuration. climt's programming interfacedesigned to be easy to use and thus appealing to a wide audience. Model building, configuration and execution are performed through a Pythonscript (or Jupyter Notebook), enabling researchers to build an end-to-endPython-based pipeline along with popular Python data analysis andvisualization tools.

97 MATHEMATICS AND COMPUTING↗

rustpix

rustpix is a high-performance, open-source Rust library with first-class Python bindings (via PyO3) for processing pixel-detector data in neutron imaging. It targets time-stamping detectors such as Timepix3 (TPX3) at ORNL's Spallation Neutron Source (VENUS beamline), where each detected neutron deposits charge across a cluster of pixels within a very high-rate event stream (96M+ hits/sec). rustpix parses TPX3 event data in parallel using memory-mapped I/O, offers four interchangeable clustering algorithms (ABS adjacency-based search, DBSCAN, graph/union-find connected components, and a parallel grid method), and extracts weighted, super-resolved centroids to produce neutron-event lists. A streaming architecture lets it process files larger than available memory. rustpix is distributed as a pip-installable Python package (with NumPy integration), Rust crates, a command-line tool, and an interactive GUI; it writes HDF5, Apache Arrow, and CSV; and it is designed to extend to TPX4 and other detector types. Released as open-source under the MIT License.

Zhang, Chen [Oak Ridge National Laboratory (ORNL),↗

A Global Hydrologic Framework to Accelerate Scientific Discovery

With the ability to simulate historical and future global water availability on a monthly time step at a spatial resolution of 0.5 geographic degree, the Python package Xanthos version 1 provided a solid foundation for continuing advancements in global water dynamics science. The goal of Xanthos version 2 was to build upon previous investments by creating a Python framework where core components of the model (potential evapotranspiration (PET), runoff generation, and river routing) could be interchanged or extended without having to start from scratch. Xanthos 2 utilizes a component-style architecture which enables researchers to quickly incorporate and test cutting-edge research in a stable modeling environment prebuilt with diagnostics. Major advancements for Xanthos 2 were also achieved by the creation of a robust default configuration with a calibration module, hydropower modules, and new PET modules, which are now available to the scientific community.

GCAM, Xanthos, global hydrology, modeling↗

The Neurodata Without Borders ecosystem for neurophysiological data science

The neurophysiology of cells and tissues are monitored electrophysiologically and optically in diverse experiments and species, ranging from flies to humans. Understanding the brain requires integration of data across this diversity, and thus these data must be findable, accessible, interoperable, and reusable (FAIR). This requires a standard language for data and metadata that can coevolve with neuroscience. We describe design and implementation principles for a language for neurophysiology data. Our open-source software (Neurodata Without Borders, NWB) defines and modularizes the interdependent, yet separable, components of a data language. We demonstrate NWB’s impact through unified description of neurophysiology data across diverse modalities and species. NWB exists in an ecosystem, which includes data management, analysis, visualization, and archive tools. Thus, the NWB data language enables reproduction, interchange, and reuse of diverse neurophysiology data. More broadly, the design principles of NWB are generally applicable to enhance discovery across biology through data FAIRness.

59 BASIC BIOLOGICAL SCIENCES↗