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DOE OSTI2018

Outer Wall Segmentation of Abdominal Aortic Aneurysm by Variable Neighborhood Search Through Intensity and Gradient Spaces

Aortic aneurysm segmentation remains a challenge. Manual segmentation is a time-consuming process which is not practical for routine use. To address this limitation, several automated segmentation techniques for aortic aneurysm have been developed, such as edge detection-based methods, partial differential equation methods, and graph partitioning methods. However, automatic segmentation of aortic aneurysm is difficult due to high pixel similarity to adjacent tissue and a lack of color information in the medical image, preventing previous work from being applicable to difficult cases. This paper uses uses a variable neighborhood search that alternates between intensity-based and gradient-based segmentation techniques. By alternating between intensity and gradient spaces, the search can escape from local optima of each space. The experimental results demonstrate that the proposed method outperforms the other existing segmentation methods in the literature, based on measurements of dice similarity coefficient and jaccard similarity coefficient at the pixel level. In addition, it is shown to perform well for cases that are difficult to segment.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

DOE OSTI2023

CrossLink: General Overview [Slides]

Problem: Traditional mesh generation approaches are labor intensive and have limited robustness when applied to parametric design exploration and optimization of complex geometries. While automatic mesh generation approaches exist, they tend to generate tetrahedral or mixed-hybrid meshes which are generally unsuitable for physics applications with strong shock waves, thin boundary layers, and strong gradients. In addition, simulations sizes in the billions of cells are becoming more common with traditional mesh generation methods quickly reaching scalability limits. Solution: CrossLink offers a topology-based mesh generation approach with unstructured block-filling methods and a scalable mesh generation engine. In addition, CrossLink incorporates a python-based API for seamless workflow integration and robust repeatability of the geometry handling and mesh generation process. This makes it ideal for parametric design study and optimization of complex geometries. Finally, future versions of CrossLink will offer a parametric mesh capability that optimizes a high-order mesh and enables reconstruction of the final mesh in memory by the physics solver.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2023

CrossLink: Advancements in Scalable Unstructured Mesh Generation [Slides]

Traditional mesh generation approaches are labor intensive and have limited robustness when applied to parametric design exploration and optimization of complex geometries. While automatic mesh generation approaches exist, they tend to generate tetrahedral or mixed-hybrid meshes which are generally unsuitable for physics applications with strong shock waves, thin boundary layers, and strong gradients. In addition, simulations sizes in the billions of cells are becoming more common with traditional mesh generation methods quickly reaching scalability limits. CrossLink offers a topology-based mesh generation approach with unstructured block-filling methods and a scalable mesh generation engine. In addition, CrossLink incorporates a python based API for seamless workflow integration and robust repeatability of the geometry handling and mesh generation process. This makes it ideal for parametric design study and optimization of complex geometries. Finally, future versions of CrossLink will offer a parametric mesh capability that optimizes a high-order mesh and enables reconstruction of the final mesh in memory by the physics solver.

97 MATHEMATICS AND COMPUTING↗

NASA NTRS1999

Evolution of Local Microstructures (ELMS): Spatial Instabilities of Coarsening

Glicksman, Martin E.↗

NASA NTRS1999

Evolution of Local Microstructures: Spatial Instabilities of Coarsening Clusters

This work examines the diffusional growth of discrete phase particles dispersed within a matrix. Engineering materials are microstructurally heterogeneous, and the details of the microstructure determine how well that material performs in a given application. Critical to the development of designing multiphase microstructures with long-term stability is the process of Ostwald ripening. Ripening, or phase coarsening, is a diffusion-limited process which arises in polydisperse multiphase materials. Growth and dissolution occur because fluxes of solute, driven by chemical potential gradients at the interfaces of the dispersed phase material, depend on particle size. The kinetics of these processes are "competitive," dictating that larger particles grow at the expense of smaller ones, overall leading to an increase of the average particle size. The classical treatment of phase coarsening was done by Todes, Lifshitz, and Slyozov, (TLS) in the limit of zero volume fraction, V(sub v), of the dispersed phase. Since the publication of TLS theory there have been numerous investigations, many of which sought to describe the kinetic scaling behavior over a 0 range of volume fractions. Some studies in the literature report that the relative increase in coarsening rate at low (but not zero) volume fractions compared to that predicted by TLS is proportional to v(sub v)(exp 1/2), whereas others suggcest V(sub v)(exp 1/3). This issue has been resolved recently by simulation studies at low volume fractions in three dimensions by members of the Rensselaer/MSFC team. Our studies of ripening behavior using large-scale numerical simulations suggest that although there are different circumstances which can lead to either scaling law, the most important length scale at low volume fractions is the diffusional analog of the Debye screening length. The numerical simulations we employed exploit the use of a recently developed "snapshot" technique, and identifies the nature of the coarsening dynamics at various volume fractions. Preliminary results of numerical and experimental investigations, focused on the growth of finite particle clusters, provide important insight into the nature of the transition between the two scaling regimes. The companion microgravity experiment centers on the growth within finite particle clusters, and follows the temporal dynamics driving microstructural evolution, using holography.

Frazier, Donald O.↗

DOE OSTI2017

Quasi parton distributions and the gradient flow

We propose a new approach to determining quasi parton distribution functions (PDFs) from lattice quantum chromodynamics. By incorporating the gradient flow, this method guarantees that the lattice quasi PDFs are finite in the continuum limit and evades the thorny, and as yet unresolved, issue of the renormalization of quasi PDFs on the lattice. In the limit that the flow time is much smaller than the length scale set by the nucleon momentum, the moments of the smeared quasi PDF are proportional to those of the lightfront PDF. Finally, we use this relation to derive evolution equations for the matching kernel that relates the smeared quasi PDF and the light-front PDF.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2026

Ion Transport and Crystal Rotation in Plastic Crystal Electrolytes Under Applied Electric Fields

Organic ionic plastic crystal electrolytes, containing a plastic crystal and lithium salt, offer a potential balance between mechanical and electrochemical properties for solid state lithium-ion battery electrolytes. These electrolytes contain multiple mobile ionic species (three or four), resulting in complex transport mechanisms which have not yet been established. Plastic crystals are defined by long-range positional order and short-range rotational disorder. It is therefore necessary to quantify changes in the local crystal structure of the electrolyte as current flows through it. Herein, we examine the electrochemical properties of pyrrolidinium-based plastic crystal electrolytes containing lithium salt and zwitterion additives, including measurements of current fraction and limiting current. We obtain species-specific insight into electrolyte transport using pulsed-field gradient nuclear magnetic resonance spectroscopy and find that, while the zwitterion additive increases ionic conductivity, it decreases lithium diffusivity with respect to other ionic components. With operando spatiotemporally resolved wide-angle X-ray scattering we observe location-specific crystal rotations due to the passage of ionic current. In conclusion, we posit that reducing energy dissipation due to rotation is essential for using plastic crystal electrolytes in practical applications.

Yap, Kyra M. K. [University of California, Berkele↗

DOE OSTI2020

Efficient Treatment of Large Active Spaces through Multi-GPU Parallel Implementation of Direct Configuration Interaction

In this study, we have extended our graphical processing unit (GPU)-accelerated direct configuration interaction program to multiple devices, reducing iteration times for configuration spaces of 165 million determinants to only 3 s using NVIDIA P100 GPUs. Similar improvements in the one- and two-particle reduced density matrix formation allow for fast analytical energy gradients and electronic properties. Our parallel algorithm enables the calculation of arbitrarily large configuration spaces (limited only by available system memory), with iteration times of 13 min for an active space of 18 electrons in 18 orbitals (2.4 billion determinants) using six consumer grade NVIDIA 1080Ti GPUs. These advances enable routine molecular dynamics simulations, geometry optimizations, and absorption spectrum calculations for molecules with large configuration spaces, a task that has heretofore required massive computational effort. In this work, we demonstrate the utility of our program by generating the absorption spectrum for diphenyl acetylene at the floating occupation molecular orbital complete active space configuration interaction level of theory. Lastly, several active spaces were investigated to assess the dependence of spectral features on orbital space dimension.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2025

Machine learning of 27Al NMR electric field gradient tensors for crystalline structures from DFT

NMR crystallography has emerged as a promising technique for the determination and refinement of atomic coordinates in crystal structures. The crystal structure of compounds containing quadrupolar nuclei, such as 27Al, can be improved by directly comparing solid-state NMR measurements to DFT computations of the electric field gradient (EFG) tensor. The non-negligible computational cost of these first-principles calculations limits the applicability of this method to all but the most well-defined structures. We developed a fast, low-cost machine learning model to predict EFG parameters based on local structural motifs and elemental parameters. We computed 8081 EFG tensors from 1681 27Al crystalline solids using DFT and benchmarked them against 105 experimentally measured 27Al sites. Surprisingly, simple local geometric features dominate the predictive performance of the resulting random-forest model, yielding an R2 value of 0.98 and an RMSE of 0.61 MHz for CQ, the quadrupolar coupling constant. This model accuracy should enable pre-refining future structural assignments before finally validating with first-principles calculations. Such a catalogue of 27Al NMR tensors can serve as a tool for researchers assigning complex NMR spectra influenced by the nuclear electric quadrupole interaction.

Sun, He↗

DOE OSTI2014

Thermodynamic stability of nanosized multicomponent bubbles/droplets: The square gradient theory and the capillary approach

Formation of nanosized droplets/bubbles from a metastable bulk phase is connected to many unresolved scientific questions. We analyze the properties and stability of multicomponent droplets and bubbles in the canonical ensemble, and compare with single-component systems. The bubbles/droplets are described on the mesoscopic level by square gradient theory. Furthermore, we compare the results to a capillary model which gives a macroscopic description. Remarkably, the solutions of the square gradient model, representing bubbles and droplets, are accurately reproduced by the capillary model except in the vicinity of the spinodals. The solutions of the square gradient model form closed loops, which shows the inherent symmetry and connected nature of bubbles and droplets. A thermodynamic stability analysis is carried out, where the second variation of the square gradient description is compared to the eigenvalues of the Hessian matrix in the capillary description. The analysis shows that it is impossible to stabilize arbitrarily small bubbles or droplets in closed systems and gives insight into metastable regions close to the minimum bubble/droplet radii. Despite the large difference in complexity, the square gradient and the capillary model predict the same finite threshold sizes and very similar stability limits for bubbles and droplets, both for single-component and two-component systems.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2025

Codon bias, nucleotide selection, and genome size predict in situ bacterial growth rate and transcription in rewetted soil

In soils, the first rain after a prolonged dry period represents a major pulse event impacting soil microbial community function, yet we lack a full understanding of the genomic traits associated with the microbial response to rewetting. Genomic traits such as codon usage bias and genome size have been linked to bacterial growth in soils—however, often through measurements in culture. Here, we used metagenome-assembled genomes (MAGs) with 18 O-water stable isotope probing and metatranscriptomics to track genomic traits associated with growth and transcription of soil microorganisms over one week following rewetting of a grassland soil. We found that codon bias in ribosomal protein genes was the strongest predictor of growth rate. We also found higher growth rates in bacteria with smaller genomes, suggesting that reduced genome size enables a faster response to pulses in soil bacteria. Faster transcriptional upregulation of ribosomal protein genes was associated with high codon bias and increased nucleotide skew. We found that several of these relationships existed within phyla, indicating that these associations between genomic traits and activity could be generalized characteristics of soil bacteria. Finally, we used publicly available metagenomes to assess the distribution of codon bias across a pH gradient and found that microbial communities in higher pH soils—which are often more water limited and pulse driven—have higher codon usage bias in their ribosomal protein genes. Together, these results provide evidence that genomic characteristics affect soil microbial activity during rewetting and pose a potential fitness advantage for soil bacteria where water and nutrient availability are episodic.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2023

Optimal Power Flow With State Estimation in the Loop for Distribution Networks

Here in this article, we propose a framework for running optimal control-estimation synthesis in distribution networks. Our approach combines a primal-dual gradient-based optimal power flow solver with a state estimation feedback loop based on a limited set of sensors for system monitoring, instead of assuming exact knowledge of all states. The estimation algorithm reduces uncertainty on unmeasured grid states based on certain online state measurements and noisy "pseudomeasurements." We analyze the convergence of the proposed algorithm and quantify the statistical estimation errors based on a weighted least-squares estimator. The numerical results on a 4521-node network demonstrate that this approach can scale to extremely large networks and provide robustness to both large pseudomeasurement variability and inherent sensor measurement noise.

24 POWER TRANSMISSION AND DISTRIBUTION↗

DOE OSTI2024

Curves, Coriolis, and Cross-Channel Circulation in the Hudson River Estuary

Abstract Despite its relatively small magnitude, cross-channel circulation in estuaries can influence the along-channel momentum balance, dispersion, and transport. We investigate spatial and temporal variation in cross-channel circulation at two contrasting sites in the Hudson River estuary. The two sites differ in the relative strength and direction of Coriolis and curvature forcing. We contrast the patterns and magnitudes of flow at the two sites during varying conditions in stratification driven by tidal amplitude and river discharge. We found well-defined flows during flood tides at both sites, characterized by mainly two-layer structures when the water column was more homogeneous and structures with three or more layers when the water column was more stratified. Ebb tides had generally weaker and less definite flows, except at one site where curvature and Coriolis reinforced each other during spring tide ebbs. Cross-channel currents had similar patterns, but were oppositely directed at the two sites, demonstrating the importance of curvature even in channels with relatively gradual curves. Coriolis and curvature dominated the measured terms in the cross-channel momentum balance. Their combination was generally consistent with driving the observed patterns and directions of flow, but local acceleration and cross-channel advection made some notable contributions. A large residual in the momentum balance indicates that some combination of vertical stress divergence, baroclinic pressure gradients, and along-channel and vertical advection must play an essential role, but data limitations prevented an accurate estimation of these terms. Cross-channel advection affected the along-channel momentum balance at times, with implications for the exchange flow’s strength. Significance Statement Currents that flow across the channel in an estuary move slower than those flowing along the channel, but they can transport materials and change water properties in important ways, affecting human uses of estuaries such as shipping, aquaculture, and recreation. We wanted to better understand cross-channel currents in the Hudson River estuary. We found that larger tides produced the strongest cross-channel currents with a two-layer pattern, compared to weaker currents with three layers during smaller tides. Higher or lower river flow also affected current strength. Comparing two locations, we saw cross-channel currents moving in opposite directions because of differences in the curvature of the river channel. Our results show how channel curvature and Earth’s rotation combine to produce cross-channel currents.

Conley, Margaret M.↗

DOE OSTI2022

Evaluation of Single-Cell Cavities Made of Forged Ingot Niobium at Jefferson Lab

Currently, fine grain niobium (Nb) (grain size ~ 50 um) and large grain Nb (grain size of a few cm) are being used for the fabrication of superconducting radio frequency (SRF) cavities. Medium grain forged ingot with grain size of a few hundred um may be beneficial for cost-effectiveness as well as providing better performance for future SRF-based accelerators. Forged ingot Nb with medium grain size is a novel production method to obtain Nb discs used for the fabrication of superconducting radio frequency cavities. We have fabricated two 1.5 GHz single cell cavities made from forged Nb ingot with a residual resistivity ratio of ~100. The cavities were chemically and mechanically polished and heat-treated in the temperature range of 650-1000 C before the rf test. One of the cavities reached an accelerating gradient of 34 MV/m with a quality factor Q > 1e10, while the second cavity was limited at 14 MV/m, likely due to a weld defect at the equator.

Dhakal, P.↗

DOE OSTI2015

Numerical Study of Velocity Shear Stabilization of 3D and Theoretical Considerations for Centrifugally Confined Plasmas and Other Interchange-Limited Fusion Concepts

We studied the feasibility of resonantly driving GAMs in tokamaks. A numerical simulation was carried out and showed the essential features and limitations. It was shown further that GAMs can damp by phase-mixing, from temperature gradients, or nonlinear detuning, thus broadening the resonance. Experimental implications of this were quantified. Theoretical support was provided for the Maryland Centrifugal Experiment, funded in a separate grant by DOE. Plasma diamagnetism from supersonic rotation was established. A theoretical model was built to match the data. Additional support to the experiment in terms of numerical simulation of the interchange turbulence was provided. Spectra from residual turbulence on account of velocity shear suppression were obtained and compared favorably to experiment. A new drift wave, driven solely by the thermal force, was identified.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2017

Testing Fast Reactor Fuels in a Thermal Reactor: A Comparison Report

The testing of fast reactor fuels in the thermal-spectrum of the Advanced Test Reactor using cadmium-filtering has been underway since 2003. The objective of this experimental approach to create a temperature profile inside of test fuel rodlets that is nearly prototypic of corresponding fast reactor conditions. This requires, necessarily, that the power generation profile inside of test fuel rodlets also be nearly prototypic of corresponding fast reactor conditions. By doing so, this experimental approach should allow for the study of fast reactor fuel performance phenomena that are primarily dependent upon the conditions of temperature and/or temperature gradient inside the fuel to be possible using a thermal test reactor. Validation of this assertion has been undertaken by both supporting analyses and by comparing fuel performance phenomena observed in fuels irradiated in cadmium-filtered positions in ATR to similar or identical fuels irradiated under similar conditions in genuine fast reactors. This report documents a preliminary comparison of fuel performance data available from the testing of metallic, oxide, and nitride fuels in cadmium-filtered positions in the ATR to the performance of identical or similar fuels irradiated in genuine fast reactors. Although a variety of fuel performance metrics are presented, particular attention is paid to those phenomena that are primarily, or significantly, dependent on conditions of temperature and temperature gradient with the fuel. Although the comparisons presented in this report are at this time limited in scope and preliminary in nature, they do support the assertion that the objectives of the cadmium-filtered testing approach in ATR are both feasible and appear sound. The analyses and comparisons presented in this report show that ATR irradiations performed using cadmium shrouding are sufficiently prototypic that they can be used with confidence in the development and testing of fast reactor fuels.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

DOE OSTI2019

Mass Calibration of Optically Selected DES Clusters Using a Measurement of CMB-cluster Lensing with SPTpol Data

We use cosmic microwave background (CMB) temperature maps from the 500 deg$^{2}$ SPTpol survey to measure the stacked lensing convergence of galaxy clusters from the Dark Energy Survey (DES) Year-3 redMaPPer (RM) cluster catalog. The lensing signal is extracted through a modified quadratic estimator designed to be unbiased by the thermal Sunyaev-Zel{'}dovich (tSZ) effect. The modified estimator uses a tSZ-free map, constructed from the SPTpol 95 and 150 GHz datasets, to estimate the background CMB gradient. For lensing reconstruction, we employ two versions of the RM catalog: a flux-limited sample containing 4003 clusters and a volume-limited sample with 1741 clusters. We detect lensing at a significance of 8.7$\sigma$(6.7$\sigma$) with the flux(volume)-limited sample. By modeling the reconstructed convergence using the Navarro-Frenk-White profile, we find the average lensing masses to be $M_{200m}$ = ($1.62^{+0.32}_{-0.25}$ [stat.] $\pm$ 0.04 [sys.]) and ($1.28^{+0.14}_{-0.18}$ [stat.] $\pm$ 0.03 [sys.]) $\times\ 10^{14}\ M_{\odot}$ for the volume- and flux-limited samples respectively. The systematic error budget is much smaller than the statistical uncertainty and is dominated by the uncertainties in the RM cluster centroids. We use the volume-limited sample to calibrate the normalization of the mass-richness scaling relation, and find a result consistent with the galaxy weak-lensing measurements from DES.

79 ASTRONOMY AND ASTROPHYSICS↗

NASA NTRS1978

Shear rupture of a directionally solidified eutectic gamma/gamma prime - alpha (Mo) alloy

Directionally solidified Mo alloys are evaluated to determine the shear rupture strength and to possibly improve it by microstructural and heat treatment variations. Bars of the alloy containing nominally 5.7% Al and 33.5% Mo by weight with balance Ni were directionally solidified at rates between 10 and 100 mm per hour in furnaces with thermal gradients at the liquid-solid interface of 250 or 100 C per cm. A limited number of longitudinal shear rupture tests were conducted at 760 C and 207 MPa in the as - solidified and in several heat treated conditions. It is shown that shear rupture failures are partly transgranular and that resistance to failure is prompted by good fiber alignment and a matrix structure consisting mainly of gamma prime. Well aligned as - solidified specimens sustained the shear stress for an average of 81 hours. A simulated coating heat treatment appeared to increase the transformation of gamma to gamma prime and raised the average shear life of aligned specimens to 111 hours. However, heat treatments at 1245 C and especially at 1190 C appeared to be detrimental by causing partial solutioning of the gamma prime, and reducing lives to 47 and 10 hours, respectively.

Harf, F. H.↗