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At least 649 records · Page 36

MO-DE-207A-11: Sparse-View CT Reconstruction Via a Novel Non-Local Means Method

Purpose: Sparse-view computed tomography (CT) reconstruction is an effective strategy to reduce the radiation dose delivered to patients. Due to its insufficiency of measurements, traditional non-local means (NLM) based reconstruction methods often lead to over-smoothness in image edges. To address this problem, an adaptive NLM reconstruction method based on rotational invariance (RIANLM) is proposed. Methods: The method consists of four steps: 1) Initializing parameters; 2) Algebraic reconstruction technique (ART) reconstruction using raw projection data; 3) Positivity constraint of the image reconstructed by ART; 4) Update reconstructed image by using RIANLM filtering. In RIANLM, a novel similarity metric that is rotational invariance is proposed and used to calculate the distance between two patches. In this way, any patch with similar structure but different orientation to the reference patch would win a relatively large weight to avoid over-smoothed image. Moreover, the parameter h in RIANLM which controls the decay of the weights is adaptive to avoid over-smoothness, while it in NLM is not adaptive during the whole reconstruction process. The proposed method is named as ART-RIANLM and validated on Shepp-Logan phantom and clinical projection data. Results: In our experiments, the searching neighborhood size is set to 15 by 15 and the similarity window is set to 3 by 3. For the simulated case with a resolution of 256 by 256 Shepp-Logan phantom, the ART-RIANLM produces higher SNR (35.38dB<24.00dB) and lower MAE (0.0006<0.0023) reconstructed image than ART-NLM. The visual inspection demonstrated that the proposed method could suppress artifacts or noises more effectively and preserve image edges better. Similar results were found for clinical data case. Conclusion: A novel ART-RIANLM method for sparse-view CT reconstruction is presented with superior image. Compared to the conventional ART-NLM method, the SNR and MAE from ART-RIANLM increases 47% and decreases 74%, respectively.

60 APPLIED LIFE SCIENCES↗

Energy relaxation in a quantum dot at the edge of a two-dimensional topological insulator

The calculation of energy relaxation rates due to transitions involving phonons is performed for quantum dots of varying size which are formed by magnetic barriers at the edge of a two-dimensional topological insulator based on a HgTe/CdTe quantum well. Relaxation both into the discrete and continuous spectrum of edge states is considered, as well as into the continuous spectrum of the bulk material. The obtained results demonstrate the existence of a region of system parameters which provide relatively slow energy relaxation, indicating that the considered objects are promising, e.g., for the design of novel types of solid state qubits.

36 MATERIALS SCIENCE↗

Evaluating Mineral Lattices as Evolutionary Proxies for Metalloprotein Evolution

Protein coordinated iron-sulfur clusters drive electron flow within metabolic pathways for organisms throughout the tree of life. It is not known how iron-sulfur clusters were first incorporated into proteins. Structural analogies to iron-sulfde minerals present on early Earth, suggest a connection in the evolution of both proteins and minerals. The availability of large protein and mineral crystallographic structure data sets, provides an opportunity to explore co-evolution of proteins and minerals on a large-scale using informatics approaches. However, quantitative comparisons are confounded by the infnite, repeating nature of the mineral lattice, in contrast to metal clusters in proteins, which are fnite in size. We address this problem using the Niggli reduction to transform a mineral lattice to a fnite, unique structure that when translated reproduces the crystal lattice. Protein and reduced mineral structures were represented as quotient graphs with the edges and nodes corresponding to bonds and atoms, respectively. We developed a graph theory-based method to calculate the maximum common connected edge subgraph (MCCES) between mineral and protein quotient graphs. MCCES can accommodate differences in structural volumes and easily allows additional chemical criteria to be considered when calculating similarity. To account for graph size differences, we use the Tversky similarity index. Using consistent criteria, we found little similarity between putative ancient iron-sulfur protein clusters and iron-sulfur mineral lattices, suggesting these metal sites are not as evolutionarily connected as once thought. We discuss possible evolutionary implications of these findings in addition to suggesting an alternative proxy, mineral surfaces, for better understanding the coevolution of the geosphere and biosphere

Kenneth N. McGuinness↗

Explaining Missing Data in Graphs: A Constraint-based Approach

Abstract: This paper introduces a constraint-based approach to clarify missing values in graphs. Our method capitalizes on a set S of graph data constraints. An explanation is a sequence of operational enforcement of S towards the recovery of interested yet missing data (e.g., attribute values, edges). We show that constraint-based approach helps us to understand not only why a value is missing, but also how to recover the missing value. We study S-explanation problem, which is to compute the optimal explanations with guarantees on the informativeness and conciseness. We show the problem is in ?P^2 for established graph data constraints such as graph keys and graph association rules. We develop an efficient bidirectional algorithm to compute optimal explanations, without enforcing S on the entire graph. We also show our algorithm can be easily extended to support graph refinement within limited time, and to explain missing answers. Using real-world graphs, we experimentally verify the effectiveness and efficiency of our algorithms.

Data Analytics↗

Generating Billion-Edge Scale-Free Networks in Seconds: Performance Study of a Novel GPU-based Preferential Attachment Model

A novel parallel algorithm is presented for generating random scale-free networks using the preferential-attachment model. The algorithm, named cuPPA, is custom-designed for single instruction multiple data (SIMD) style of parallel processing supported by modern processors such as graphical processing units (GPUs). To the best of our knowledge, our algorithm is the first to exploit GPUs, and also the fastest implementation available today, to generate scale free networks using the preferential attachment model. A detailed performance study is presented to understand the scalability and runtime characteristics of the cuPPA algorithm. In one of the best cases, when executed on an NVidia GeForce 1080 GPU, cuPPA generates a scale free network of a billion edges in less than 2 seconds.

97 MATHEMATICS AND COMPUTING↗

Implementation of a Doppler-Free Saturation Spectroscopy (DFSS) Diagnostic for Helicon Wave Electric Field Vector Measurement in Edge Plasma in DIII-D

A laser-based technique known as Doppler-free saturation spectroscopy (DFSS) has been designed, fabricated, and installed on the DIII-D National Fusion Facility to measure the helicon wave electric field vector in the edge plasma. These experimental measurements quantify phenomena resulting in decreased current drive efficiency due to wave/edge plasma interactions. This implementation of DFSS on DIII-D is the first of its kind on a tokamak and thus presents unique engineering challenges, including integration of the system onto an existing multidiagnostic port flange without impacts to system serviceability, as well as maintaining precise laser alignment over a 2-m distance during disruptions and thermal drift of the vessel. Further, these challenges were resolved using innovative design approaches such as a novel decoupled shutter system to facilitate serviceability of the in-vessel mirror assemblies without the need for personnel vessel entry, as well as an ex-vessel piezo-mirror-based optical system for laser beam shaping and real-time steering of the measurement location. The solutions to these engineering challenges were demonstrated during the successful installation and operation of these diagnostic components during the 2022 DIII-D vent and subsequent experimental campaign.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Database of ab initio L-edge X-ray absorption near edge structure

Abstract The L-edge X-ray Absorption Near Edge Structure (XANES) is widely used in the characterization of transition metal compounds. Here, we report the development of a database of computed L-edge XANES using the multiple scattering theory-based FEFF9 code. The initial release of the database contains more than 140,000 L-edge spectra for more than 22,000 structures generated using a high-throughput computational workflow. The data is disseminated through the Materials Project and addresses a critical need for L-edge XANES spectra among the research community.

42 ENGINEERING↗

Magnetic multilayer edges in Bernal-stacked hexagonal boron nitride

Single-layer h-BN is known to have edges with unique magnetism; however, in the commonly fabricated multilayer AA'-h-BN, edge relaxations occur that create interlayer bonds and eliminate the unpaired electrons at the edge. Recently, a robust method of growing the unconventional Bernal-stacked h-BN (AB-h-BN) has been reported. Here, we use theoretical approaches to investigate the nitrogen-terminated zigzag edges in AB-h-BN that can be formed in a controlled fashion using a high-energy electron beam. We find that these "open"edges remain intact in bilayer and multilayer AB-h-BN, enabling researchers potentially to investigate these edge states experimentally. We also investigate the thermodynamics of the spin configurations at the edge by constructing a lattice model that is based on parameters extracted from a set of first-principles calculations. We find that the edge spins in neighboring layers interact very weakly, resulting in a sequence of independent spin chains in multilayer samples. By solving this model using Monte Carlo simulations, we can determine nm-scale correlation lengths at liquid-N 2 temperatures and lower. At low temperatures, these edges may be utilized in magnetoresistance and spintronics applications.

1-dimensional spin chains↗

Integrating fine root diameter and watershed mapping to characterize rhizosphere hydrology

Root morphology and soil hydraulic characteristics were integrated using watershed distance mapping to show water distribution and uptake across the plant-soil interface. Poplar (Populus deltoides, P. trichocarpa), maize (Zea mays), juniper (Juniperus virginiana), grape (Vitis rotundifolia) and maple (Acer saccharum) seedlings were grown in sand, after which root diameter and soil water dynamics were assessed via sequential neutron radiography. Three local soil regions (root-soil interface or edge, rhizosphere, bulk soil) were classified based on both radial distance from the root surface and diameter of the nearest root, from which changes in water content and distribution were characterized using digital image processing. Water content dynamics across the rhizosphere showed two different species-independent processes: a consistently elevated water content at the root-soil edge interface which increased with root diameter, and hysteresis as the rhizosphere transitioned to bulk soil (~0.5 cm from the root), independent of root diameter. Water uptake per unit root surface area declined exponentially with root diameter, independent of species. Results highlight the species-independent hydrologic characteristics of the rhizosphere and the potential for evaluating them in a local spatially connected soil context. Avenues for improved integration of soil and root characteristics are discussed.

59 BASIC BIOLOGICAL SCIENCES↗

Efficient Contingency Analysis in Power Systems via Network Trigger Nodes

Modeling failure dynamics within a power system is a complex and challenging process due to multiple inter-dependencies and convoluted inter-domain relationships. Subject matter experts (SMEs) are interested in understanding these failure dynamics for reducing the impact from future disasters (i.e., losses or failures of power system components, such as transmission lines). Contingency analysis (CA) tools enable such ’what-if’ scenario analyses to evaluate the impacts on the power system. Analyzing all possible contingencies among N system components can be computationally expensive. An important step for performing CA is identifying a set of k ‘trigger’ components, which when failed initially can significantly impact the overall system by causing multiple failures. Currently SMEs focus on identifying these trigger components by running expensive simulations on all possible subsets, which quickly becomes infeasible. Hence finding a relevant set of trigger components (contingencies) rapidly to enable efficient and useful CA is crucial.In a collaboration between computer scientists and power system experts, we propose an efficient method for performing CA by exploiting network inter-dependencies in power system components. First, we construct a network with multiple electric grid infrastructure components and dependencies as connections among them. We reformulate the problem of finding a set of trigger components as a problem of identifying critical nodes in the network, which can cascade power failures through connected nodes and cause significant damage to the network. To guide the practical CA tools, we develop a network-based model with a probabilistic edge-weights setup using intricate domain rules. Then we conduct an empirical study on real power system data in the US for both regional and national levels. Firstly, we use power system datasets for the US to create a national-scale domain-driven model. Secondly, we demonstrate that network-based model outperforms the outputs from a real CA tool and show on average 25 × improved selection of contingencies, thereby showcasing practical benefits to the power experts.

Tabassum, Anika↗

Effects of leading and trailing edge flaps on the aerodynamics of airfoil/vortex interactions

A numerical procedure based on the unsteady 2D full potential equation is presently used to simulate the effects of leading-edge and trailing-edge flaps on the aerodynamics of airfoil-vortex interactions. Attention is given to unsteady flap-motion effects, which alleviate those interactions at sub- and supercritical onset flows. For subcritical interactions, the results obtained indicate that trailing-edge flaps can be used to alleviate the impulsive loads experienced by the airfoil; for supercritical interactions, a leading- rather than trailing-edge flap must be used to alleviate the interaction.

Hassan, Ahmed A.↗

The Primordial Anisotropy Polarization Pathfinder Array (PAPPA): Instrument Overview and Status

PAPPA is a balloon-based experiment designed to measure the polarization of the Cosmic Microwave Background using candidate technology for an eventual Inflation Probe mission. It will survey a 20 x 20 degree patch of sky with 1 degree angular resolution covering 3 passbands centered at 100,200 and 300 GHz. Detection will be accomplished via antenna-coupled transition edge sensors (TESs) with SQUID-based readouts. In the eventual flight package, band defining filters and MEMS-based polarization modulators will be incorporated into the superconducting microstrip transmission lines that terminate in resistors that are thermally coupled to the TESs. The MEMS switches will allow on-chip polarization modulation that is faster than significant detector gain variations. The initial configuration will incorporate a simplified focal plane augmented by quasioptical polarization modulation. We describe the overall instrument design and present a summary of the current progress.

Chuss, David↗

Insight into the epitaxial growth of high optical quality GaAs{sub 1–x}Bi{sub x}

The ternary alloy GaAs{sub 1–x}Bi{sub x} is a potentially important material for infrared light emitting devices, but its use has been limited by poor optical quality. We report on the synthesis of GaAs{sub 1–x}Bi{sub x} epi-layers that exhibit narrow, band edge photoluminescence similar to other ternary GaAs based alloys, e.g., In{sub y}Ga{sub 1–y}As. The measured spectral linewidths are as low as 14 meV and 37 meV at low temperature (6 K) and room temperature, respectively, and are less than half of previously reported values. The improved optical quality is attributed to the use of incident UV irradiation of the epitaxial surface and the presence of a partial surface coverage of bismuth in a surfactant layer during epitaxy. Comparisons of samples grown under illuminated and dark conditions provide insight into possible surface processes that may be altered by the incident UV light. The improved optical quality now opens up possibilities for the practical use of GaAs{sub 1–x}Bi{sub x} in optoelectronic devices.

36 MATERIALS SCIENCE↗

A dataset of eco-evidence tools to inform early-stage environmental impact assessments of hydropower development

The datasets described herein provide the foundation for a decision support prototype (DSP) toolkit aimed at assisting stakeholders in determining evidence of which aspects of river ecosystems have been impacted by hydropower. The DSP toolkit and its application are presented and described in the article “Evidence-based indicator approach to guide preliminary environmental impact assessments of hydropower development” [1]. Development of the DSP and the output for decision support centralize around 42 river function indicators describing the dimensionality of river ecosystems through six main categories: biota and biodiversity, water quality, hydrology, geomorphology, land cover, and river connectivity. Three main tools are represented in the DSP: A science-based questionnaire (SBQ), an environmental envelope model (EEM), and a river function linkage assessment tool (RFLAT). The SBQ is a structured survey-style questionnaire whose objective is to provide evidence of which indicators have been impacted by hydropower. Based on a global literature review, 140 questions were developed from general hypotheses regarding the impacts of dams on rivers. The EEM is a model to predict the likelihood of hydropower impacting indicators based on a several variables. The intended use of the EEM is for situations of new hydropower development where results of the SBQ are incomplete or highly uncertain. The EEM was developed through the compilation of a dataset containing attributes of dams, reservoirs, and geospatial information on environmental concerns, which was combined with data on ecological indicators documented at those sites through literature review. The model operates through 247 “envelopes” and weighting factors, representing the individual effect of each variable on each indicator, all available through spreadsheets. Finally, the RFLAT is a tool to examine causal relationships amongst indicators. Inter-indicator relationships were hypothesized based on literature review and summarized into node and edge datasets to represent the structure of a graphical network. Bayes theorem was used estimate conditional probabilities of inter-indicator relationships based on the output of the SBQ. Nodes and edges were imported into R programming environment to visualize ecological indicator networks. The datasets can be expanded upon and enriched with more detailed questions for the SBQ, building upon the EEM with to develop more sophisticated models, and identifying new relationships for the RFALT. Additionally, once the tools are applied to numerous hydropower developments, the output of the tools (e.g. evidence of impacted indicators) becomes a very useful dataset for meta-analyses of hydropower impacts.

13 HYDRO ENERGY↗

AFC-Enabled Simplified High-Lift System Integration Study

The primary objective of this trade study report is to explore the potential of using Active Flow Control (AFC) for achieving lighter and mechanically simpler high-lift systems for transonic commercial transport aircraft. This assessment was conducted in four steps. First, based on the Common Research Model (CRM) outer mold line (OML) definition, two high-lift concepts were developed. One concept, representative of current production-type commercial transonic transports, features leading edge slats and slotted trailing edge flaps with Fowler motion. The other CRM-based design relies on drooped leading edges and simply hinged trailing edge flaps for high-lift generation. The relative high-lift performance of these two high-lift CRM variants is established using Computational Fluid Dynamics (CFD) solutions to the Reynolds-Averaged Navier-Stokes (RANS) equations for steady flow. These CFD assessments identify the high-lift performance that needs to be recovered through AFC to have the CRM variant with the lighter and mechanically simpler high-lift system match the performance of the conventional high-lift system. Conceptual design integration studies for the AFC-enhanced high-lift systems were conducted with a NASA Environmentally Responsible Aircraft (ERA) reference configuration, the so-called ERA-0003 concept. These design trades identify AFC performance targets that need to be met to produce economically feasible ERA-0003-like concepts with lighter and mechanically simpler high-lift designs that match the performance of conventional high-lift systems. Finally, technical challenges are identified associated with the application of AFC-enabled highlift systems to modern transonic commercial transports for future technology maturation efforts.

Hartwich, Peter M.↗

Wing extensions for improving climb performance

Recent wind tunnel studies have shown that significant improvements in wing efficiency and climb performance can be achieved using wing extensions having sharp edges and unmodified upper airfoil contours. Based on tests of six configurations, a simple tip shape provided the best wing efficiency at high lift conditions without penalty during cruise conditions. The best configuration tested exhibited more than 20 percent improvement in the maximum rate of climb, plus a reduction in stall speed and a slight improvement in cruise performance over a baseline tip with a round edge. In addition to measurements that were used to determine performance, flow visualization studies provided insight into reasons for improved wing efficiency. Tests were conducted using a high performance general aviation aircraft model with a tapered, cantilevered wing.

Nicks, O. W.↗

Microstructural Study of Hydration of C 3 S in the Presence of Calcium Nitrate Using Scanning Transmission X-Ray Microscopy (STXM)

Calcium nitrate (CN) is used widely as an effectively inorganic setting accelerator and antifreeze admixture in concrete structures. In this paper, the multiscale investigation of CN on the hydration of C 3 S was studied by scanning transmission X-ray microscopy (STXM) combined with near-edge X-ray absorption fine structure (NEXAFS), 29 Si MAS NMR, calorimetry, scanning electron microscope, and N 2 absorption. It was concluded that the calcium silicate hydrate (C-S-H) surrounds the unhydrated C 3 S at 1-day hydrated C 3 S in the presence of calcium nitrate, while portlandite is partly in transformation and is formed partly. Based on Ca L 3 , 2 -edge NEXAFS spectra for 1-day hydrated C 3 S particle, calcium nitrate does not change the structure of the asymmetrically 7-fold coordination of calcium in the C-S-H. Calcium nitrate can accelerate the hydration of C 3 S to some extent and polymerization of the silicate chains within C-S-H considerably at early age, resulting in the increasing specific surface area.

Li, Qinfei↗

Sustainability Trait Modeling of Field-Grown Switchgrass ( Panicum virgatum ) Using UAV-Based Imagery

Unmanned aerial vehicles (UAVs) provide an intermediate scale of spatial and spectral data collection that yields increased accuracy and consistency in data collection for morphological and physiological traits than satellites and expanded flexibility and high-throughput compared to ground-based data collection. In this study, we used UAV-based remote sensing for automated phenotyping of field-grown switchgrass (Panicum virgatum), a leading bioenergy feedstock. Using vegetation indices calculated from a UAV-based multispectral camera, statistical models were developed for rust disease caused by Puccinia novopanici, leaf chlorophyll, nitrogen, and lignin contents. For the first time, UAV remote sensing technology was used to explore the potentials for multiple traits associated with sustainable production of switchgrass, and one statistical model was developed for each individual trait based on the statistical correlation between vegetation indices and the corresponding trait. Also, for the first time, lignin content was estimated in switchgrass shoots via UAV-based multispectral image analysis and statistical analysis. The UAV-based models were verified by ground-truthing via correlation analysis between the traits measured manually on the ground-based with UAV-based data. The normalized difference red edge (NDRE) vegetation index outperformed the normalized difference vegetation index (NDVI) for rust disease and nitrogen content, while NDVI performed better than NDRE for chlorophyll and lignin content. Overall, linear models were sufficient for rust disease and chlorophyll analysis, but for nitrogen and lignin contents, nonlinear models achieved better results. As the first comprehensive study to model switchgrass sustainability traits from UAV-based remote sensing, these results suggest that this methodology can be utilized for switchgrass high-throughput phenotyping in the field.

60 APPLIED LIFE SCIENCES↗