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At least 649 records · Page 36

A Review of Bayesian Networks for Spatial Data

We report Bayesian networks are a popular class of multivariate probabilistic models as they allow for the translation of prior beliefs about conditional dependencies between variables to be easily encoded into their model structure. Due to their widespread usage, they are often applied to spatial data for inferring properties of the systems under study and also generating predictions for how these systems may behave in the future. We review published research on methodologies for representing spatial data with Bayesian networks and also summarize the application areas for which Bayesian networks are employed in the modeling of spatial data. We find that a wide variety of perspectives are taken, including a GIS-centric focus on efficiently generating geospatial predictions, a statistical focus on rigorously constructing graphical models controlling for spatial correlation, as well as a range of problem-specific heuristics for mitigating the effects of spatial correlation and dependency arising in spatial data analysis. Special attention is also paid to potential future directions for integration of Bayesian networks with spatial processes.

97 MATHEMATICS AND COMPUTING↗

Tail Dependence as a Measure of Teleconnected Warm and Cold Extremes of North American Wintertime Temperatures

Current models for spatial extremes are concerned with the joint upper (or lower) tail of the distribution at two or more locations. Such models cannot account for teleconnection patterns of 2-m surface air temperature ( T 2m ) in North America, where very low temperatures in the contiguous United States may coincide with very high temperatures in Alaska in the wintertime. This dependence between warm and cold extremes motivates the need for a model with opposite-tail dependence in spatial extremes. This work develops a statistical modeling framework that has flexible behavior in all four pairings of high and low extremes at pairs of locations. In particular, we use a mixture of rotations of common Archimedean copulas to capture various combinations of four-corner tail dependence. We study teleconnected T 2m extremes using ERA5 of daily average 2-m temperature during the boreal winter. Further, the estimated mixture model quantifies the strength of opposite-tail dependence between warm temperatures in Alaska and cold temperatures in the midlatitudes of North America, as well as the reverse pattern. These dependence patterns are shown to correspond to blocked and zonal patterns of midtropospheric flow. This analysis extends the classical notion of correlation-based teleconnections to considering dependence in higher quantiles.

54 ENVIRONMENTAL SCIENCES↗

Non-destructive identification of absorptive damage sites by photoluminescence brightening

We present a non-destructive photoluminescence (PL) imaging strategy for probing damage growth behavior in fused silica under laser irradiation. Transient wide-field PL image measurements were conducted at varying excitation intensities to investigate the dynamics of radiative defect generation and annihilation in laser-induced damage sites. Our results reveal that, while low excitation intensities predominantly induce PL quenching due to defect annihilation, high-intensity excitation (>0.3 GW/cm 2 at 532 nm) triggers pronounced PL brightening (PLB), indicative of radiative defect generation. Image analysis demonstrates that PLB events are strongly correlated with subsequent damage growth (10 J/cm 2 at 351 nm), whereas overall PL intensity is not. No optically detectable morphological changes were observed during PLB, confirming the non-destructive nature of the technique. We propose that PLB arises from defect-assisted absorption of multiple photons at pre-existing absorptive centers, which enhances local absorptivity and initiates further defect formation. These findings establish PLB monitoring as a sensitive diagnostic tool for identifying damage sites with elevated absorptivity, enabling targeted maintenance and improved laser damage management in optical materials.

Materials science↗

Manipulation and statistical analysis of the fluid flow of polymer semiconductor solutions during meniscus-guided coating

Recent work in structure–processing relationships of polymer semiconductors have demonstrated the versatility and control of thin-film microstructure offered by meniscusguided coating (MGC) techniques. Here, we analyze the qualitative and quantitative aspects of solution shearing, a model MGC method, using coating blades augmented with arrays of pillars. The pillars induce local regions of high strain rates—both shear and extensional—not otherwise possible with unmodified blades, and we use fluid mechanical simulations to model and study a variety of pillar spacings and densities. We then perform a statistical analysis of 130 simulation variables to find correlations with three dependent variables of interest: thin-film degree of crystallinity and transistor field-effect mobilities for charge-transport parallel (Μ para ) and perpendicular (Μ perp ) to the coating direction. Our study suggests that simple fluid mechanical models can reproduce substantive correlations between the induced fluid flow and important performance metrics, providing a methodology for optimizing blade design.

36 MATERIALS SCIENCE↗

Glucuronidase Function in Clinical Samples

The purpose of this CRADA is to expand upon the work previously performed through CRADA No. PNNL/381. As explained in the previous CRADA, Glucuronidase enzymes are important for contributing to enterohepatic recycling of numerous therapeutic drug compounds, resulting in impaired or prolonged drug activity. Further, other pathways within the gut, such as bile acid metabolism through the action of bile salt hydrolase enzymes (BSH), have shown to impact both the development of colon cancers and impact recovery. Adapting the activity-based protein profiling (ABPP) technologies developed at PNNL to a microtiter plate-based chemical probe assay was the first step in demonstrating the clinical usability of the technology. With assay proof-of-concept complete through CRADA No. PNNL/381, clinical cohort testing using the developed assay is the next step towards commercialization of this technology. Some chemotherapeutic agents are mediated by gut-produced microbiota through enterohepatic circulation. For example, irinotecan, the first line treatment for many colon and other cancers, can be recycled into a patient’s system through gut microbiota produced glucuronidase enzymes. A significant percentage of patients subjected to irinotecan treatment experience dose-limiting diarrhea and gastric distress that limits treatment options and delays effective intervention. Relatedly, bile salt hydrolases modify ratios of bile acids in the gut, which alter nutrient and pharmaceutical uptake by the intestines and impact patient response to treatment. Coupled together these gut-mediated disorders can significantly decrease patient outcomes. In this project, we propose to investigate a clinical cohort of samples from colon cancer patients to better understand gut microbiome activities surrounding microbiota produced glucuronidases to aid clinician decisions and enhance therapeutic intervention. Our project will measure glucuronidase activity of individual patients and compare this activity to a variety of factors, including patient medical history, treatment response, and overall outcomes. Data will be compared with metagenomic, metabolomic, and proteomic analyses to fully defined the entire gut microbiome space and correlate results with the glucuronidase activity. Resultant analysis is expected to provide actionable information to direct decision making towards therapeutic intervention.

59 BASIC BIOLOGICAL SCIENCES↗

Decoding Cancer Variants of Unknown Significance for Helicase–Nuclease–RPA Complexes Orchestrating DNA Repair During Transcription and Replication

All tumors have DNA mutations, and a predictive understanding of those mutations could inform clinical treatments. However, 40% of the mutations are variants of unknown significance (VUS), with the challenge being to objectively predict whether a VUS is pathogenic and supports the tumor or whether it is benign. To objectively decode VUS, we mapped cancer sequence data and evolutionary trace (ET) scores onto crystallography and cryo-electron microscopy structures with variant impacts quantitated by evolutionary action (EA) measures. As tumors depend on helicases and nucleases to deal with transcription/replication stress, we targeted helicase–nuclease–RPA complexes: (1) XPB-XPD (within TFIIH), XPF-ERCC1, XPG, and RPA for transcription and nucleotide excision repair pathways and (2) BLM, EXO5, and RPA plus DNA2 for stalled replication fork restart. As validation, EA scoring predicts severe effects for most disease mutations, but disease mutants with low ET scores not only are likely destabilizing but also disrupt sophisticated allosteric mechanisms. For sites of disease mutations and VUS predicted to be severe, we found strong co-localization to ordered regions. Rare discrepancies highlighted the different survival requirements between disease and tumor mutations, as well as the value of examining proteins within complexes. In a genome-wide analysis of 33 cancer types, we found correlation between the number of mutations in each tumor and which pathways or functional processes in which the mutations occur, revealing different mutagenic routes to tumorigenesis. We also found upregulation of ancient genes including BLM, which supports a non-random and concerted cancer process: reversion to a unicellular, proliferation-uncontrolled, status by breaking multicellular constraints on cell division. Together, these genes and global analyses challenge the binary “driver” and “passenger” mutation paradigm, support a gradient impact as revealed by EA scoring from moderate to severe at a single gene level, and indicate reduced regulation as well as activity. The objective quantitative assessment of VUS scoring and gene overexpression in the context of functional interactions and pathways provides insights for biology, oncology, and precision medicine.

59 BASIC BIOLOGICAL SCIENCES↗

A Statistical Search for Star–Planet Interaction in the Ultraviolet Using GALEX

Most (∼82%) of the over 4000 confirmed exoplanets known today orbit very close to their host stars, within 0.5 au. Planets at such small orbital distances can result in significant interactions with their host stars, which can induce increased activity levels in them. In this work, we have searched for statistical evidence for star–planet interactions in the ultraviolet (UV) using the largest sample of 1355 Galaxy Evolution Explorer (GALEX) detected host stars with confirmed exoplanets and making use of the improved host-star parameters from Gaia DR2. From our analysis, we do not find any significant correlation between the UV activity of the host stars and their planetary properties. We further compared the UV properties of planet host stars to that of chromospherically active stars from the RAdial Velocity Experiment (RAVE) survey. Our results indicate that the enhancement in chromospheric activity of host stars due to star–planet interactions may not be significant enough to reflect in their near- and far-UV broadband flux.

79 ASTRONOMY AND ASTROPHYSICS↗

Efficient Mass Estimate at the Core of Strong Lensing Galaxy Clusters Using the Einstein Radius

In the era of large surveys, yielding thousands of galaxy clusters, efficient mass proxies at all scales are necessary in order to fully utilize clusters as cosmological probes. At the cores of strong lensing clusters, the Einstein radius can be turned into a mass estimate. This efficient method has been routinely used in literature, in lieu of detailed mass models; however, its scatter, assumed to be similar to 30%, has not yet been quantified. Here, we assess this method by testing it against ray-traced images of cluster-scale halos from the Outer RimN-body cosmological simulation. We measure a scatter of 13.9% and a positive bias of 8.8% in M (<θ E ), with no systematic correlation with total cluster mass, concentration, or lens or source redshifts. We find that increased deviation from spherical symmetry increases the scatter; conversely, where the lens produces arcs that cover a large fraction of its Einstein circle, both the scatter and the bias decrease. While spectroscopic redshifts of the lensed sources are critical for accurate magnifications and time delays, we show that for the purpose of estimating the total enclosed mass, the scatter introduced by source redshift uncertainty is negligible compared to other sources of error. Finally, we derive and apply an empirical correction that eliminates the bias, and reduces the scatter to 10.1% without introducing new correlations with mass, redshifts, or concentration. Our analysis provides the first quantitative assessment of the uncertainties in M (<θ E ), and enables its effective use as a core mass estimator of strong lensing galaxy clusters.

79 ASTRONOMY AND ASTROPHYSICS↗

A Systematic Analysis of Stellar Populations in the Host Galaxies of Changing-look AGNs

“Changing-look” active galactic nuclei (CL-AGNs) are a newly discovered class of AGNs that show the appearance (or disappearance) of broad emission lines within short timescales (months to years),and are often associated with dramatic changes in their continuum emissions. They provide us with an unprecedented chance to directly investigate the host galaxy properties with minimal contamination from the luminous central engine during the turn-off state, which is difficult for normal luminous AGNs. In this work, for the first time, we systematically characterize the stellar populations and star formation histories of host galaxies for 26 turn-off CL-AGNs using the stellar population synthesis code STARLIGHT. We find that the stellar populations of CL-AGNs are similar to those of normal AGNs, except that the intermediate stellar populations contribute more fractions. We estimate their stellar velocity dispersions (σ * ) and black hole masses (M BH , vir ), and find that CL-AGNs also follow the overall M BH –σ * relationship. We also confirm the previous claims that CL-AGNs tend to be biased toward lower Eddington ratios, and that their extreme variabilities are more likely due to the intrinsic changes of the accretion rates. In addition, CL-AGNs with recent star formations tend to have higher Eddington ratios. Compared with previous studies, our analysis suggests that there may be a correlation between CL-AGN host galaxy properties and their CL phenomena.

79 ASTRONOMY AND ASTROPHYSICS↗

Activation of propane on Ag–PdO(101) model surfaces

Oxidation of alkanes remains a central challenge in catalysis due to the high activation barriers of C–H bonds and the thermodynamic favorability of complete oxidation. Palladium oxide (PdO), particularly its (101) facet, is known for its high reactivity in alkane oxidation, which is attributed to its coordinatively unsaturated palladium (Pd) and O atoms. In this study, we investigate the effect of silver (Ag) incorporation on the oxidation behavior of propane over PdO(101) using temperature-programmed reaction spectroscopy (TPRS) under controlled conditions. While pristine PdO(101) exhibits complete oxidation of propane with CO₂ and H₂O desorption at high temperatures (approximately 475 K), Ag incorporation induces a new CO₂ desorption peak at significantly lower temperatures (approximately 330 K). This shift is attributed to the formation of new active sites at the Ag–PdO(101) interface. Quantitative analysis reveals that low-temperature activity correlates with Ag coverage, while overall CO₂ production decreases, suggesting a redistribution of reactivity rather than an increase in active surface area. Activation energy estimations using the Redhead method confirm that C–H bond activation becomes more facile at the interface, with a 46 kJ/mol reduction compared to pristine PdO(101). These findings demonstrate that incorporating a less reactive metal such as Ag into PdO surfaces not only modifies the reaction energetics but also enables the design of bimetallic catalysts with improved selectivity for partial oxidation reactions.

Chemistry↗

The Dark Energy Survey Year 3 high-redshift sample: selection, characterization, and analysis of galaxy clustering

ABSTRACT The fiducial cosmological analyses of imaging surveys like DES typically probe the Universe at redshifts z < 1. We present the selection and characterization of high-redshift galaxy samples using DES Year 3 data, and the analysis of their galaxy clustering measurements. In particular, we use galaxies that are fainter than those used in the previous DES Year 3 analyses and a Bayesian redshift scheme to define three tomographic bins with mean redshifts around z ∼ 0.9, 1.2, and 1.5, which extend the redshift coverage of the fiducial DES Year 3 analysis. These samples contain a total of about 9 million galaxies, and their galaxy density is more than 2 times higher than those in the DES Year 3 fiducial case. We characterize the redshift uncertainties of the samples, including the usage of various spectroscopic and high-quality redshift samples, and we develop a machine-learning method to correct for correlations between galaxy density and survey observing conditions. The analysis of galaxy clustering measurements, with a total signal to noise S/N ∼ 70 after scale cuts, yields robust cosmological constraints on a combination of the fraction of matter in the Universe Ωm and the Hubble parameter h, $\Omega _m h = 0.195^{+0.023}_{-0.018}$, and 2–3 per cent measurements of the amplitude of the galaxy clustering signals, probing galaxy bias and the amplitude of matter fluctuations, bσ8. A companion paper (in preparation) will present the cross-correlations of these high-z samples with cosmic microwave background lensing from Planck and South Pole Telescope, and the cosmological analysis of those measurements in combination with the galaxy clustering presented in this work.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Pointer States and Quantum Darwinism with Two-Body Interactions

Quantum Darwinism explains the emergence of classical objectivity within a quantum universe. However, to date, most research on quantum Darwinism has focused on specific models and their stationary properties. To further our understanding of the quantum-to-classical transition, it appears desirable to identify the general criteria a Hamiltonian has to fulfill to support classical reality. To this end, we categorize all N-qubit models with two-body interactions, and show that only those with separable interaction of the system and environment can support a pointer basis. We further demonstrate that “perfect” quantum Darwinism can only emerge if there are no intra-environmental interactions. Our analysis is complemented by solving the ensuing dynamics. We find that in systems exhibiting information scrambling, the dynamical emergence of classical objectivity directly competes with the non-local spread of quantum correlations. Our rigorous findings are illustrated through the numerical analysis of four representative models.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Small-correlated-against-large estimator for the lensing of the cosmic microwave background

Weak gravitational lensing of the cosmic microwave background (CMB) carries imprints of the physics operating at redshifts much lower than that of recombination and serves as an important probe of cosmological structure formation, dark matter physics, and the mass of neutrinos. Reconstruction of the CMB lensing deflection field through use of quadratic estimators has proven successful with existing data but is known to be sub-optimal on small angular scales ($\ell > 3000$) for experiments with low noise levels. Future experiments will provide better observations in this regime, but these techniques will remain statistically limited by their approximations. We show that correlations between fluctuations of the large-scale temperature gradient power of the CMB sourced by $\ell < 2000$, and fluctuations of the local small-scale temperature power reveal a lensing signal which is prominent in even the real-space pixel statistics across a CMB temperature map. We present the development of the Small Correlated Against Large Estimator (SCALE), a novel estimator for the CMB lensing spectrum which offers promising complementary analysis alongside other reconstruction techniques in this regime. The SCALE method computes correlations between both the large/small-scale temperature gradient power in harmonic space, and it is able to quantitatively recover unbiased statistics of the CMB lensing field without the need for map-level reconstruction. SCALE can outperform quadratic estimator signal-to-noise by a factor of up to 1.5 in current and upcoming experiments for CMB lensing power spectra $C_{6000 < L < 8000}^{\phi\phi}$.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Decoding polymer self-dynamics using a two-step approach

The self-correlation function and corresponding self-intermediate scattering function in Fourier space are important quantities for describing the molecular motions of liquids. This work draws attention to a largely overlooked issue concerning the analysis of these space-time density-density correlation functions of polymers. Here, we show that the interpretation of non-Gaussian behavior of polymers is generally complicated by intrachain averaging of distinct self-dynamics of different segments. By the very nature of the mathematics involved, the averaging process not only conceals critical dynamical information, but also contributes to the observed non-Gaussian dynamics. To fully expose this issue and provide a thorough benchmark of polymer self-dynamics, we perform analyses of coarse-grained molecular dynamics simulations of linear and ring polymer melts as well as several theoretical models using a “two-step” approach, where interchain and intrachain averagings of segmental self-dynamics are separated. While past investigations primarily focused on the average behavior, our results indicate that a more nuanced approach to polymer self-dynamics is clearly required.

36 MATERIALS SCIENCE↗

Observability of dark matter substructure with pulsar timing correlations

Dark matter substructure on small scales is currently weakly constrained, and its study may shed light on the nature of the dark matter. In this work we observe the gravitational effects of dark matter substructure on measured pulsar phases in pulsar timing arrays (PTAs). Due to the stability of pulse phases observed over several years, dark matter substructure around the Earth-pulsar system can imprint discernible signatures in gravitational Doppler and Shapiro delays. We compute pulsar phase correlations induced by general dark matter substructure, and project constraints for a few models such as monochromatic primordial black holes (PBHs), and Cold Dark Matter (CDM)-like NFW subhalos. This work extends our previous analysis, which focused on static or single transiting events, to a stochastic analysis of multiple transiting events. We find that stochastic correlations, in a PTA similar to the Square Kilometer Array (SKA), are uniquely powerful to constrain subhalos as light as ~ 10 -13 M ⊙ , with concentrations as low as that predicted by standard CDM.

79 ASTRONOMY AND ASTROPHYSICS↗

Orientational Pair Correlations and Local Structure of Benzonitrile from Molecular Dynamics Simulations with Comparisons to Experiments [plus supplemental information]

Here, we present an experimentally parametrized molecular dynamics study of single-molecule and collective orientational relaxation in neat benzonitrile through the analysis of the reorientational anisotropy and polarizability anisotropy time-correlation function (PA-TCF). The simulations show that the PA-TCF is dominated by collective reorientation after 20 ps. Collective reorientation is found to be slower than single-molecule reorientation by a factor of 1.67, consistent with recent experiments. The simulations provide direct evidence of local antiparallel benzonitrile configurations. These structures, which have been the center of some debate, are responsible for the slower rate of collective vs. single-molecule reorientation in the liquid. Further structural analysis indicates that significant Coulombic interactions between the nitrile group and hydrogen atoms on adjacent molecules play a role in the formation of the antiparallel structures. The single-molecule dynamics reflected in the anisotropy are complex and consist of a ballistic regime, restricted angular diffusion, and spatially anisotropic free diffusion. The principal components of the rotational diffusion tensor are independently obtained and shown to reproduce the free diffusion regime of the anisotropy for each principal axis according to the predictions of a previous theory.

14 SOLAR ENERGY↗

Study of the p-p-K + and p-p-K - dynamics using the femtoscopy technique

The interactions of kaons (K) and antikaons ($\bar{K}$ ) with few nucleons (N) were studied so far using kaonic atom data and measurements of kaon production and interaction yields in nuclei. Some details of the three-body $\bar{K}$NN and NN dynamics are still not well understood, mainly due to the overlap with multi-nucleon interactions in nuclei. An alternative method to probe the dynamics of three-body systems with kaons is to study the final state interaction within triplet of particles emitted in pp collisions at the Large Hadron Collider, which are free from effects due to the presence of bound nucleons. This Letter reports the first femtoscopic study of p–p–K + and p–p–K - correlations measured in high-multiplicity pp collisions at $\sqrt{s}$ = 13 TeV by the ALICE Collaboration. The analysis shows that the measured p–p–K + and p–p–K - correlation functions can be interpreted in terms of pairwise interactions in the triplets, indicating that the dynamics of such systems is dominated by the two-body interactions without significant contributions from three-body effects or bound states.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Characterizing crystalline defects in single nanoparticles from angular correlations of single-shot diffracted X-rays

Characterizing and controlling the uniformity of nanoparticles is crucial for their application in science and technology because crystalline defects in the nanoparticles strongly affect their unique properties. Recently, ultra-short and ultra-bright X-ray pulses provided by X-ray free-electron lasers (XFELs) opened up the possibility of structure determination of nanometre-scale matter with Å spatial resolution. However, it is often difficult to reconstruct the 3D structural information from single-shot X-ray diffraction patterns owing to the random orientation of the particles. This report proposes an analysis approach for characterizing defects in nanoparticles using wide-angle X-ray scattering (WAXS) data from free-flying single nanoparticles. The analysis method is based on the concept of correlated X-ray scattering, in which correlations of scattered X-ray are used to recover detailed structural information. WAXS experiments of xenon nanoparticles, or clusters, were conducted at an XFEL facility in Japan by using the SPring-8 Ångstrom compact free-electron laser (SACLA). Bragg spots in the recorded single-shot X-ray diffraction patterns showed clear angular correlations, which offered significant structural information on the nanoparticles. The experimental angular correlations were reproduced by numerical simulation in which kinematical theory of diffraction was combined with geometric calculations. We also explain the diffuse scattering intensity as being due to the stacking faults in the xenon clusters.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗