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At least 631 records · Page 35

Examining polymer‐protein biophysical interactions with small‐angle x‐ray scattering and quartz crystal microbalance with dissipation

Abstract Polymer‐protein hybrids can be deployed to improve protein solubility and stability in denaturing environments. While previous work used robotics and active machine learning to inform new designs, further biophysical information is required to ascertain structure–function behavior. Here, we show the value of tandem small‐angle x‐ray scattering (SAXS) and quartz crystal microbalance with dissipation (QCMD) experiments to reveal detailed polymer‐protein interactions with horseradish peroxidase (HRP) as a test case. Of particular interest was the process of polymer‐protein complex formation under thermal stress whereby SAXS monitors formation in solution while QCMD follows these dynamics at an interface. The radius of gyration ( R g ) of the protein as measured by SAXS does not change significantly in the presence of polymer under denaturing conditions, but thickness and dissipation changes were observed in QCMD data. SAXS data with and without thermal stress were utilized to create bead models of the potential complexes and denatured enzyme, and each model fit provided insight into the degree of interactions. Additionally, QCMD data demonstrated that HRP deforms by spreading upon surface adsorption at low concentration as shown by longer adsorption times and smaller frequency shifts. In contrast, thermally stressed and highly inactive HRP had faster adsorption kinetics. The combination of SAXS and QCMD serves as a framework for biophysical characterization of interactions between proteins and polymers which could be useful in designing polymer‐protein hybrids.

60 APPLIED LIFE SCIENCES↗

Vegetation type is an important predictor of the arctic summer land surface energy budget

Despite the importance of high-latitude surface energy budgets (SEBs) for land-climate interactions in the rapidly changing Arctic, uncertainties in their prediction persist. Here, we harmonize SEB observations across a network of vegetated and glaciated sites at circumpolar scale (1994–2021). Our variance-partitioning analysis identifies vegetation type as an important predictor for SEB-components during Arctic summer (June-August), compared to other SEB-drivers including climate, latitude and permafrost characteristics. Differences among vegetation types can be of similar magnitude as between vegetation and glacier surfaces and are especially high for summer sensible and latent heat fluxes. The timing of SEB-flux summer-regimes (when daily mean values exceed 0 Wm –2 ) relative to snow-free and -onset dates varies substantially depending on vegetation type, implying vegetation controls on snow-cover and SEB-flux seasonality. Our results indicate complex shifts in surface energy fluxes with land-cover transitions and a lengthening summer season, and highlight the potential for improving future Earth system models via a refined representation of Arctic vegetation types.

54 ENVIRONMENTAL SCIENCES↗

The interaction of moderately strong shock waves with thick perforated walls of low porosity

A theoretical prediction is given of the flow through thick perforated walls of low porosity resulting from the impingement of a moderately strong traveling shock wave. The model was a flat plate positioned normal to the direction of the flow. Holes bored in the plate parallel to the direction of the flow provided nominal hole length-to-diameter ratios of 10:1 and an axial porosity of 25 percent of the flow channel cross section. The flow field behind the reflected shock wave was assumed to behave as a reservoir producing a quasi-steady duct flow through the model. Rayleigh and Fanno duct flow theoretical computations for each of three possible auxiliary wave patterns that can be associated with the transmitted shock (to satisfy contact surface compatibility) were used to provide bounding solutions as an alternative to the more complex influence coefficients method. Qualitative and quantitative behavior was verified in a 1.5- by 2.0-in. helium shock tube. High speed Schlieren photography, piezoelectric pressure-time histories, and electronic-counter wave speed measurements were used to assess the extent of correlation with the theoretical flow models. Reduced data indicated the adequacy of the bounding theory approach to predict wave phenomena and quantitative response.

Grant, D. J.↗

Meteorological and air pollution modeling for an urban airport

Results are presented of numerical experiments modeling meteorology, multiple pollutant sources, and nonlinear photochemical reactions for the case of an airport in a large urban area with complex terrain. A planetary boundary-layer model which predicts the mixing depth and generates wind, moisture, and temperature fields was used; it utilizes only surface and synoptic boundary conditions as input data. A version of the Hecht-Seinfeld-Dodge chemical kinetics model is integrated with a new, rapid numerical technique; both the San Francisco Bay Area Air Quality Management District source inventory and the San Jose Airport aircraft inventory are utilized. The air quality model results are presented in contour plots; the combined results illustrate that the highly nonlinear interactions which are present require that the chemistry and meteorology be considered simultaneously to make a valid assessment of the effects of individual sources on regional air quality.

Swan, P. R.↗

Thermoplastic Composites for Research-Model Components

Oriented unidirectional prepreg tapes formed in ceramic molds. New technique developed at Langley Research Center, using ceramic mold for fabrication of models from graphite/thermoplastic materials. Upper surface of wings and fuselage of advanced airplane selected as shape to test fabrication technique. Technique well suited for other complex shapes as well. Thermoplastic composite easily workable with normal shop equipment and painted and repaired by standard methods.

Guenther, B. F.↗

Influence of airfoil geometry on delta wing leading-edge vortices and vortex-induced aerodynamics at supersonic speeds

An assessment of the influence of airfoil geometry on delta wing leading edge vortex flow and vortex induced aerodynamics at supersonic speeds is discussed. A series of delta wing wind tunnel models were tested over a Mach number range from 1.7 to 2.0. The model geometric variables included leading edge sweep and airfoil shape. Surface pressure data, vapor screen, and oil flow photograph data were taken to evaluate the complex structure of the vortices and shocks on the family of wings tested. The data show that airfoil shape has a significant impact on the wing upper surface flow structure and pressure distribution, but has a minimal impact on the integrated upper surface pressure increments.

Wood, Richard M.↗

Implementation and operation of three fractal measurement algorithms for analysis of remote-sensing data

Fractal geometry is increasingly becoming a useful tool for modeling natural phenomena. As an alternative to Euclidean concepts, fractals allow for a more accurate representation of the nature of complexity in natural boundaries and surfaces. The purpose of this paper is to introduce and implement three algorithms in C code for deriving fractal measurement from remotely sensed data. These three methods are: the line-divider method, the variogram method, and the triangular prism method. Remote-sensing data acquired by NASA's Calibrated Airborne Multispectral Scanner (CAMS) are used to compute the fractal dimension using each of the three methods. These data were obtained as a 30 m pixel spatial resolution over a portion of western Puerto Rico in January 1990. A description of the three methods, their implementation in PC-compatible environment, and some results of applying these algorithms to remotely sensed image data are presented.

Jaggi, S.↗

Multi-resolution processing for fractal analysis of airborne remotely sensed data

Fractal geometry is increasingly becoming a useful tool for modeling natural phenomenon. As an alternative to Euclidean concepts, fractals allow for a more accurate representation of the nature of complexity in natural boundaries and surfaces. Since they are characterized by self-similarity, an ideal fractal surface is scale-independent; i.e. at different scales a fractal surface looks the same. This is not exactly true for natural surfaces. When viewed at different spatial resolutions parts of natural surfaces look alike in a statistical manner and only for a limited range of scales. Images acquired by NASA's Thermal Infrared Multispectral Scanner are used to compute the fractal dimension as a function of spatial resolution. Three methods are used to determine the fractal dimension - Schelberg's line-divider method, the variogram method, and the triangular prism method. A description of these methods and the results of applying these methods to a remotely-sensed image is also presented. Five flights were flown in succession at altitudes of 2 km (low), 6 km (mid), 12 km (high), and then back again at 6 km and 2 km. The area selected was the Ross Barnett reservoir near Jackson, Mississippi. The mission was flown during the predawn hours of 1 Feb. 1992. Radiosonde data was collected for that duration to profile the characteristics of the atmosphere. This corresponds to 3 different pixel sizes - 5m, 15m, and 30m. After, simulating different spatial sampling intervals within the same image for each of the 3 image sets, the results are cross-correlated to compare the extent of detail and complexity that is obtained when data is taken at lower spatial intervals.

Jaggi, S.↗

Monthly atmospheric and oceanographic surface fields for the western North Atlantic: December 1986 - April 1989

Monthly atmospheric and oceanographic variables for the western North Atlantic Ocean from various sources are presented as contour or vector maps. These fields were assembled for a study of the upper ocean heat budget. Atmospheric fields include the net surface heat fluxes and wind stress derived from the 1000 mb winds from the European Center for Medium-range Weather Forecasting (ECMWF). Oceanographic fields include the sea surface height from the Geosat radar altimeter and sea surface temperature from the Advanced Very High Resolution Radiometer (AVHRR). An additional estimate of net surface heat flux is shown; this estimate was derived by assimilating winds, currents and ocean temperatures into a mixed layer model. The maps show a complex interplay of fluctuations in the winds and heat fluxes, and in the structure and temperature gradients of the Gulf Stream system. Some comments are offered on a comparison of the two heat flux estimates.

Caruso, Michael J.↗

Observations and Modeling of the Transient General Circulation of the North Pacific Basin

Because of recent progress in satellite altimetry and numerical modeling and the accumulation and archiving of long records of hydrographic and meteorological variables, it is becoming feasible to describe and understand the transient general circulation of the ocean (i.e., variations with spatial scales larger than a few hundred kilometers and time scales of seasonal and longer-beyond the mesoscale). We have carried out various studies in investigation of the transient general circulation of the Pacific Ocean from a coordinated analysis of satellite altimeter data, historical hydrographic gauge data, scatterometer wind observations, reanalyzed operational wind fields, and a variety of ocean circulation models. Broadly stated, our goal was to achieve a phenomenological catalogue of different possible types of large-scale, low-frequency variability, as a context for understanding the observational record. The approach is to identify the simplest possible model from which particular observed phenomena can be isolated and understood dynamically and then to determine how well these dynamical processes are represented in more complex Oceanic General Circulation Models (OGCMs). Research results have been obtained on Rossby wave propagation and transformation, oceanic intrinsic low-frequency variability, effects of surface gravity waves, pacific data analyses, OGCM formulation and developments, and OGCM simulations of forced variability.

McWilliams, James C.↗

Solid Lubrication Fundamentals and Applications: Abrasion: Plowing and Cutting - Chapter 5

Chapter 5 discusses abrasion, a common wear phenomenon of great economic importance. It has been estimated that 50% of the wear encountered in industry is due to abrasion. Also, it is the mechanism involved in the finishing of many surfaces. Experiments are described to help in understanding the complex abrasion process and in predicting friction and wear behavior in plowing and/or cutting. These experimental modelings and measurements used a single spherical pin (asperity) and a single wedge pin (asperity). Other two-body and three-body abrasion studies used hard abrasive particles.

Miyoshi, Kazuhisa↗

Simulation Tools Model Icing for Aircraft Design

Here s a simple science experiment to try: Place an unopened bottle of distilled water in your freezer. After 2-3 hours, if the water is pure enough, you will notice that it has not frozen. Carefully pour the water into a bowl with a piece of ice in it. When it strikes the ice, the water will instantly freeze. One of the most basic and commonly known scientific facts is that water freezes at around 32 F. But this is not always the case. Water lacking any impurities for ice crystals to form around can be supercooled to even lower temperatures without freezing. High in the atmosphere, water droplets can achieve this delicate, supercooled state. When a plane flies through clouds containing these droplets, the water can strike the airframe and, like the supercooled water hitting the ice in the experiment above, freeze instantly. The ice buildup alters the aerodynamics of the plane - reducing lift and increasing drag - affecting its performance and presenting a safety issue if the plane can no longer fly effectively. In certain circumstances, ice can form inside aircraft engines, another potential hazard. NASA has long studied ways of detecting and countering atmospheric icing conditions as part of the Agency s efforts to enhance aviation safety. To do this, the Icing Branch at Glenn Research Center utilizes a number of world-class tools, including the Center s Icing Research Tunnel and the NASA 607 icing research aircraft, a "flying laboratory" for studying icing conditions. The branch has also developed a suite of software programs to help aircraft and icing protection system designers understand the behavior of ice accumulation on various surfaces and in various conditions. One of these innovations is the LEWICE ice accretion simulation software. Initially developed in the 1980s (when Glenn was known as Lewis Research Center), LEWICE has become one of the most widely used tools in icing research and aircraft design and certification. LEWICE has been transformed over the years from strictly a research tool to one used routinely by industry and other government agencies. Glenn contractor William Wright has been the architect of this development, supported by a team of researchers investigating icing physics, creating validation data, and ensuring development according to standard software engineering practices. The program provides a virtual simulation environment for determining where water droplets strike an airfoil in flight, what kind of ice would result, and what shape that ice would take. Users can enter geometries for specific, two-dimensional cross sections of an airfoil or other airframe surface and then apply a range of inputs - different droplet sizes, temperatures, airspeeds, and more - to model how ice would build up on the surface in various conditions. The program s versatility, ease of use, and speed - LEWICE can run through complex icing simulations in only a few minutes - have contributed to it becoming a popular resource in the aviation industry.

Source record↗

Bias Correction of Hydrologic Projections Strongly Impacts Inferred Climate Vulnerabilities in Institutionally Complex Water Systems

Water-resources planners use regional water management models (WMMs) to identify vulnerabilities to climate change. Frequently, dynamically downscaled climate inputs are used in conjunction with land-surface models (LSMs) to provide hydrologic streamflow projections, which serve as critical inputs for WMMs. Here, we show how even modest projection errors can strongly affect assessments of water availability and financial stability for irrigation districts in California. Specifically, our results highlight that LSM errors in projections of flood and drought extremes are highly interactive across timescales, path-dependent, and can be amplified when modeling infrastructure systems (e.g., misrepresenting banked groundwater). Common strategies for reducing errors in deterministic LSM hydrologic projections (e.g., bias correction) can themselves strongly distort projected climate vulnerabilities and misrepresent their inferred financial consequences. Overall, our results indicate a need to move beyond standard deterministic climate projection and error management frameworks that are dependent on single simulated climate change scenario outcomes.

Keyvan Malek↗

Structural properties of aqueous grown polydopamine thin films determined by neutron reflectometry

Here, in this work, neutron reflectometry (NR) studies of the bio-mimetic polymer, polydopamine (PDA), deposited from differing initial concentrations of precursor material dopamine hydrochloride for a range of polymerization times, is reported. PDA can form a complex and highly versatile polymer film, with many structure studies having been performed previously, but a comprehensive structural determination of PDA by NR is lacking in the literature. It was found that simple box models were incapable of fully explaining the observed data, necessitating the use of a composite model consisting of the weighted average of both the 1 and 2 box models to fully capture the heterogeneous nature of the PDA film structure. Confocal laser scanning microscopy (CLSM) and atomic force microscopy (AFM) were performed to capture the surface structure and relative mechanical difference between the separate domains of the PDA. The CLSM results provide evidence that the PDA domains are larger than the coherent scattering length of a neutron used in these measurements, 10μm, supporting the need for a composite model. The AFM measurements show complex structure below the coherence length provide physical justification for the two box model. It was determined that film structure and quality are both heavily impacted by the initial concentration of dopamine hydrochloride and the polymerization time, giving confidence to the highly customizable nature of PDA as an adhesion promoting interface treatment in composite systems, such as plastic bonded explosives (PBX).

36 MATERIALS SCIENCE↗

Relationship between radiation-induced aberrations in individual chromosomes and their DNA content: effects of interaction distance

PURPOSE: To study the effect of the interaction distance on the frequency of inter- and intrachromosome exchanges in individual chromosomes with respect to their DNA content. Assumptions: Chromosome exchanges are formed by misrejoining of two DNA double-strand breaks (DSB) induced within an interaction distance, d. It is assumed that chromosomes in G(0)/G(1) phase of the cell cycle occupy a spherical domain in a cell nucleus, with no spatial overlap between individual chromosome domains. RESULTS: Formulae are derived for the probability of formation of inter-, as well as intra-, chromosome exchanges relating to the DNA content of the chromosome for a given interaction distance. For interaction distances <1 microm, the relative frequency of interchromosome exchanges predicted by the present model is similar to that by Cigarran et al. (1998) based on the assumption that the probability of interchromosome exchanges is proportional to the "surface area" of the chromosome territory. The "surface area" assumption is shown to be a limiting case of d-->0 in the present model. The present model also predicts that the probability of intrachromosome exchanges occurring in individual chromosomes is proportional to their DNA content with correction terms. CONCLUSION: When the interaction distance is small, the "surface area" distribution for chromosome participation in interchromosome exchanges has been expected. However, the present model shows that for the interaction distance as large as 1 microm, the predicted probability of interchromosome exchange formation is still close to the surface area distribution. Therefore, this distribution does not necessarily rule out the formation of complex chromosomal aberrations by long-range misrejoining of DSB.

Non-programmatic↗

Effects of roughness on heating and boundary-layer transition. Part 1: Effects of simulated panel joints on boundary-layer transition

The effects of distributed roughness, arising from space shuttle orbiter panel joints, on boundary layer transition are investigated. The North American Rockwell 134B delta wing shuttle configuration was used for the study. Results show: (1) Premature boundary layer transition occurred in models having simulated heat shield panels with rased joints. (2) Laminar flow was maintained with slot type panel joint models to a Reynolds number twice that at which transition occurred in raised joints. (3) Significant increases in peak surface temperature and the time during which turbulent flow occurs may result from distributed roughness of heat shield panel joints. (4) Laminar and turbulent heating levels were predicted within available theories. (5) A complex interference between the wing and fuselage flow was observed in the delta wing model.

Seegmiller, H. L.↗

Mars Global Climate Modeling.

Scientists use Global Climate Models (GCMs) to better under the current and past climate states of terrestrial (solid surface) bodies in our solar system and beyond, and the physical processes that control them. GCMs are complex, multi-dimensional computer codes that can generally be divided into two parts: the geophysical fluid dynamics (GFD) framework, which represents accelerations and spatially resolved processes, and the physics routines, which provide the forcing functions for the circulation. Producing a GCM that is appropriate for a particular body—Mars, for example—requires implementing the appropriate physics routines (e.g., radiative transfer, planetary boundary layer physics, dust lifting physics to generate dust storms, etc.) for that body. In this talk, I will give an overview of the components of the NASA Ames Mars GCM and discuss some of the scientific questions we address with this state-of-the-art numerical model.

Melinda A. Kahre↗

Measurement of terms and parameters in turbulent models

Experimental measurements of the mean and turbulent velocity field in a water flow, turn-around-duct is documented. The small radius of curvature duct experiments were made over a range of Reynolds numbers (based on a duct height of 10 cm) from 70,000 to 500,000. For this particular channel, the flow is dominated by the inertia forces. Use of the local bulk velocity to non-dimensionalize the local velocity was found to limit Reynolds number effects to the regions very close to the wall. Only secondary effects on the flow field were observed when the inlet or exit boundary conditions were altered. The flow over the central two-thirds of the channel was two-dimensional. Mean tangetial and radial velocities, streamlines, pressure distributions, surface shear stress; tangential, radial and lateral turbulent velocities and the Reynolds turbulent shear values are tabulated in other reports. It is evident from the experimental study that a complex numerical modeling technique must be developed to predict the flow in the turn-around-duct. The model must be able to predict relaminarization along the inner-convex-wall. It must also allow for the major increase in turbulence produced by the outer-concave-wall.

Sandborn, Virgil A.↗