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At least 631 records · Page 35

Range and strength of mechanical interactions of force dipoles in elastic fiber networks

Mechanical forces generated by myosin II molecular motors drive diverse cellular processes, most notably shape change, division and locomotion. These forces may be transmitted over long range through the cytoskeletal medium – a disordered, viscoelastic network of biopolymers. The resulting cell size scale force chains can in principle mediate mechanical interactions between distant actomyosin units, leading to self-organized structural order in the cell cytoskeleton. Inspired by such force transmission through elastic structures in the cytoskeleton, we consider a percolated fiber lattice network, where fibers are represented as linear elastic elements that can both bend and stretch, and the contractile activity of myosin motors is represented by force dipoles. Then, by using a variety of metrics, we show how two such contractile force dipoles interact with each other through their mutual mechanical deformations of the elastic fiber network. As a prelude to two-dipole interactions, we quantify how forces propagate through the network from a single anisotropic force dipole by analyzing clusters of nodes connected by highly strained bonds, as well as through the decay rate of strain energy with distance from a force dipole. We show that predominant fiber bending screens out force propagation, resulting in reduced and strongly network configuration-dependent dipole interactions. On the other hand, stretching-dominated networks support longer-ranged inter-dipole interactions that recapitulate the predictions of linear elasticity theory. By characterizing the differences between tensile and compressive force propagation in the fiber network, we show how inter-dipole interaction depends on the dipoles’ mutual separation and orientation. The resulting elastic interaction energy may mediate a force between multiple distant dipoles, leading to their self-organization into ordered configurations. In conclusion, this provides a potential pathway for active mechanical force-driven structural order in elastic biopolymer networks.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Uncovering fast solid-acid proton conductors based on dynamics of polyanion groups and proton bonding strength

Achieving high proton conductivity in inorganic solids is key for advancing many electrochemical technologies, including low-energy nano-electronics and energy-efficient fuel cells and electrolyzers. A quantitative understanding of the physical traits of a material that regulate proton diffusion is necessary for accelerating the discovery of fast proton conductors. In this work, we have mapped the structural, chemical and dynamic properties of solid acids to the elementary steps of the Grotthuss mechanism of proton diffusion. Our approach combines ab initio molecular dynamics simulations, analysis of phonon spectra and atomic structure calculations. We have identified the donor–hydrogen bond lengths and the acidity of polyanion groups as key descriptors of local proton transfer and the vibrational frequencies of the cation framework as the key descriptor of lattice flexibility. The latter facilitates rotations of polyanion groups and long-range proton migration in solid acid proton conductors. The calculated lattice flexibility also correlates with the experimentally reported superprotonic transition temperatures. Using these descriptors, we have screened the Materials Project database and identified potential solid acid proton conductors with monovalent, divalent and trivalent cations, including Ag + , Sr 2+ , Ba 2+ and Er 3+ cations, which go beyond the traditionally considered monovalent alkali cations (Cs + , Rb + , K + , and NH 4 + ) in solid acids.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Spall strength of additively repaired 304L stainless steel

Additive manufacturing has the potential to repair damaged parts, but the performance of additive materials under high strain rate loading is still uncertain—especially with the added complexity of an interface with an existing wrought material. In this work, 304L stainless steel samples were intentionally damaged and then repaired with wire-fed laser additive manufacturing. The samples were subjected to shock loading to generate incipient spall. Velocimetry and post-mortem metallography results show that when the additive repair process parameters are optimized to reduce porosity and match the equation of state of the original material, the influence of the repair region on the shock propagation is negligible. In conclusion, the free-surface velocity profile and internal damage morphology of the repaired sample are shown to be practically identical to the pristine material.

36 MATERIALS SCIENCE↗

Mechanism of superconductivity in the Hubbard model at intermediate interaction strength

We study the fluctuations responsible for pairing in the d -wave superconducting state of the two-dimensional Hubbard model at intermediate coupling within a cluster dynamical mean-field theory with a numerically exact quantum impurity solver. By analyzing how momentum- and frequency-dependent fluctuations generate the d -wave superconducting state in different representations, we identify antiferromagnetic fluctuations as the pairing glue of superconductivity in both the underdoped and the overdoped regime. Nevertheless, in the intermediate coupling regime, the predominant magnetic fluctuations may differ significantly from those described by conventional spin fluctuation theory.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Identifying strengths and weaknesses of methods for computational network inference from single-cell RNA-seq data

Single-cell RNA-sequencing (scRNA-seq) offers unparalleled insight into the transcriptional programs of different cellular states by measuring the transcriptome of thousands of individual cells. An emerging problem in the analysis of scRNA-seq is the inference of transcriptional gene regulatory networks and a number of methods with different learning frameworks have been developed to address this problem. Here, we present an expanded benchmarking study of eleven recent network inference methods on seven published scRNA-seq datasets in human, mouse, and yeast considering different types of gold standard networks and evaluation metrics. We evaluate methods based on their computing requirements as well as on their ability to recover the network structure. We find that, while most methods have a modest recovery of experimentally derived interactions based on global metrics such as Area Under the Precision Recall curve, methods are able to capture targets of regulators that are relevant to the system under study. Among the top performing methods that use only expression were SCENIC, PIDC, MERLIN or Correlation. Addition of prior biological knowledge and the estimation of transcription factor activities resulted in the best overall performance with the Inferelator and MERLIN methods that use prior knowledge outperforming methods that use expression alone. We found that imputation for network inference did not improve network inference accuracy and could be detrimental. Comparisons of inferred networks for comparable bulk conditions showed that the networks inferred from scRNA-seq datasets are often better or at par with the networks inferred from bulk datasets. Our analysis should be beneficial in selecting methods for network inference. At the same time, this highlights the need for improved methods and better gold standards for regulatory network inference from scRNAseq datasets.

59 BASIC BIOLOGICAL SCIENCES↗

Using elliptical galaxy kinematics to compare the strength of gravity in cosmological regions of differing gravitational potential – a first look

ABSTRACT Various models of modified gravity invoke ‘screening’ mechanisms that are sensitive to the value of the local gravitational potential. This could have observable consequences for galaxies. These consequences might be seen by comparing two proxies for galaxy mass – their luminosity and their internal kinematics – as a function of local galaxy density. Motivated by this prospect, we have compared the observed properties of luminous red galaxies (LRGs) inside and outside of voids in the cosmic large scale structure. We used archival measurements of line widths, luminosities, redshifts, colours, and positions of galaxies in conjunction with recent void catalogues to construct comparison LRG samples inside and outside of voids. We fitted these two samples to the well-established fundamental plane of elliptical galaxies to constrain any differences between the inferred value of the Newtonian gravitational constant G for the two samples. We obtained a null result, with an upper limit on any fractional difference in G within and outside of cosmological voids to be α = δG/G ∼ 40 per cent. This upper bound is dominated by the small-number statistics of our N ∼ 100 within-void LRG sample. With the caveat that environmental effects could influence various parameters such as star formation, we estimate that a 1 per cent statistical limit on α could be attained with data from 105 elliptical galaxies within voids. This is within the reach of future photometric and spectroscopic surveys, both of which are required to pursue this method.

79 ASTRONOMY AND ASTROPHYSICS↗

Chirality reversal at finite magnetic impurity strength and local signatures of a topological phase transition

Here, we study the honeycomb lattice with a single magnetic impurity modeled by adding imaginary next-nearest-neighbor hopping 𝑖⁢ℎ on a single hexagon. This Haldane defect gives a topological mass term to the gapless Dirac cones and generates chirality. For a small density of defects, Neehus et al. [Phys. Rev. Lett. 135, 126604 (2025)] found that the system's chirality reverses at a critical ℎ 𝑐 ≈ 0.95 associated with an unexpected tricritical point of Dirac fermions at zero defect density. We investigate this zero-density limit by analyzing a single defect and computing two experimentally relevant measures of chirality: (1) orbital magnetization via local Chern marker, a bulk probe of all occupied states; and (2) electronic currents of low-energy states. Both probes show a chirality reversal at a critical ℎ 𝑐 ≈ 0.9–1.0. Motivated by this consistency, we propose a defect-scale toy model whose low-energy states reverse their chirality at ℎ$^{'}_{c}$ ≈ 0.87. Remarkably, the same pair of zero-energy bound states also generates the critical point ℎ 𝑐 in the full impurity projected T-matrix. Our results show how the chirality reversal produced by an impurity can be observed either in local probes or in the global topology, and suggest a possible role of the microscopic defect structure at the critical point.

Chern insulators↗

Quadrupole strength in isobaric triplets

The dependence of the 𝐸⁢2 matrix elements on isospin projection 𝑇 𝑧 is linked to the conservation of the isospin symmetry. To study this conjecture, we calculated the 𝐵⁡(𝐸⁢2 : 2 + →0 + ) rates for the even-even 𝑇=1 mirror nuclei with 42 ≤ 𝐴 ≤ 98 within nuclear density functional theory, employing the generalized Bohr Hamiltonian, and carrying out angular momentum projection. We demonstrated that collective effects are crucial for describing experimental data near the 𝑁=𝑍 line without invoking explicit beyond-Coulomb isospin symmetry-breaking corrections. We also determined the 𝐵⁡(𝐸⁢2↓) values for odd-odd 𝑇 𝑧 =0 nuclei 70 Br and 78 Y in doubly blocked configurations. We discussed the requirements for accurately describing isobaric analog states and emphasized how current theoretical results should be interpreted within the study of isospin symmetry across isospin triplets.

collective levels↗

Quenching of single-particle strengths in direct reactions

A discrepancy in the asymmetry dependence of spectroscopic factors extracted with different reaction probes calls into question whether the corresponding reaction models are properly understood. In this work, we present extracted spectroscopic factors from the Ar 46 , 34 ( p , d ) Ar 45 , 33 transfer reactions in inverse kinematics at a beam energy of 70 MeV/nucleon. The results are consistent with previous measurements of these reactions at a lower beam energy [Lee et al. , Phys. Rev. Lett. 104 , 112701 (2010) ], indicating that the transfer reaction is a reliable probe for the nuclear structure of exotic nuclei across a wide energy range. Results from a large body of transfer reaction measurements, ( p , p N ) measurements, and theoretical nuclear structure studies make a compelling case for much weaker asymmetry dependence than what is observed with single-nucleon knockout reactions on beryllium or carbon targets.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Revealing the strength of three-nucleon interactions with the proposed Einstein Telescope

Nuclear systems, ranging from atomic nuclei to dense matter probed in neutron stars, are governed by strong interactions. Three-nucleon forces have been found to be a crucial ingredient for the reliable description of these systems. Here, in this work, we explore how astrophysical data on neutron stars and their mergers from current and next-generation observatories will enable us to distinguish nuclear Hamiltonians. In particular, we investigate two different nuclear Hamiltonians that have been adjusted to reproduce two-nucleon scattering data and properties of light nuclei, but differ in the three-nucleon interactions among neutrons. We find that no significant constraints can be obtained from current data, but that the proposed Einstein Telescope could provide strong evidence to distinguish among these Hamiltonians.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗