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At least 631 records · Page 35
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

Genetic dissection of natural variation in oilseed traits of camelina by whole‐genome resequencing and QTL mapping

Abstract Camelina [ Camelina sativa (L.) Crantz] is an oilseed crop in the Brassicaceae family that is currently being developed as a source of bioenergy and healthy fatty acids. To facilitate modern breeding efforts through marker‐assisted selection and biotechnology, we evaluated genetic variation among a worldwide collection of 222 camelina accessions. We performed whole‐genome resequencing to obtain single nucleotide polymorphism (SNP) markers and to analyze genomic diversity. We also conducted phenotypic field evaluations in two consecutive seasons for variations in key agronomic traits related to oilseed production such as seed size, oil content (OC), fatty acid composition, and flowering time. We determined the population structure of the camelina accessions using 161,301 SNPs. Further, we identified quantitative trait loci (QTL) and candidate genes controlling the above field‐evaluated traits by genome‐wide association studies (GWAS) complemented with linkage mapping using a recombinant inbred line (RIL) population. Characterization of the natural variation at the genome and phenotypic levels provides valuable resources to camelina genetic studies and crop improvement. The QTL and candidate genes should assist in breeding of advanced camelina varieties that can be integrated into the cropping systems for the production of high yield of oils of desired fatty acid composition.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Genomic variation within the maize stiff-stalk heterotic germplasm pool

The stiff-stalk heterotic group in Maize (Zea mays L.) is an important source of inbreds used in U.S. commercial hybrid production. Founder inbreds B14, B37, B73, and, to a lesser extent, B84, are found in the pedigrees of a majority of commercial seed parent inbred lines. We created high-quality genome assemblies of B84 and four expired Plant Variety Protection (ex-PVP) lines LH145 representing B14, NKH8431 of mixed descent, PHB47 representing B37, and PHJ40, which is a Pioneer Hi-Bred International (PHI) early stiff-stalk type. Sequence was generated using long-read sequencing achieving highly contiguous assemblies of 2.13-2.18 Gbp with N50 scaffold lengths >200 Mbp. Inbred-specific gene annotations were generated using a core five-tissue gene expression atlas, whereas transposable element (TE) annotation was conducted using de novo and homology-directed methodologies. Compared with the reference inbred B73, synteny analyses revealed extensive collinearity across the five stiff-stalk genomes, although unique components of the maize pangenome were detected. Comparison of this set of stiff-stalk inbreds with the original Iowa Stiff Stalk Synthetic breeding population revealed that these inbreds represent only a proportion of variation in the original stiff-stalk pool and there are highly conserved haplotypes in released public and ex-Plant Variety Protection inbreds. Despite the reduction in variation from the original stiff-stalk population, substantial genetic and genomic variation was identified supporting the potential for continued breeding success in this pool. The assemblies described here represent stiff-stalk inbreds that have historical and commercial relevance and provide further insight into the emerging maize pangenome.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Lifting of two-mode states in the D1-D5 CFT

We consider D1-D5-P states in the untwisted sector of the D1-D5 orbifold CFT where one copy of the seed CFT has been excited by a pair of oscillators, each being either bosonic or fermionic. While such states are BPS at the orbifold point, they will in general ‘lift’ as the theory is deformed towards general values of the couplings. We compute the expectation value of this lift at second order in the deformation parameter for the above mentioned states. We write this lift in terms of a fixed number of nested contour integrals on a given integrand; this integrand depends on the mode numbers of the oscillators in the state. We evaluate these integrals to obtain the explicit value of the lift for various subfamilies of states. At large mode numbers one observes a smooth increase of the lift with the dimension of the state h; this increase appears to follow a ~ √h behavior similar to that found analytically in earlier computations for other classes of states.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2024

Lifting of superconformal descendants in the D1-D5 CFT

We consider D1-D5-P states in the untwisted sector of the D1-D5 orbifold CFT where we excite one copy of the seed CFT with a left-moving superconformal descendant. When the theory is deformed away from this region of moduli space these states can ‘lift’, despite being BPS at the orbifold point. For descendants formed from the supersymmetry $^{Gα}_{Å,–s}$ and R-symmetry $^{Ja}_{–n}$ current modes we obtain explicit results for the expectation value of the lifts for various subfamilies of states at second order in the deformation parameter. A smooth ~ √h behaviour is observed in the lifts of these subfamilies for large dimensions. Using covering space Ward identities we then find a compact expression for the lift of the above $^{Ja}_{–n}$ descendant states valid for arbitrary dimensions. In the large-dimension limit this lift scales as ~ √h, strengthening the conjecture that this is a universal property of the lift of D1-D5-P states. We observe that the lift is not simply a function of the total dimension, but depends on how the descendant level is partitioned amongst modes.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2021

T$ \overline{T} $ deformation in SCFTs and integrable supersymmetric theories

We calculate the \( \mathcal{S} \) -multiplets for two-dimensional Euclidean \( \mathcal{N} \) = (0 , 2) and \( \mathcal{N} \) = (2 , 2) superconformal field theories under the T \( \overline{T} \) deformation at leading order of perturbation theory in the deformation coupling. Then, from these \( \mathcal{N} \) = (0 , 2) deformed multiplets, we calculate two- and three-point correlators. We show the \( \mathcal{N} \) = (0 , 2) chiral ring’s elements do not flow under the T \( \overline{T} \) deformation. Specializing to integrable supersymmetric seed theories, such as \( \mathcal{N} \) = (2 , 2) Landau-Ginzburg models, we use the thermodynamic Bethe ansatz to study the S-matrices and ground state energies. From both an S-matrix perspective and Melzer’s folding prescription, we show that the deformed ground state energy obeys the inviscid Burgers’ equation. Finally, we show that several indices independent of D -term perturbations including the Witten index, Cecotti-Fendley-Intriligator-Vafa index and elliptic genus do not flow under the T \( \overline{T} \) deformation.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2024

PAIReD jet: A multi-pronged resonance tagging strategy across all Lorentz boosts

We propose a new approach of jet-based event reconstruction that aims to optimally exploit correlations between the products of a hadronic multi-pronged decay across all Lorentz boost regimes. The new approach utilizes clustered small-radius jets as seeds to define unconventional jets, referred to as PAIReD jets. The constituents of these jets are subsequently used as inputs to machine learning-based algorithms to identify the flavor content of the jet. We demonstrate that this approach achieves higher efficiencies in the reconstruction of signal events containing heavy-flavor jets compared to other event reconstruction strategies at all Lorentz boost regimes. Classifiers trained on PAIReD jets also have significantly better background rejections compared to those based on traditional event reconstruction approaches using small-radius jets at low Lorentz boost regimes. The combined effect of a higher signal reconstruction efficiency and better classification performance results in a two to four times stronger rejection of light-flavor jets compared to conventional strategies at low Lorentz-boosts, and rejection rates similar to classifiers based on large-radius multi-pronged jets at high Lorentz-boost regimes.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2022

Universal lifting in the D1-D5 CFT

We consider D1-D5-P states in the untwisted sector of the D1-D5 orbifold CFT where one copy of the seed CFT has been excited with a left-moving superconformal primary. Despite being BPS at the orbifold point, such states can ‘lift’ as the theory is deformed away from this point in moduli space. We compute this lifting at second order in the deformation parameter for arbitrary left-moving dimension h of this class of states. This result displays an interesting universality since the lifting does not depend on the details of the superconformal primary; it depends only on the dimension. In the large-dimension limit the lift scales as $\sqrt{h}$; it is observed that such scaling appears to be a universal property of the lift of D1-D5-P states.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2023

Transport across interfaces in symmetric orbifolds

We examine how conformal boundaries encode energy transport coefficients — namely transmission and reflection probabilities — of corresponding conformal interfaces in symmetric orbifold theories. These constitute a large class of irrational theories and are closely related to holographic setups. Our central goal is to compare such coefficients at the orbifold point (a field theory calculation) against their values when the orbifold is highly deformed (a gravity calculation) — an approach akin to past AdS/CFT-guided comparisons of physical quantities at strong versus weak coupling. At the orbifold point, we find that the (weighted-average) transport coefficients are simply averages of coefficients in the underlying seed theory. We then focus on the symmetric orbifold of the T 4 sigma model interface CFT dual to type IIB supergravity on the 3d Janus solution. We compare the holographic transmission coefficient, which was found by [1], to that of the orbifold point. We find that the profile of the transmission coefficient substantially increases with the coupling, in contrast to boundary entropy. We also present some related ideas about twisted-sector data encoded by boundary states.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2025

Identification of a QTL region for tomato brown rugose fruit virus resistance in Solanum pimpinellifolium

Abstract Tomato (Solanum lycopersicumL.), one of the most widely grown vegetables in the world, has been seriously impacted in the past decade by the emerging tomato brown rugose fruit virus (ToBRFV). ToBRFV is a seed-borne tobamovirus, with ability to overcome the commonly usedTm-2 2 resistance gene in tomato. The objective of this study was to conduct quantitative trait locus (QTL) mapping and identify single-nucleotide polymorphism (SNP) markers associated with ToBRFV resistance in tomato. Two F 2 populations were used for QTL mapping: One derived from a cross betweenS. pimpinellifoliumUSVL333 (PI 390718) × USVL332 (PI 390717) and another from ‘Moneymaker’ × USVL332 (PI 390717), with population sizes of 195 and 79 plants, respectively. The resistance trait was derived from theS. pimpinellifoliumaccession USVL332 (PI 390717). A major QTL for ToBRFV resistance was identified on chromosome 11 (SL4.0ch11), with the peak located at approximately 46.84 Mbp. This QTL spans a 22-kb interval between 46,825,788 bp and 46,847,421 bp, as determined through both genome-wide association study (GWAS) and QTL linkage mapping. Three SNP markers, SL4.0ch11_46825788, SL4.0ch11_46847421, and SL4.0ch11_46850215, demonstrated the most significant association with high LOD values (LOD = 13 in the Blink model) in GWAS analysis. In this genomic region, two disease resistance gene analogs, Solyc11g062150 (TIR-NBS-LRR resistance protein, Toll-Interleukin receptor) and Solyc11g062180 (disease resistance protein, leucine-rich repeat), were identified, which may serve as candidates for ToBRFV resistance. The QTL identified in this study could be valuable for plant breeders in facilitating tomato breeding with ToBRFV resistance.

Agriculture↗
DOE OSTI2025

Microbial Enrichments Contribute to Characterization Of Desert Tortoise Gut Microbiota

Abstract Desert tortoises play ecologically significant roles, including plant seed dispersal and mineral cycling, and yet little is known about microbial members that are critical to their gut and overall health. Tortoises consume recalcitrant plant material, which their gut microbiota degrades and converts into usable metabolites and nutrients for the tortoise. Findings from tortoise gut microbiomes may translate well into biotechnological applications as these microbes have evolved to efficiently degrade recalcitrant substrates and generate useful products. In this study, we cultivated microbial communities from desert tortoise fecal samples following a targeted anaerobic enrichment for microbes involved in deconstruction and utilization of plant biomass. We employed 16S rRNA amplicon sequencing to compare cultivated communities to initial fecal source material and found high abundances of Firmicutes and Bacteroidota typically associated with biomass deconstruction in all cultivated samples. Significantly decreased microbial diversity was observed in the cultivated microbial communities, yet several key taxa thrived in lignocellulose enrichments, includingLachnospiraceaeandEnterococcus. Additionally, cultivated communities produced short-chain fatty acids under anaerobic conditions, and their growth and metabolic output provide evidence of their viability in the initial fecal communities. Overall, this study adds to the limited understanding of reptilian herbivore microbiota, and offers a path towards biotechnological translation based on the ability of the cultivated communities to convert lignocellulose directly to acetate, propionate, and butyrate.

Environmental Sciences & Ecology↗
DOE OSTI2021

Regulation of dhurrin pathway gene expression during Sorghum bicolor development

Plant defence models evaluate the costs and benefits of resource investments at different stages in the life cycle. Poor understanding of the molecular regulation of defence deployment and remobilization hampers accuracy of the predictions. Cyanogenic glucosides, such as dhurrin are phytoanticipins that release hydrogen cyanide upon bio-activation. In this study, RNA-seq was used to investigate the expression of genes involved in the biosynthesis, bio-activation and recycling of dhurrin in Sorghum bicolor . Genes involved in dhurrin biosynthesis were highly expressed in all young developing vegetative tissues (leaves, leaf sheath, roots, stems), tiller buds and imbibing seeds and showed gene specific peaks of expression in leaves during diel cycles. Genes involved in dhurrin bio-activation were expressed early in organ development with organ-specific expression patterns. Genes involved in recycling were expressed at similar levels in the different organ during development, although post-floral initiation when nutrients are remobilized for grain filling, expression of GSTL1 decreased > tenfold in leaves and NITB2 increased > tenfold in stems. Results are consistent with the establishment of a pre-emptive defence in young tissues and regulated recycling related to organ senescence and increased demand for nitrogen during grain filling. This detailed characterization of the transcriptional regulation of dhurrin biosynthesis, bioactivation and remobilization genes during organ and plant development will aid elucidation of gene regulatory networks and signalling pathways that modulate gene expression and dhurrin levels. In-depth knowledge of dhurrin metabolism could improve the yield, nitrogen use efficiency and stress resilience of Sorghum .

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

The SEEL motif and members of the MYB-related REVEILLE transcription factor family are important for the expression of LORELEI in the synergid cells of the Arabidopsis female gametophyte

Synergid cells in the micropylar end of the female gametophyte are required for critical cell–cell signaling interactions between the pollen tube and the ovule that precede double fertilization and seed formation in flowering plants. LORELEI (LRE) encodes a putative GPI-anchored protein that is expressed primarily in the synergid cells, and together with FERONIA, a receptor-like kinase, it controls pollen tube reception by the receptive synergid cell. Still, how LRE expression is controlled in synergid cells remains poorly characterized. We identified candidate cis-regulatory elements enriched in LRE and other synergid cell-expressed genes. One of the candidate motifs (‘TAATATCT’) in the LRE promoter was an uncharacterized variant of the Evening Element motif that we named as the Short Evening Element-like (SEEL) motif. Deletion or point mutations in the SEEL motif of the LRE promoter resulted in decreased reporter expression in synergid cells, demonstrating that the SEEL motif is important for expression of LRE in synergid cells. Additionally, we found that LRE expression is decreased in the loss of function mutants of REVEILLE (RVE) transcription factors, which are clock genes known to bind the SEEL and other closely related motifs. Here, we propose that RVE transcription factors regulate LRE expression in synergid cells by binding to the SEEL motif in the LRE promoter. Identification of cis-regulatory elements and transcription factors involved in the expression of LRE will serve as a foundation to characterize the gene regulatory networks in synergid cells.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Effects of wind field characteristics on pitch bearing reliability: a case study of 5 MW reference wind turbine at onshore and offshore sites; Auswirkungen von Windfeldeigenschaften auf die Zuverlässigkeit von Rotorblattlagern: eine Fallstudie über eine 5-MW-Referenz-Windkraftanlage an Onshore- und Offshore-Standorten

This paper presents a study on pitch bearing basic rating life affected by wind field characteristics at both onshore and offshore wind sites. The National Renewable Energy Laboratory 5 MW reference wind turbine is selected for the study. Wind field characteristics including reference hub height mean wind speed, wind speed distribution, wind shear, and vertical inflow are studied. A decoupled approach is employed where global analysis is performed first. Second, the load effects from the global analysis are applied on a reference pitch bearing designed based on best industrial practices. For the case study onshore site, it is found that the Kernel density estimation best fits the wind distribution, while the International Electrotechnical Commission proposed distribution appears to be not suitable. Moreover, it is shown that the seed number has high effect on the bearing life in turbulence wind and the wind speeds around rated have the highest contribution in both bearing fatigue damage and extreme load failure. The results contribute to better understanding of the wind field characteristics on the pitch bearing life.

17 WIND ENERGY↗
DOE OSTI2020

ELM Suppression by Boron Powder Injection and Comparison with Lithium Powder Injection on EAST

Type I edge-localized modes (ELMs) in the Experimental Advanced Superconducting Tokamak (EAST) were completely suppressed via boron powder injection into the X-point region of an upper-single null configuration over a wide range of operating conditions (2.8 < P aux < 7.5 MW, 3.8 × 10 19 < n e < 6 × 10 19 m -3 , RF-only and RF + NBI heating scenarios, both grad-B drift directions, and even He ion majority plasmas) (Sun et al. in Nucl. Fusion, 2020). A window of edge B concentration for stable long pulse operation was identified: too low and ELMs return, too high and the discharge suffers radiative collapse. The injection of boron powder above the minimum for ELM suppression coincided with the occurrence of an edge harmonic oscillation detected in magnetics (both on the high-field side and low-field side), in AXUV diodes near the upper X-point, divertor Dα emission, and in a range of other diagnostics (Diallo et al. in: Proceedings of 2020 IAEA fusion energy conference, 2021). Furthermore, no harmonic oscillation was observed when ELMs were present, and stored energy was slightly increased at constant density during ELM suppression. Core tungsten emission during ELM suppression either increased or decreased relative to ELMy H-mode, but the W emission was maintained at acceptable levels. The threshold B injection rate was measured for several conditions, and found to increase with heating power. Li powder injection into comparable discharges also resulted in a short phase of ELM suppression, but density and stored energy both decreased due to the strong pumping effect of lithium; no edge harmonic oscillation was observed with Li injection, indicating that the ELM suppression mechanisms differ. The new set of B-seeded, ELM-suppressed discharges exhibited certain characteristics of quiescent H-mode (Burrell et al. in Phys Plasmas 8:2153, 2001), but did not require high shear, counter beams, etc. The wide operating window and compatibility with RF-only discharges paves the way for future experiments targeting long pulse H-mode discharges with complete ELM suppression.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2022

The Magnetized Indirect Drive Project on the National Ignition Facility

A new project is underway at the National Ignition Facility with the goal of applying a seed magnetic field to the fusion fuel in an indirect drive hohlraum implosion and quantifying the effect on the hot-spot temperature, shape and neutron yield. Magnetizing fusion fuel is calculated to reduce heat loss from the implosion core by constraining the motion of electrons and fusion-generated alpha particles; this can improve the chances of achieving high-gain fusion in a laboratory plasma. Here, we describe the goals of this project and the significant scientific and technological challenges which must be overcome for this project to succeed.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2022

Devices for Thermal Conductivity Measurements of Electroplated Bi for X-ray TES Absorbers

Electroplated bismuth (Bi) is commonly used in transition-edge sensors (TESs) for X-rays because of its high stopping power and low heat capacity (Collan in Phys Rev B 1:2888, 1970, Yan in Appl Phys Lett 111:192602, 2017). Electroplated Bi is usually grown on top of another metal that acts as seed layer, typically gold (Au), making it challenging to extrapolate its thermoelectric properties. In this work, we present four-wire resistance measurement structures that allow us to measure resistance as a function of temperature of electroplated Bi independently of Au. The results show that the thermal conductivity of the Bi at 3 K is high enough to ensure the correct thermalization of X-ray photons when used as an absorber for TESs.

Bismuth↗
DOE OSTI2023

Strigolactones: diversity, perception, and hydrolysis

Abstract Strigolactones (SLs) are a unique and novel class of phytohormones that regulate numerous processes of growth and development in plants. Besides their endogenous functions as hormones, SLs are exuded by plant roots to stimulate critical interactions with symbiotic fungi but can also be exploited by parasitic plants to trigger their seed germination. In the past decade, since their discovery as phytohormones, rapid progress has been made in understanding the SL biosynthesis and signaling pathway. Of particular interest are the diversification of natural SLs and their exact mode of perception, selectivity, and hydrolysis by their dedicated receptors in plants. Here we provide an overview of the emerging field of SL perception with a focus on the diversity of canonical, non-canonical, and synthetic SL probes. Moreover, this review offers useful structural insights into SL perception, the precise molecular adaptations that define receptor-ligand specificities, and the mechanisms of SL hydrolysis and its attenuation by downstream signaling components.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Primordial black hole mass functions as a probe of cosmic origin

Here, we discuss a novel window to probe the origin of our universe via the mass functions of primordial black holes (PBHs). The mass functions of PBHs are simply estimated using the conventional Press-Schechter formalism for two paradigms of cosmic origin, including inflationary ΛCDM and bounce cosmology. The standard inflationary ΛCDM model cannot generate an appreciable number of massive PBHs; however, non-trivial inflation models with blue-tilted power spectra at small scales and matter bounce cosmology provide formation mechanisms for heavy PBHs, which in turn, may seed the observed supermassive black holes (SMBHs). By fitting the SMBH mass functions at high redshift (z ~ 6) derived from Sloan Digital Sky Survey (SDSS) and Canada-France High-z Quasar Survey (CFHQS) quasars, for two paradigms of cosmic origin, we derive constraints on the PBH density fraction $f$ PBH at z ~ 6 and the characteristic mass M $\ast$ , with the prior assumption that all SMBHs stem from PBHs. We demonstrate that this newly proposed procedure, relying on astronomical measurements that utilize deep-field surveys of SMBHs at high redshift, can be used to constrain models of cosmic origin. Additionally, although not the main focus of this paper, we evolve the mass function from z ~ 6 to z ~ 0 through an assumption of 3 × 10 8 -year Eddington’s accretion, and give a rough estimation of $f$ PBH at z ~ 0.

79 ASTRONOMY AND ASTROPHYSICS↗