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A Pipeline for Assessing the Quality of Rna-Seq Datasets in GeneLab
Transcriptome profiling by RNA sequencing (RNA-seq) is a powerful approach to identify gene expression changes in organisms exposed to unique environments such as spaceflight. One of the challenges of evaluating RNA-seq data both within and across different space-relevant studies is the ability to control for technical differences, including the use of different library preparation kits, sequencing platforms, RNA yield, and person-to-person variation. To help address this issue, the National Institute of Standards and Technology (NIST, nist.gov) initiated a consortium, at the request of industry and academia, to develop a set of controls for gene expression measurements. The result was a set of 92 unlabeled, polyadenylated transcripts that range from 250 – 2,000 nucleotides in length to mimic natural eukaryotic mRNAs. These External RNA Controls Consortium (ERCC) genes can be used in any RNA-seq experiment, by adding known concentrations of the ERCC genes to samples after RNA extraction, to offer a standard measurement for data comparison. At NASA GeneLab, we employ these controls as part of our standard operating procedures for every in-house RNA-seq study to assess the limit of detection, dynamic range, and power of differential expression analysis both within and across experiments. Here we will discuss the use, benefits, and limitations of ERCC genes and other types of controls, such as universal RNA references, to generate quality control information for RNA-seq studies conducted at GeneLab.
Digital Elevation Map Parametric Error Analysis Pipeline using Corresponding NAC Images
Future lunar landing systems, particularly those used to land humans on the lunar surface as part of the ARTEMIS program, will require precision navigation relative to the lunar surface. The most common way to meet these stringent navigation requirements is through terrain relative navigation (TRN), which localizes a spacecraft by comparing descent imagery with a predefined map of the surface. The accuracy achievable using TRN is limited by the accuracy of the reference Digital Elevation Map (DEM). It is therefore critical for future lunar missions that potential errors in DEMs be quantified. This paper describes one of NASA’s current efforts to develop a process for evaluating lunar DEM quality.
Progress in Reprocessing the Hyperion/EO-1 Data Set with a Prototype Pipeline for SBG
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Ziggy, A Portable, Scalable Infrastructure for Science Data Processing Pipelines and Its Application to A Proxy, Legacy Global Hyperspectral Data Set for NASA's Earth System Observatory’s Upcoming Surface, Biology and Geology Mission
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Automated Downlink Pipeline for Scientific Data Using TReK
ISS users generate scientific data files on orbit that require console operators to retrieve and deliver them for analysis. Automating the downlink process using TReK CFDP and DTN provides ground flight controllers and PD teams increased efficiency, reducing workload and resulting in cost savings without reduced services provided.
Data Analysis Pipeline Management With Ziggy
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The High-End Computing Capability and Ziggy: A Flexible, Scalable Science Pipeline Manager
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The Trials and Tribulations of Developing Science Pipelines for NASA Flight Missions
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Ring Diagram Analysis of Synthetic SDO/HMI Pipeline Dopplergrams Based on Realistic 3D Simulations of the Sun
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Low-cost real-time aerial object detection and GPS location tracking pipeline
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Technical STEM Workforce Development Re-Imagined: The Lucy Student Pipeline and Competency Enabler (L’SPACE)
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High precision meteor observations with the Canadian automated meteor observatory: Data reduction pipeline and application to meteoroid mechanical strength measurements
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Satellite interferometry for regional assessment of landslide hazard to pipelines in northeastern British Columbia, Canada
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cecilia : a machine learning-based pipeline for measuring metal abundances of helium-rich polluted white dwarfs
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LoVoCCS. I. Survey Introduction, Data Processing Pipeline, and Early Science Results
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An automated bolide detection pipeline for GOES GLM
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