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At least 631 records · Page 35

So You Want to Go to Mars: Bones and Matters of the Heart

There is evidence that weightlessness and radiation, two elements of the spaceflight environment, can lead to detrimental changes in human musculoskeletal tissue, including bone loss and muscle atrophy. This bone loss is thought to be brought about by the increased activity of bone-resorbing osteoclasts and functional changes in bone-forming osteoblasts, cells that give rise to mature osteocytes. Collectively, our research team aims to understand the molecular mechanisms underlying the responses of mammalian tissue to the spaceflight environment using earth-based animal and cellular models. The overarching goal is to identify molecular targets to prevent tissue decrements induced by spaceflight and earth-based scenarios of radiotherapy, accidental radiation exposure and reduced mobility. In this talk, I will provide an overview of skeletal and cardiovascular responses to spaceflight and will highlight our research progress on understanding the role of reactive oxygen species (ROS) signaling in skeletal responses to radiation and simulated weightlessness.

heart↗

Room-temperature Broadening and Pressure-shift Coefficients in the nu(exp 2) Band of CH3D-O2: Measurements and Semi-classical Calculations

We report measured Lorentz O2-broadening and O2-induced pressure-shift coefficients of CH3D in the nu(exp 2) fundamental band. Using a multispectrum fitting technique we have analyzed 11 laboratory absorption spectra recorded at 0.011 cm(exp 1) resolution using the McMath-Pierce Fourier transform spectrometer, Kitt Peak, Arizona. Two absorption cells with path lengths of 10.2 and 25 cm were used to record the spectra. The total sample pressures ranged from 0.98 to 339.85 Torr with CH3D volume mixing ratios of 0.012 in oxygen. We report measurements for O2 pressure-broadening coefficients of 320 nu(exp 2) transitions with quantum numbers as high as J0(sup w) = 17 and K = 14, where K(sup w) = K' is equivalent to K (for a parallel band). The measured O2-broadening coefficients range from 0.0153 to 0.0645 cm(exp -1) atm(exp -1) at 296 K. All the measured pressure-shifts are negative. The reported O2-induced pressure-shift coefficients vary from about -0.0017 to -0.0068 cm(exp -1) atm(exp -1). We have examined the dependence of the measured broadening and shift parameters on the J(sup W), and K quantum numbers and also developed empirical expressions to describe the broadening coefficients in terms of m (m = -J(sup W), J(sup W), and J(sup w) + 1 in the QP-, QQ-, and QR-branch, respectively) and K. On average, the empirical expressions reproduce the measured broadening coefficients to within 4.4%. The O2-broadening and pressure shift coefficients were calculated on the basis of a semiclassical model of interacting linear molecules performed by considering in addition to the electrostatic contributions the atom-atom Lennard-Jones potential. The theoretical results of the broadening coefficients are generally larger than the experimental data. Using for the trajectory model an isotropic Lennard-Jones potential derived from molecular parameters instead of the spherical average of the atom-atom model, a better agreement is obtained with these data, especially for |m| <= 12 values (11.3% for the first calculation and 8.1% for the second calculation). The O2-pressure shifts whose vibrational contribution are either derived from parameters fitted in the QQ-branch of selfinduced shifts of CH3D or those obtained from pressure shifts induced by Xe in the nu(sup 3) band of CH3D are in reasonable agreement with the scattered experimental data (17.0% for the first calculation and 18.7% for the second calculation).

Predoi-Cross, Adriana↗

Dynamic upper atmospheric force model on stabilized vehicles for a high-precision trajectory computer program

The upper atmosphere model draws heavily on the behavior of the earth's upper atmosphere which exhibits cyclic as well as irregular variations in density profile, temperature, pressure, and composition in unison with solar activities as deduced from the more recent land-based and satellite observations. The lift and drag model is designed specifically for inertially stabilized vehicles of the Mariner class, with possible extension to gravity gradient stabilized vehicles of the GEOS class. The model considers operation in the free molecular flow regimes with large Knudsen numbers. The vehicle is considered a composite structure with basic components having well-defined shapes, each with its own surface characteristics in terms of temperature, reflectivity, and accommodation of free stream molecules. The model takes into account both the calculation of precise aerodynamic force coefficients in terms of expansion of modified Bessel functions in speed ratios and angle of attack, and approximate force coefficients when the speed ratios approach infinity. Other considerations include specular and diffused reflectivity, shielding, and shadow effects.

Khatib, A. R.↗

The structure of W49 A as deduced from molecular and recombination line observations

The molecular cloud complex W49 A has been observed in the 2.6-mm CO line, the 2-cm H2CO line, and the H76-alpha recombination line. These observations are most consistent with a picture of the complex in which a large H II region lies between two massive molecular clouds. Using a simple hydrodynamic model coupled with calculations of radiative transfer in the recombination lines, it is found that many of the spectral-line and continuum observations obtained on this region can be naturally explained, including: (1) the multiple structure observed in the molecular lines and the single structure in the recombination lines; (2) the local standard of rest (LSR) velocities of both the molecular and recombination lines; (3) the velocity gradients observed in the lines; (4) the continuum emission from the H II region; and (5) the line widths and line-to-continuum ratios of the recombination lines.

Mufson, S. L.↗

Spatial variation of the physical conditions of molecular gas in galaxies

Multi-line studies of CO-12, CO-13, C-18O, HCN, and HCO(+) at 3 mm, 1.3 mm, and 0.8 mm using the Institute for Radio Astronomy in the Millimeter range (IRAM) 30 m telescope, with the IRAM superconductor insulator superconductor (SIS) receivers and the Max Planck Institute for External Physics (MPE) 350 GHz SIS receiver, show that the densities and temperatures of molecular gas in external galaxies change significantly with position. CO-12 measures the densities and temperature of diffuse interclump molecular gas, but not the bulk of the molecular gas. Simple one-component models, with or without external heating, cannot account for the weakness of the CO-12 J = 3 to 2 line relative to J = 2 to 1 and J = 1 to 0. CO-12 does not trace the bulk of the molecular gas, and optical depth effects obviate a straightforward interpretation of CO-12 data. Instead, researchers turned to the optically thin CO isotopes and other molecular species. Isotopic CO lines measure the bulk of the molecular gas, and HCN and HCO(+) pick out denser regions. Researchers find a warm ridge of gas in IC 342 (Eckart et al. 1989), denser gas in the starburst nucleus of IC 342, and a possible hot-spot in NGC 2903. In IC 342, NGC 2146, and NGC 6764, the CO-13 J = 2 to 1 line is subthermally populated, implying gas densities less than or equal to 10(exp 4) cm(-3).

Jackson, James M.↗

A natural view of microbial biodiversity within hot spring cyanobacterial mat communities

This review summarizes a decade of research in which we have used molecular methods, in conjunction with more traditional approaches, to study hot spring cyanobacterial mats as models for understanding principles of microbial community ecology. Molecular methods reveal that the composition of these communities is grossly oversimplified by microscopic and cultivation methods. For example, none of 31 unique 16S rRNA sequences detected in the Octopus Spring mat, Yellowstone National Park, matches that of any prokaryote previously cultivated from geothermal systems; 11 are contributed by genetically diverse cyanobacteria, even though a single cyanobacterial species was suspected based on morphologic and culture analysis. By studying the basis for the incongruity between culture and molecular samplings of community composition, we are beginning to cultivate isolates whose 16S rRNA sequences are readily detected. By placing the genetic diversity detected in context with the well-defined natural environmental gradients typical of hot spring mat systems, the relationship between gene and species diversity is clarified and ecological patterns of species occurrence emerge. By combining these ecological patterns with the evolutionary patterns inherently revealed by phylogenetic analysis of gene sequence data, we find that it may be possible to understand microbial biodiversity within these systems by using principles similar to those developed by evolutionary ecologists to understand biodiversity of larger species. We hope that such an approach guides microbial ecologists to a more realistic and predictive understanding of microbial species occurrence and responsiveness in both natural and disturbed habitats.

Review↗

Three-dimensional Myoblast Aggregates--Effects of Modeled Microgravity

The overall objective of these studies is to elucidate the molecular and cellular alterations that contribute to muscle atrophy in astronauts caused by exposure to microgravity conditions in space. To accomplish this, a three-dimensional model test system was developed using mouse myoblast cells (C2C12). Myoblast cells were grown as three-dimensional aggregates (without scaffolding or other solid support structures) in both modeled microgravity (Rotary Cell Culture System, Synthecon, Inc.) and at unit gravity in coated Petri dishes. Evaluation of H&E stained thin sections of the aggregates revealed the absence of any necrosis. Confocal microscopy evaluations of cells stained with the Live/Dead assay (Molecular Probes) confirmed that viable cells were present throughout the aggregates with an average of only three dead cells observed per aggregate. Preliminary results from gene array analysis (Affymetrix chip U74Av2) showed that approximately 14% of the genes were down regulated (decreased more than 3 fold) and 4% were upregulated in cells exposed to modeled microgravity for 12 hours compared to unit gravity controls. Additional studies using fluorescent phallacidin revealed a decrease in F-actin in the cells exposed to modeled microgravity compared to unit gravity. Myoblast cells grown as aggregates in modeled microgravity exhibited spontaneous differentiation into syncitia while no differentiation was seen in the unit gravity controls. These studies show that 1)the model test system developed is suitable for assessing cellular and molecular alterations in myoblasts; 2) gene expression alterations occur rapidly (within 12 hours) following exposure to modeled microgravity; and 3) modeled microgravity conditions stimulated myoblast cell differentiation. Achieving a greater understanding of the molecular alterations leading to muscle atrophy will eventually enable the development of cell-based countermeasures, which may be valuable for treatment of muscle diseases on Earth and future space explorations.

Byerly, Diane↗

Comparisons of measured and theoretical thermospheric daily composition variations

A comparison of the diurnal component of the daily variation in the neutral composition data from the San Marco 3 Nace (Neutral Atmospheric Composition Experiment) mass spectrometer at 220, 250, and 280 km, the OGO-6 model data at 450 km, rocket measurements of nitrogen between 140 and 300 km, and the two-constituent theoretical model of Mayr and Volland (1973) gives good agreement for molecular nitrogen and atomic oxygen. The Nace and rocket measurements overlap in altitude, and there is good agreement in the amplitude and phase of the diurnal and semidiurnal components for molecular nitrogen. The helium diurnal amplitude and phase of the theoretical model are in fair agreement with the Nace results, while the amplitude from the OGO-6 model at 450 km is much larger than the model predicts, a result suggesting that the OGO-6 model diurnal amplitude may be overestimated as the result of an incomplete separation of local-time and seasonal effects.

Kasprzak, W. T.↗

Computer simulation of surface and film processes

All the investigations which were performed employed in one way or another a computer simulation technique based on atomistic level considerations. In general, three types of simulation methods were used for modeling systems with discrete particles that interact via well defined potential functions: molecular dynamics (a general method for solving the classical equations of motion of a model system); Monte Carlo (the use of Markov chain ensemble averaging technique to model equilibrium properties of a system); and molecular statics (provides properties of a system at T = 0 K). The effects of three-body forces on the vibrational frequencies of triatomic cluster were investigated. The multilayer relaxation phenomena for low index planes of an fcc crystal was analyzed also as a function of the three-body interactions. Various surface properties for Si and SiC system were calculated. Results obtained from static simulation calculations for slip formation were presented. The more elaborate molecular dynamics calculations on the propagation of cracks in two-dimensional systems were outlined.

Tiller, W. A.↗

Thermal and humidity winds in outer planet atmospheres

Among the dynamical consequences of molecular weight variations due to condensation in hydrogen atmospheres is the creation of geostrophic wind variations by horizontal variations in molecular weight. In the present illustrative model, it is shown that such horizontal gradients are generated by methane condensation in the cases of the Uranus and Neptune atmospheres. As a result, the zonal wind shear is different in both magnitude and direction from the value determined while neglecting molecular weight variations. The horizontal molecular weight gradients due to condensation of minor constituents also vertically shear the zonal wind, giving rise to what may be termed the 'humidity wind'.

Sun, Zi-Ping↗

Far-infrared, submillimeter, and millimeter spectroscopy of the Galactic center - Radio ARC and +20/+50 kilometer per second clouds

Results are presented from FIR, sub-mm, and mm spectroscopic observations of the radio arc and the +20/+50 km/s molecular clouds in the Galactic center. The results for the radio arc are analyzed, including the spatial distribution of C II forbidden line emission, the spatial distribution of CO emission, the luminosity and mass of C(+) regions, and the CO 7 - 6 emission and line profiles. Model calculations are used to study molecular gas in the radio arc. In addition, forbidden C II, CO 7 - 6, and C(O-18) mapping is presented for the +20/+50 km/x clouds. Consideration is given to the impact of the results on the interpretation of the physical conditions, excitation, and heating of the gas clouds in the arc and near the center.

Genzel, R.↗

(abstract) Modeling Protein Families and Human Genes: Hidden Markov Models and a Little Beyond

We will first give a brief overview of Hidden Markov Models (HMMs) and their use in Computational Molecular Biology. In particular, we will describe a detailed application of HMMs to the G-Protein-Coupled-Receptor Superfamily. We will also describe a number of analytical results on HMMs that can be used in discrimination tests and database mining. We will then discuss the limitations of HMMs and some new directions of research. We will conclude with some recent results on the application of HMMs to human gene modeling and parsing.

Hidden Markov Models HMMs proteins computational m↗

Nonequilibrium Stagnation-Line Radiative Heating for Fire II

This paper presents a detailed analysis of the shock-layer radiative heating to the Fire II vehicle using a new air radiation model and a viscous shock-layer flowfield model. This new air radiation model contains the most up-to-date properties for modeling the atomic-line, atomic photoionization, molecular band, and non-Boltzmann processes. The applied viscous shock-layer flowfield analysis contains the same thermophysical properties and nonequilibrium models as the LAURA Navier-Stokes code. Radiation-flowfield coupling, or radiation cooling, is accounted for in detail in this study. It is shown to reduce the radiative heating by about 30% for the peak radiative heating points, while reducing the convective heating only slightly. A detailed review of past Fire II radiative heating studies is presented. It is observed that the scatter in the radiation predicted by these past studies is mostly a result of the different flowfield chemistry models and the treatment of the electronic state populations. The present predictions provide, on average throughout the trajectory, a better comparison with Fire II flight data than any previous study. The magnitude of the vacuum ultraviolet (VUV) contribution to the radiative flux is estimated from the calorimeter measurements. This is achieved using the radiometer measurements and the predicted convective heating. The VUV radiation predicted by the present model agrees well with the VUV contribution inferred from the Fire II calorimeter measurement, although only when radiation-flowfield coupling is accounted for. This agreement provides evidence that the present model accurately models the VUV radiation, which is shown to contribute significantly to the Fire II radiative heating.

Johnston, Christopher O.↗

Observations and interpretation of the line profiles of excited H2 in Orion

The profiles of the V=1-0 S(1) line of H2 in the Orion molecular cloud show a variation from the center of the emission region where the profiles are broad and have extended blue wings, to the periphery where the profiles are narrow and have a peak at the velocity of the molecular cloud. These observations can be understood by a model of a radially expanding supersonic flow of gas colliding with the surrounding molecular cloud. It is concluded that the high velocity emission originates in the flow and the low velocity emission originates in the molecular cloud. Density variations in the flow and the surrounding cloud are necessary to explain the detailed line profiles and morphology.

Geballe, T. R.↗

The use of transition heights for the representation of ion composition

Several characteristic transition heights can be found in ionospheric ion-composition profiles. These are the boundaries between the regions dominated by light ions, atomic oxygen ions, molecular ions, and cluster ions, respectively. Ion-composition modeling can benefit from the use of these transition heights. Special emphasis is given to the 'upper' transition height H sub T (light ions to atomic oxygen) and to the 'lower' transition height h sub t (atomic oxygen to molecular ions). Transition-height models deduced from rocket and satellite measurements are compared with the heights predicted by the International Reference Ionosphere. Considerable discrepancies are found between the different models as well as between the models and independent measurements.

Bilitza, Dieter↗