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At least 631 records · Page 35
All sourcesNASA NTRSDOE OSTI
NASA NTRS1994

Erosional dynamics, flexural isostasy, and long-lived escarpments: A numerical modeling study

Erosional escarpments common features of high-elevation rifted continets. Fission track data suffest that these escarpments form by base level lowering and/or marginal uplift during rifting, followed by lateral retreat of an erosion front across tens to hundreds of kioometers. Previous modeling studies have shown that this characteristic pattern of denudation can have a profound impact upon marginal isostatic uplift and the evolution of offshore sedimentary basins. Yet at present there is only a rudimentary understanding of the geomorphic mechanisms capable of driving such prolonged escarpment retreat. In this study we present a nonlinear, two-dimensional landscape evolution model tha tis used to asses the necessary and sufficient conditions for long-term retreat of a rift-generated escarpment. The model represents topography as a grid of cells, with drainage networkds evolving as water flows across the grid in the direction of steepest descent. The model accounts for sediment production by weathering, fluvial sediment transport, bedrock channel erosion, and hillslope sediment transport by diffusive mechanisms and by mass failure. Numerical experiments presented explore the effects of different combinations of erosion processes and of dynamic coupling between denudation and flexural isostatic uplift. Model results suggest that the necessary and sufficient conditions for long-term escarpment retreat are (1) incising bedrock channels in which the erosion rate increases with increasing drainage area, so that the channels steepen and propagate headward; (2) a low rate of sediment production relative to sediment transport efficiency, which promotes relief-generating processes over diffusive ones; (3) high continental elevation, which allows greater freedom for fluvial dissection; and (4) any process, including flexural isostatic uplift, that helps to maintain a drainage divide near an escarpment crest. Flexural isostatic uplift also facilitates escarpment, thereby increasing channel gradients and accelerating erosion which in turn generates additional isostatic uplift. Of all the above conditions, high continental elevation is common ot most rift margin escarpments and may ultimately be the most important factor.

Tucker, Gregory E.↗
DOE OSTI2025

3D pattern formation of a protein–membrane suspension

Many essential cellular processes, including cell division and the establishment of cell polarity during embryogenesis, are regulated by pattern-forming proteins. These proteins often need to bind to a substrate, such as the cell membrane, onto which they interact and form two-dimensional (2D) patterns. It is unclear how the membrane’s continuity and dimensionality impact pattern formation. Here, we address this gap using the MinDE system, a prototypical example of pattern-forming membrane proteins. We show that when the lipid substrate is fragmented into submicrometer-sized diffusive liposomes, adenosine triphosphate-driven protein–protein interactions generate three-dimensional (3D) spatially extended patterns, despite the complete loss of membrane continuity. Remarkably, these 3D patterns emerge at scales four orders of magnitude larger than the individual liposomes. By systematically varying protein concentration, liposome size, and density, we observed and characterized a variety of 3D dynamical patterns not seen on continuous 2D membranes, including traveling waves, dynamical spirals, and a coexistence phase. Simulations and linear stability analysis of a coarse-grained model revealed that the physical properties of the dispersed membrane effectively rescale both the protein–membrane binding rates and diffusion, two key parameters governing pattern formation and wavelength selection. These findings highlight the robustness of Min’s pattern-forming ability, suggesting that protein–membrane suspensions could serve as an adaptable template for studying out-of-equilibrium self-organization in 3D, beyond in vivo contexts.

36 MATERIALS SCIENCE↗
NASA NTRS1984

Kinetics of thermal donor generation in silicon

The generation kinetics of thermal donors at 450 C in Czochralski-grown silicon was found to be altered by high-temperature preannealing (e.g., 1100 C for 30 min). Thus, when compared with as-grown Si, high-temperature preannealed material exhibits a smaller concentration of generated thermal donors and a faster thermal donor saturation. A unified mechanism of nucleation and oxygen diffusion-controlled growth (based on solid-state plate transformation theory) is proposed to account for generation kinetics of thermal donors at 450 C, in as-grown and high-temperature preannealed Czochralski silicon crystals. This mechanism is consistent with the main features of the models which have been proposed to explain the formation of oxygen thermal donors in silicon.

Mao, B.-Y.↗
DOE OSTI2024

Hierarchical Conditioning of Diffusion Models Using Tree-of-Life for Studying Species Evolution

A central problem in biology is to understand how organisms evolve and adapt to their environment by acquiring variations in the observable characteristics or traits of species across the tree of life. With the growing availability of large-scale image repositories in biology and recent advances in generative modeling, there is an opportunity to accelerate the discovery of evolutionary traits automatically from images. Toward this goal, we introduce Phylo-Diffusion, a novel framework for conditioning diffusion models with phylogenetic knowledge represented in the form of HIERarchical Embeddings (HIER-Embeds). We also propose two new experiments for perturbing the embedding space of Phylo-Diffusion: trait masking and trait swapping, inspired by counterpart experiments of gene knockout and gene editing/swapping. Our work represents a novel methodological advance in generative modeling to structure the embedding space of diffusion models using tree-based knowledge. Our work also opens a new chapter of research in evolutionary biology by using generative models to visualize evolutionary changes directly from images. We empirically demonstrate the usefulness of Phylo-Diffusion in capturing meaningful trait variations for fishes and birds, revealing novel insights about the biological mechanisms of their evolution. (Model and code can be found at imageomics.github.io/phylo-diffusion)

Khurana, Mridul↗
DOE OSTI2025

Full event particle-level unfolding with variable-length latent variational diffusion

The measurements performed by particle physics experiments must account for the imperfect response of the detectors used to observe the interactions. One approach, unfolding, statistically adjusts the experimental data for detector effects. Recently, generative machine learning models have shown promise for performing unbinned unfolding in a high number of dimensions. However, all current generative approaches are limited to unfolding a fixed set of observables, making them unable to perform full-event unfolding in the variable dimensional environment of collider data. A novel modification to the variational latent diffusion model (VLD) approach to generative unfolding is presented, which allows for unfolding of high- and variable-dimensional feature spaces. The performance of this method is evaluated in the context of semi-leptonic t\bar{t} t t ‾ production at the Large Hadron Collider.

Shmakov, Alexander↗
DOE OSTI2018

Laser-driven strong magnetostatic fields with applications to charged beam transport and magnetized high energy-density physics

Powerful nanosecond laser-plasma processes are explored to generate discharge currents of a few 100 kA in coil targets, yielding magnetostatic fields (B-fields) in excess of 0.5 kT. The quasi-static currents are provided from hot electron ejection from the laser-irradiated surface. According to the model used in our paper, which describes the evolution of the discharge current, the major control parameter is the laser irradiance Ilasλ2las. The space-time evolution of the B-fields is experimentally characterized by high-frequency bandwidth B-dot probes and proton-deflectometry measurements. The magnetic pulses, of ns-scale, are long enough to magnetize secondary targets through resistive diffusion. We applied it in experiments of laser-generated relativistic electron transport through solid dielectric targets, yielding an unprecedented 5-fold enhancement of the energy-density flux at 60 μm depth, compared to unmagnetized transport conditions. These studies pave the ground for magnetized high-energy density physics investigations, related to laser-generated secondary sources of radiation and/or high-energy particles and their transport, to high-gain fusion energy schemes, and to laboratory astrophysics.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2024

Flat Spectra of Energetic Particles in Interplanetary Shock Precursors

The observed energy spectra of accelerated particles at interplanetary shocks often do not match the diffusive shock acceleration (DSA) theory predictions. In some cases, the particle flux forms a plateau over a wide range of energies, extending upstream of the shock for up to seven flux e-folds before submerging into the background spectrum. Remarkably, at and downstream of the shock we have studied in detail, the flux falls off in energy as ϵ -1 , consistent with the DSA prediction for a strong shock. The upstream plateau suggests a particle transport mechanism different from those traditionally employed in DSA models. We show that a standard (linear) DSA solution based on a widely accepted diffusive particle transport with an underlying resonant wave–particle interaction is inconsistent with the plateau in the particle flux. To resolve this contradiction, we modify the DSA theory in two ways. First, we include a dependence of the particle diffusivity κ on the particle flux F (nonlinear particle transport). Second, we invoke short-scale magnetic perturbations that are self-consistently generated by, but not resonant with, accelerated particles. They lead to the particle diffusivity increasing with the particle energy as ∝ϵ 3/2 that simultaneously decreases with the particle flux as 1/F. The combination of these two trends results in the flat spectrum upstream. We speculate that nonmonotonic spatial variations of the upstream spectrum, apart from being time-dependent, may also result from non-DSA acceleration mechanisms at work upstream, such as stochastic Fermi or magnetic pumping acceleration.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2015

Printable organic thin film transistors for glucose detection incorporating inkjet-printing of the enzyme recognition element

The effect of device architecture upon the response of printable enzymatic glucose sensors based on poly(3-hexythiophene) (P3HT) organic thin film transistors is presented. The change in drain current is used as the basis for glucose detection and we show that significant improvements in drain current response time can be achieved by modifying the design of the sensor structure. In particular, we show that eliminating the dielectric layer and reducing the thickness of the active layer reduce the device response time considerably. The results are in good agreement with a diffusion based model of device operation, where an initial rapid dedoping process is followed by a slower doping of the P3HT layer from protons that are enzymatically generated by glucose oxidase (GOX) at the Nafion gate electrode. The fitted diffusion data are consistent with a P3HT doping region that is close to the source-drain electrodes rather than located at the P3HT:[Nafion:GOX] interface. Finally, we demonstrate that further improvements in sensor structure and morphology can be achieved by inkjet-printing the GOX layer, offering a pathway to low-cost printed biosensors for the detection of glucose in saliva.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2024

Spectroscopy-guided discovery of three-dimensional structures of disordered materials with diffusion models

Spectroscopy techniques such as x-ray absorption near edge structure (XANES) provide valuable insights into the atomic structures of materials, yet the inverse prediction of precise structures from spectroscopic data remains a formidable challenge. In this study, we introduce a framework that combines generative artificial intelligence models with XANES spectroscopy to predict three-dimensional atomic structures of disordered systems, using amorphous carbon (a-C) as a model system. In this work, we introduce a new framework based on the diffusion model, a recent generative machine learning method, to predict 3D structures of disordered materials from a target property. For demonstration, we apply the model to identify the atomic structures of a-C as a representative material system from the target XANES spectra. We show that conditional generation guided by XANES spectra reproduces key features of the target structures. Furthermore, we show that our model can steer the generative process to tailor atomic arrangements for a specific XANES spectrum. Finally, our generative model exhibits a remarkable scale-agnostic property, thereby enabling generation of realistic, large-scale structures through learning from a small-scale dataset (i.e. with small unit cells). Our work represents a significant stride in bridging the gap between materials characterization and atomic structure determination; in addition, it can be leveraged for materials discovery in exploring various material properties as targeted.

36 MATERIALS SCIENCE↗
DOE OSTI2023

Helium bubble size effects on the surface morphological response of plasma-facing tungsten

Abstract We report a simulation study on the effects of helium (He) bubble size on the morphological evolution and pattern formation on the surface of tungsten used as a plasma-facing component (PFC) in nuclear fusion devices. We have carried out a systematic investigation based on self-consistent dynamical simulations of surface morphological evolution according to an atomistically-informed, 3D continuum-scale model that captures well the relevant length and time scales of surface nanostructure formation in PFC tungsten. The model accounts for PFC surface diffusion, driven by the biaxial compressive stress originating from the over-pressurized He bubbles in the near-surface region of PFC tungsten as a result of He plasma exposure, combined with the formation of self-interstitial atoms in tungsten that diffuse toward the PFC surface and the flux of surface adatoms generated as a result of surface vacancy-adatom pair formation upon He implantation; this transport of surface adatoms contributes to the anisotropic growth of surface nanostructural features due to the different rates of adatom diffusion along and across step edges of islands on the tungsten surface. Our detailed analysis reveals that varying the average He bubble size plays an important role in the PFC surface growth kinetics as well as the resulting surface topography. Specifically, we find that an increase in the He bubble size leads to a deceleration in the growth rate of the tungsten nanotendrils that emanate from the PFC surface. We also find that the separation distance between the resulting surface features increases with increasing He bubble size, as well as over time. This coarsening effect is a thermally activated process resulting in an accurate description of the temperature dependence of the average surface feature separation by an Arrhenius relation.

36 MATERIALS SCIENCE↗
DOE OSTI2010

SPECTRAL INDEX STUDIES OF THE DIFFUSE RADIO EMISSION IN ABELL 2256: IMPLICATIONS FOR MERGER ACTIVITY

We present a multi-wavelength analysis of the merging rich cluster of galaxies, Abell 2256 (A2256). We have observed A2256 at 150 MHz using the Giant Metrewave Radio Telescope and successfully detected the diffuse radio halo and the relic emission over a {approx}1.2 Mpc{sup 2} extent. Using this 150 MHz image and the images made using archival observations from the Very Large Array (VLA; 1369 MHz) and the Westerbrok Synthesis Radio Telescope (WSRT; 330 MHz), we have produced spectral index images of the diffuse radio emission in A2256. These spectral index images show a distribution of flat spectral index (S {proportional_to} {nu}{sup {alpha}}, {alpha} in the range -0.7 to -0.9) plasma in the region NW of the cluster center. Regions showing steep spectral indices ({alpha} in the range -1.0 to -2.3) are toward the SE of the cluster center. These spectral indices indicate synchrotron lifetimes for the relativistic plasmas in the range 0.08-0.4 Gyr. We interpret this spectral behavior as resulting from a merger event along the direction SE to NW within the last 0.5 Gyr or so. A shock may be responsible for the NW relic in A2256 and the megaparsec scale radio halo toward the SE is likely to be generated by the turbulence injected by mergers. Furthermore, the diffuse radio emission shows spectral steepening toward lower frequencies. This low-frequency spectral steepening is consistent with a combination of spectra from two populations of relativistic electrons created at two epochs (two mergers) within the last {approx}0.5 Gyr. Earlier interpretations of the X-ray and the optical data also suggested that there were two mergers in Abell 2256 in the last 0.5 Gyr, consistent with the current findings. Also highlighted in this study is the futility of correlating the average temperatures of thermal gas and the average spectral indices of diffuse radio emission in the respective clusters.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2025

Dark matter in X-rays: revised XMM-Newton limits and new constraints from eROSITA

We investigate two classes of dark matter (DM) candidates, sub-GeV particles and primordial black holes (PBHs), that can inject low-energy electrons and positrons into the Milky Way and leave observable signatures in the X-ray sky. In the case of sub-GeV DM, annihilation or decay into e + e - contributes to the diffuse sea of cosmic-ray (CR) leptons, which can generate bremsstrahlung and inverse Compton (IC) emission on Galactic photon fields, producing a broad spectrum from X-rays to γ-rays detectable by instruments such as eROSITA and XMM-Newton. For PBHs with masses below ∼10 17 g, Hawking evaporation similarly yields low-energy e ± , leading to comparable diffuse emission. Using the first data release from eROSITA and incorporating up-to-date CR propagation and diffusion parameters, we derive new constraints on both scenarios. For sub-GeV DM, we exclude thermally averaged annihilation cross sections in the range ∼ 10 -27 –10 -25 cm 3 /s and decay lifetimes of ∼ 10 24 –10 25 s for masses between 1 MeV and 1 GeV, with eROSITA outperforming previous X-ray constraints below ∼ 30 MeV. For asteroid-mass PBHs, we set new bounds on the DM fraction based on their Hawking-induced emission. Finally, we revisit previous constraints in 10.1088/1475-7516/2023/07/026JCAP 07 (2023) 026 and consequently 10.3847/1538-4357/ad41e0Astrophys. J. 968 (2024) 46 derived from XMM-Newton, finding that they were approximately four orders of magnitude too stringent due to the use of the instrument's geometric solid angle rather than its exposure-weighted solid angle. Upon using the exposure-weighted solid angle, we show that the revised XMM-Newton limits are slightly weaker than those from eROSITA.

X-rays↗
DOE OSTI2025

Gray-Scott reaction-diffusion

This dataset consists of 1000 records in a single HDF5 file generated from the simulation code available at: https://github.com/lezahlie/greyscott_simulation. More about the Gray-Scott model is explained here https://visualpde.com/nonlinear-physics/gray-scott.html.

97 MATHEMATICS AND COMPUTING↗
NASA NTRS1993

Biogeochemical cycles of carbon, sulfur, and free oxygen in a microbial mat

Complete budgets for carbon and oxygen have been constructed for cyanobacterial mats dominated by Microcoleus chthonoplastes from the evaporating ponds of a salt works. We infer from the data the various sinks for O2 as well as the sources of carbon for primary production. Although seasonal variability exists, a major percentage of the O2 produced during the day did not diffuse out of the mat but was used within the mat to oxidize both organic carbon and the sulfide produced by sulfate reduction. At night, most of the O2 that diffused into the mat was used to oxidize sulfide, with O2 respiration of minor importance. During the day, the internal mat processes of sulfate reduction and O2 respiration generated as much or more inorganic carbon (DIC) for primary production as diffusion into the mat. Oxygenic photosynthesis was the most important process of carbon fixation. At night, the DIC lost from the mat was mostly from sulfate reduction. Elemental fluxes across the mat/brine interface indicated that carbon with an oxidation state of greater than zero was taken up by the mat during the day and liberated from the mat at night. Overall, carbon with an average oxidation state of near zero accumulated in the mat. Both carbon fixation and carbon oxidation rates varied with temperature by a similar amount.

Canfield, Donald E.↗
DOE OSTI2011

Anomalous is ubiquitous

Brownian motion is widely considered the quintessential model of diffusion processes-the most elemental random transport processes in Science and Engineering. Yet so, examples of diffusion processes displaying highly non-Brownian statistics-commonly termed 'Anomalous Diffusion' processes-are omnipresent both in the natural sciences and in engineered systems. The scientific interest in Anomalous Diffusion and its applications is growing exponentially in the recent years. In this Paper we review the key statistics of Anomalous Diffusion processes: sub-diffusion and super-diffusion, long-range dependence and the Joseph effect, Levy statistics and the Noah effect, and 1/f noise. We further present a theoretical model-generalizing the Einstein-Smoluchowski diffusion model-which provides a unified explanation for the prevalence of Anomalous Diffusion statistics. Our model shows that what is commonly perceived as 'anomalous' is in effect ubiquitous. - Highlights: > The article provides an overview of Anomalous Diffusion (AD) statistics. > The Einstein-Smoluchowski diffusion model is extended and generalized. > The generalized model universally generates AD statistics. > A unified 'universal macroscopic explanation' for AD statistics is established. > AD statistics are shown to be fundamentally connected to robustness.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2024

Report on the AAPM grand challenge on deep generative modeling for learning medical image statistics

Abstract Background The findings of the 2023 AAPM Grand Challenge on Deep Generative Modeling for Learning Medical Image Statistics are reported in this Special Report. Purpose The goal of this challenge was to promote the development of deep generative models for medical imaging and to emphasize the need for their domain‐relevant assessments via the analysis of relevant image statistics. Methods As part of this Grand Challenge, a common training dataset and an evaluation procedure was developed for benchmarking deep generative models for medical image synthesis. To create the training dataset, an established 3D virtual breast phantom was adapted. The resulting dataset comprised about 108 000 images of size 512 512. For the evaluation of submissions to the Challenge, an ensemble of 10 000 DGM‐generated images from each submission was employed. The evaluation procedure consisted of two stages. In the first stage, a preliminary check for memorization and image quality (via the Fréchet Inception Distance [FID]) was performed. Submissions that passed the first stage were then evaluated for the reproducibility of image statistics corresponding to several feature families including texture, morphology, image moments, fractal statistics, and skeleton statistics. A summary measure in this feature space was employed to rank the submissions. Additional analyses of submissions was performed to assess DGM performance specific to individual feature families, the four classes in the training data, and also to identify various artifacts. Results Fifty‐eight submissions from 12 unique users were received for this Challenge. Out of these 12 submissions, 9 submissions passed the first stage of evaluation and were eligible for ranking. The top‐ranked submission employed a conditional latent diffusion model, whereas the joint runners‐up employed a generative adversarial network, followed by another network for image superresolution. In general, we observed that the overall ranking of the top 9 submissions according to our evaluation method (i) did not match the FID‐based ranking, and (ii) differed with respect to individual feature families. Another important finding from our additional analyses was that different DGMs demonstrated similar kinds of artifacts. Conclusions This Grand Challenge highlighted the need for domain‐specific evaluation to further DGM design as well as deployment. It also demonstrated that the specification of a DGM may differ depending on its intended use.

Radiology, Nuclear Medicine & Medical Imaging↗
DOE OSTI2017

Gas hydrate reservoirs and gas migration mechanisms in the Terrebonne Basin, Gulf of Mexico

Here, the interactions of microbial methane generation in fine-grained clay-rich sediments, methane migration, and gas hydrate accumulation in coarse-grained, sand-rich sediments are not yet fully understood. The Terrebonne Basin in the northern Gulf of Mexico provides an ideal setting to investigate the migration of methane resulting in the formation of hydrate in thin sand units interbedded with fractured muds. Using 3D seismic and well log data, we have identified several previously unidentified hydrate bearing units in the Terrebonne Basin. Two units are >100 m- thick fine-grained clay-rich units where gas hydrate occurs in near-vertical fractures. In some locations, these fine-grained units lack fracture features, and they contain 1-4-m thick hydrate bearing-sands. In addition, several other thin sand units were identified that contain gas hydrate, including one sand that was intersected by a well at the location of a discontinuous bottom-simulating reflector. Using correlation of well log data to seismic data, we have mapped and described these new units in detail across the extent of the available data, allowing us to determine the variation of seismic amplitudes and investigate the distribution of free gas and/or hydrate. We present several potential source-reservoir scenarios between the thick fractured mud units and thin hydrate bearing sands. We observe that hydrate preferentially forms within thin sand layers rather than fractures when sands are present in larger marine mud units. Based on regional mapping showing the patchy lateral extent of the thin sand layers, we propose that diffusive methane migration or short-migration of microbially generated methane from the marine mud units led to the formation of hydrate in these thin sands, as discontinuous sands would not be conducive to long-range migration of methane from deeper reservoirs.

03 NATURAL GAS↗
DOE OSTI2012

Vapor generation methods for explosives detection research

The generation of calibrated vapor samples of explosives compounds remains a challenge due to the low vapor pressures of the explosives, adsorption of explosives on container and tubing walls, and the requirement to manage (typically) multiple temperature zones as the vapor is generated, diluted, and delivered. Methods that have been described to generate vapors can be classified as continuous or pulsed flow vapor generators. Vapor sources for continuous flow generators are typically explosives compounds supported on a solid support, or compounds contained in a permeation or diffusion device. Sources are held at elevated isothermal temperatures. Similar sources can be used for pulsed vapor generators; however, pulsed systems may also use injection of solutions onto heated surfaces with generation of both solvent and explosives vapors, transient peaks from a gas chromatograph, or vapors generated by s programmed thermal desorption. This article reviews vapor generator approaches with emphasis on the method of generating the vapors and on practical aspects of vapor dilution and handling. In addition, a gas chromatographic system with two ovens that is configurable with up to four heating ropes is proposed that could serve as a single integrated platform for explosives vapor generation and device testing. Issues related to standards, calibration, and safety are also discussed.

2,4-DNT↗