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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 631 records · Page 35
All sourcesNASA NTRSDOE OSTI
DOE OSTI2019

StructureDistiller: Structural relevance scoring identifies the most informative entries of a contact map

Protein folding and structure prediction are two sides of the same coin. Contact maps and the related techniques of constraint-based structure reconstruction can be considered as unifying aspects of both processes. We present the Structural Relevance (SR) score which quantifies the information content of individual contacts and residues in the context of the whole native structure. The physical process of protein folding is commonly characterized with spatial and temporal resolution: some residues are Early Folding while others are Highly Stable with respect to unfolding events. We employ the proposed SR score to demonstrate that folding initiation and structure stabilization are subprocesses realized by distinct sets of residues. The example of cytochrome c is used to demonstrate how StructureDistiller identifies the most important contacts needed for correct protein folding. This shows that entries of a contact map are not equally relevant for structural integrity. The proposed StructureDistiller algorithm identifies contacts with the highest information content; these entries convey unique constraints not captured by other contacts. Identification of the most informative contacts effectively doubles resilience toward contacts which are not observed in the native contact map. Furthermore, this knowledge increases reconstruction fidelity on sparse contact maps significantly by 0.4 Å.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2014

Passivity analysis for a winged re-entry vehicle

Application of simple adaptive control (SAC) theory to the design of guidance and control systems for winged re-entry vehicles has been proven successful. To apply SAC to these non-linear and non-stationary systems, it needs to be Almost Strictly Passive (ASP), which is an extension of the Almost Strictly Positive Real (ASPR) condition for linear, time-invariant systems. To fulfill the ASP condition, the controlled, non-linear system has to be minimum-phase (i.e., the zero dynamics is stable), and there is a specific condition for the product of output and input matrix. Earlier studies indicate that even the linearised system is not ASPR. The two problems at hand are: 1) the system is non-minimum phase when flying with zero bank angle, and 2) whenever there is hybrid control, e.g., yaw control is established by combined reaction and aerodynamic control for the major part of flight, the second ASPR condition cannot be met. In this paper we look at both issues, the former related to the guidance system and the latter to the attitude-control system. It is concluded that whenever the nominal bank angle is zero, the passivity conditions can never be met, and guidance should be based on nominal commands and a redefinition of those whenever the error becomes too large. For the remaining part of the trajectory, the passivity conditions are marginally met, but it is proposed to add feedforward compensators to alleviate these conditions. The issue of hybrid control is avoided by redefining the controls with total control moments and adding a so-called control allocator. Deriving the passivity conditions for rotational motion, and evaluating these conditions along the trajectory shows that the (non-linear) winged entry vehicle is ASP. The sufficient conditions to apply SAC for attitude control are thus met.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2025

A Novel Protection Scheme for Unbalanced Faults in Inverter Dominated Networks: A Computationally Efficient Algorithm for Entry-Level Relays

Microgrids are now a common practice in distribution systems to increase resilience and reliability. However, microgrid protection remains a critical challenge, considering its requirement to operate in both grid connected and islanded, and the variability in fault characteristics under each mode of operation. This paper presents unbalanced power (S unb ) based fault detection algorithm, which considers local voltage and current unbalances to determine faults in the system. S unb is a computationally efficient fault detection algorithm that is suitable for implementation in the programmable logic of entry level protective relays. In addition, the difference in current and voltage unbalance (D n ) is used to determine the fault type. The proposed method demonstrates high sensitivity and selectivity for line-to-ground (LG), line-to-line (LL), and double line-to-ground (LLG) faults, representing the most common faults in distribution systems. It also allows relay coordination with upstream and downstream protection devices in both island and grid connected operation, while preserving grading margins. The same pickup and time multiplier settings of a particular relay for both modes of operation eliminates the need for adaptive settings, which rely on communication networks. Validation was performed with a hardware-in-the-loop (HIL) setup using Typhoon HIL real time simulator interfaced with three entry-level, SEL 751 relays. Results confirmed the algorithm’s ability to discriminate fault conditions, and determine the fault type under both operating modes, maintain fast detection times, and ensure proper protection coordination.

fault classification↗
DOE OSTI2019

α‐Synuclein toxicity in yeast and human cells is caused by cell cycle re‐entry and autophagy degradation of ribonucleotide reductase 1

Abstract α‐Synuclein (aSyn) toxicity is associated with cell cycle alterations, activation of DNA damage responses (DDR), and deregulation of autophagy. However, the relationships between these phenomena remain largely unknown. Here, we demonstrate that in a yeast model of aSyn toxicity and aging, aSyn expression induces Ras2‐dependent growth signaling, cell cycle re‐entry, DDR activation, autophagy, and autophagic degradation of ribonucleotide reductase 1 (Rnr1), a protein required for the activity of ribonucleotide reductase and dNTP synthesis. These events lead to cell death and aging, which are abrogated by deleting RAS2 , inhibiting DDR or autophagy, or overexpressing RNR1 . aSyn expression in human H4 neuroglioma cells also induces cell cycle re‐entry and S‐phase arrest, autophagy, and degradation of RRM1, the human homologue of RNR1 , and inhibiting autophagic degradation of RRM1 rescues cells from cell death. Our findings represent a model for aSyn toxicity that has important implications for understanding synucleinopathies and other age‐related neurodegenerative diseases.

Sampaio‐Marques, Belém↗
DOE OSTI2013

Structure of the CCR5 Chemokine Receptor-HIV Entry Inhibitor Maraviroc Complex

The CCR5 chemokine receptor acts as a co-receptor for HIV-1 viral entry. Here we report the 2.7 angstrom–resolution crystal structure of human CCR5 bound to the marketed HIV drug maraviroc. The structure reveals a ligand-binding site that is distinct from the proposed major recognition sites for chemokines and the viral glycoprotein gp120, providing insights into the mechanism of allosteric inhibition of chemokine signaling and viral entry. A comparison between CCR5 and CXCR4 crystal structures, along with models of co-receptor–gp120-V3 complexes, suggests that different charge distributions and steric hindrances caused by residue substitutions may be major determinants of HIV-1 co-receptor selectivity. These high-resolution insights into CCR5 can enable structure-based drug discovery for the treatment of HIV-1 infection.

Tan, Qiuxiang↗
DOE OSTI2012

TRIIODOTHYRONINE INCREASES MYOCARDIAL FUNCTION AND PYRUVATE ENTRY INTO THE CITRIC ACID CYCLE AFTER REPERFUSION IN A MODEL OF INFANT CARDIOPULMONARY BYPASS

We utilized a translational model of infant CPB to test the hypothesis that T3 modulates pyruvate entry into the citric acid cycle (CAC) thereby providing the energy support for improved cardiac function after ischemia-reperfusion. Methods and Results: Neonatal piglets received intracoronary [2-13Carbon(13C)]-pyruvate for 40 minutes (8 mM) during control aerobic conditions (Cont) or immediately after reperfusion (IR) from global hypothermic ischemia. A third group (IR-Tr) received T3 (1.2 ug/kg) during reperfusion. We assessed absolute CAC intermediate levels (aCAC) and flux parameters into the CAC through oxidative pyruvate decarboxylation (PDC ) and anaplerotic carboxylation (PC; ) using 13C-labeled pyruvate and isotopomer analysis by gas and liquid chromatography-mass spectrometry and 13C NMR. Neither IR nor IR-Tr modified aCAC. However, compared to IR, T3 (group IR-Tr) increased cardiac power and oxygen consumption after CPB while elevating both PDC and PC (~ four-fold). T3 inhibited IR induced reductions in CAC intermediate molar percent enrichment (MPE) and oxaloacetate(citrate)/malate MPE ratio; an index of aspartate entry into the CAC. Conclusions: T3 markedly enhances PC and PDC thereby providing substrate for elevated cardiac function and work after reperfusion. The increases in pyruvate flux occur with preservation of the CAC intermediate pool. Additionally, T3 inhibition of reductions in CAC intermediate MPEs indicates that T3 reduces the reliance on amino acids (AA) for anaplerosis after reperfusion. Thus, AA should be more available for other functions such as protein synthesis.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2026

Seismic Recovery of Acoustic Source Height During the OSIRIS-REx Sample Return Capsule Re-Entry

Controlled hypersonic reentries with well‐constrained trajectories are exceedingly rare, yet they provide valuable reference cases for validating geophysical source characterization methods applicable to bolides and space debris. The 24 September 2023 re‐entry of the OSIRIS‐REx Sample Return Capsule, the first interplanetary capsule to return over the contiguous United States in nearly two decades, presented such an opportunity. Here, we present seismic observations of this event recorded at 16 stations across three sites at ground distances of 7–20 km from the trajectory. Using eigenray tracing through ground‐to‐space atmospheric specifications, we invert picked acoustic‐to‐seismic travel times for effective shock‐generated acoustic source altitudes along the known trajectory. The method recovers source heights of 57.9–59.5 km with travel‐time residuals <1 s across all stations. The seismic‐derived source heights, when compared at their along‐track positions, fall within the range of previously published infrasound‐derived heights for the corresponding trajectory segment, with intermethod differences comparable with the timing‐based uncertainty. These results suggest that air‐to‐ground coupling does not introduce a resolvable systematic timing bias in the picked near‐field seismic arrivals, supporting seismic observations as a complementary tool for altitude estimation of bolides, re‐entry vehicles, and other hypersonic atmospheric sources.

Silber, Elizabeth Allaryce [Sandia National Labora↗
DOE OSTI2010

A bio-synthetic interface for discovery of viral entry mechanisms.

Understanding and defending against pathogenic viruses is an important public health and biodefense challenge. The focus of our LDRD project has been to uncover the mechanisms enveloped viruses use to identify and invade host cells. We have constructed interfaces between viral particles and synthetic lipid bilayers. This approach provides a minimal setting for investigating the initial events of host-virus interaction - (i) recognition of, and (ii) entry into the host via membrane fusion. This understanding could enable rational design of therapeutics that block viral entry as well as future construction of synthetic, non-proliferating sensors that detect live virus in the environment. We have observed fusion between synthetic lipid vesicles and Vesicular Stomatitis virus particles, and we have observed interactions between Nipah virus-like particles and supported lipid bilayers and giant unilamellar vesicles.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Resilient U.S. Land Ports of Entry

The continued operation of Land Ports of Entry (LPOE), managed by the Customs and Border Protection (CBP) and General Services Administration% is vital to the U.S. economy and security. Border faculties are included in the Department of Homeland Security (DHS) Government Facilities Sector2, one of the 16 critical infrastructures "whose assets, systems, and networks, whether physical or virtual, are considered so vital to the United States that their incapacitation or destruction would have a debilitating effect on security, national economic security, national public health or safety, or any combination thereof.'" Specifically, disruptions to the flow of border crossing traffic, in the form of closures or increased border crossing wait times, impact the economy and security of all countries involved. This paper describes a process for analyzing and improving the resilience of U.S. Land Ports of Entry. For LPOE, the team believes that energy resilience is the primary objective due to the complete reliance on the e-manifest system and the increasing use of Multi-Energy Portals (MEPs). Emanifests are part of CPB's Automated Commercial Environment (ACE). They document several key pieces of information about cargo vehicles wishing to cross the border into the United States and are submitted before arriving at the port. Vehicles can be flagged for more invasive inspection based on the content of the e-manifest. MEPs are a non-intrusive inspection (NII) technology used to scan the contents of the cargo. Together MEPs and ACE serve an important role in aiding CBP with their mission to protect "the public from dangerous people and materials", and "enabling legitimate trade and travel.'" To analyze resilience of a port, the team would need to understand the port's current energy usage, which systems depend on energy and what backup systems exist, and any emergency operation plans that dictate how systems are operated in the event of a power outage. The team would also need to determine the design basis threats (DBTs) for the LPOE which could include natural disasters, manmade events, and accidents. The magnitudes of the DBTs are calculated and are then translated to expected impacts on the infrastructure and systems at the port. With this information gathered, existing LPOE models developed here at Sandia National Laboratories could be extended to support decisions about resilience. Current models are implemented in FlexSim, a 3rd party discrete event simulator. FlexSim provides 3-D visuals of physical layout that can reveal valuable insights, allows input to be variable (e.g. time it takes to interact with the CBP officer at primary inspection can vary) so that a whole range of possibilities can be captured in the results, and can be used to collect user-defined output metrics. Current LPOE models focus on cargo vehicle traffic, and process changes caused by the installation of new drive-through MEPs. Extending them to address resilience questions would require the addition of key pieces of information learned during the resilience analysis including critical systems, failure rates, and process changes for when failures occur. The primary output metric for current models is border crossing wait time. Additional metrics would also be added to the model to gain a more complete understanding of impacts related to resilience, for example, MEP scan rate. Once complete, the model could be used to analyze the effectiveness of mitigation strategies representing some future state.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗
DOE OSTI2024

Seismoacoustic measurements of the OSIRIS-REx re-entry with an off-grid Raspberry PiShake

Hypersonic re-entries of spacecraft are valuable analogues for the identification and tracking of natural meteoroids re-entering the Earth's atmosphere. We report on the detection of seismic and acoustic signals from the OSIRIS-REx landing sequence, acquired near the point of peak capsule heating and recorded using a fully off-grid Raspberry PiShake sensor. This simple setup is able to record all the salient features of both the seismic and acoustic wavefields; including the primary shockwave, later reverberations, and possible locally induced surface waves. Peak overpressures of 0.7 Pa and ground velocities of 2x10 -6 m/s yield lower bound on the air-to-ground coupling factor between 3 and 44 Hz of 1.4x10 -6 m/s/Pa, comparable to results from other re-entries.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2025

SuFEx-enabled high-throughput medicinal chemistry for developing potent tamoxifen analogs as Ebola virus entry inhibitors

Ebola virus (EBOV) causes severe hemorrhagic fever with a high mortality rate in humans. In acute infection, an abnormal immune response results in excessive inflammatory cytokines and uncontrolled systemic inflammation that can result in organ damage and multi-organ failure. While vaccines and monoclonal antibody therapies are available, there is an urgent need for effective small-molecule antivirals against EBOV. Here, we report on the optimization of tamoxifen, an EBOV-glycoprotein (GP) binder that inhibits viral entry, using our Sulfur-Fluoride Exchange (SuFEx) click chemistry-based high-throughput medicinal chemistry (HTMC) strategy. Using a “Direct-to-Biology” approach, we generated a focused library of 2,496 tamoxifen analogs overnight and screened them in a cell-based pseudo-EBOV infection assay. The HTMC workflow enabled the development of a potent EBOV entry inhibitor with submicromolar EC 50 cellular antiviral activity and more than 50-fold improvement in binding affinity against EBOV-GP compared to the parent compound. Our findings underscore the use of SuFEx-enabled HTMC for rapidly generating and assessing potential therapeutic candidates against viral and immune-mediated diseases in a cell-based assay.

Immunology↗
NASA NTRS1962

One-Dimensional Heat Conduction Through the Skin of a Vehicle upon Entering a Planetary Atmosphere at Constant Velocity and Entry Angle

Closed-form solutions of the one-dimensional heat-conduction equations for the flow of heat into a plate with a laminar boundary layer have been obtained for a configuration entering a planetary atmosphere with constant velocity and negative entry angle. The atmospheric density was assumed to obey an exponential law and the temperature was assumed constant initially. The solution is in the form of a Fourier series expansion which, for most practical applications, can be approximated by retaining only one term of the expression. The solution applies to the initial part of the entry before the maximum heating conditions are encountered.

SKIN TEMPERATURE↗
NASA NTRS1966

Entry capsule orbit determination accuracy

On-board tracking system of two-way coherent Doppler between entry capsule and orbiting bus for determining orbit of entry capsule and estimating atmospheric parameters.

COHERENT RADAR↗