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At least 631 records · Page 35

Time-dependent density functional theory with the orthogonal projector augmented wave method

The projector augmented wave (PAW) method of Blöchl linearly maps smooth pseudo wavefunctions to the highly oscillatory all-electron DFT orbitals. Compared to norm-conserving pseudopotentials (NCPP), PAW has the advantage of lower kinetic energy cutoffs and larger grid spacing at the cost of having to solve for non-orthogonal wavefunctions. We earlier developed orthogonal PAW (OPAW) to allow the use of PAW when orthogonal wavefunctions are required. In OPAW, the pseudo wavefunctions are transformed through the efficient application of powers of the PAW overlap operator with essentially no extra cost compared to NCPP methods. Previously, we applied OPAW to DFT. Here, we take the first step to make OPAW viable for post-DFT methods by implementing it in real-time time-dependent (TD) DFT. Using fourth-order Runge–Kutta for the time-propagation, we compare calculations of absorption spectra for various organic and biological molecules and show that very large grid spacings are sufficient, 0.6–0.7 bohr in OPAW-TDDFT rather than the 0.4–0.5 bohr used in traditional NCPP-TDDFT calculations. This reduces the memory and propagation costs by around a factor of 3. Our method would be directly applicable to any post-DFT methods that require time-dependent propagations such as the GW approximation and the Bethe–Salpeter equation.

Chemistry↗

Layer-dependence study of two-dimensional ferromagnets: Fe3GeTe2 and Fe5Ge2Te2

We have investigated the electrical transport properties of nanodevices fabricated from exfoliated flakes of two-dimensional metallic ferromagnets Fe3GeTe2 (FGT) and Fe5Ge2Te2 (FG2T) down to below three layers in thickness. The per-layer anomalous Hall conductivity even in thick FGT and FG2T devices is found to be much smaller than ∼e2h, the approximate value calculated for thick undoped crystals. Moreover, we obtain a power-law scaling relation between the per-layer anomalous Hall and per-layer longitudinal conductivities with an exponent close to 1.6, which agrees with the universal value for poor ferromagnetic conductors. Both FGT and FG2T devices show clear layer-dependent Curie temperatures and layer-dependent perpendicular magnetic anisotropy, with FG2T dominating the former and FGT dominating the latter for all thicknesses. Despite their declining trend as the device thickness decreases, both Curie temperature and magnetic anisotropy retain a significant fraction of their bulk values (>60% and >80% of the bulk values, respectively, even in the thinnest FG2T device), indicating attractive potential for practical applications.

Physics↗

Sparsified time-dependent Fourier neural operators for fusion simulations

This paper presents a sparsified Fourier neural operator for coupled time-dependent partial differential equations (ST-FNO) as an efficient machine learning surrogate for fluid and particle-based fusion codes such as NIMROD (Non-Ideal Magnetohydrodynamics with Rotation - Open Discussion) and GTC (Gyrokinetic Toroidal Code). ST-FNO leverages the structures in the governing equations and utilizes neural operators to represent Green's function-like numerical operators in the corresponding numerical solvers. Once trained, ST-FNO can rapidly and accurately predict dynamics in fusion devices compared with first-principle numerical algorithms. In general, ST-FNO represents an efficient and accurate machine learning surrogate for numerical simulators for multi-variable nonlinear time-dependent partial differential equations, with the proposed architectures and loss functions. The efficacy of ST-FNO has been demonstrated using quiescent H-mode simulation data from NIMROD and kink-mode simulation data from GTC. The ST-FNO H-mode results show orders of magnitude reduction in memory and central processing unit usage in comparison with the numerical solvers in NIMROD when computing fields over a selected poloidal plane. The ST-FNO kink-mode results achieve a factor of 2 reduction in the number of parameters compared to baseline FNO models without accuracy loss.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Characterization of the strain-rate–dependent mechanical response of single cell–cell junctions

Cell–cell junctions are essential components in multicellular structures and often experience strains of different magnitudes and rates. However, their mechanical behavior is currently underexplored due to the lack of techniques to quantitatively characterize junctional stress–strain relationships. Here we developed a polymeric microstructure to strain the mutual junction of a single cell pair while simultaneously recording the junction stress and observed previously unseen strain-rate–dependent junction responses. We showed that cytoskeleton growth could relax the stress buildup and prevent junction failure at low strain rates, while high strain rates led to synchronized junction failures at remarkably large strains (over 200%). We expect this platform and our biophysical understanding to form the foundation for the rate-dependent mechanics of cell–cell junctions.

36 MATERIALS SCIENCE↗

Scale-dependent tipping points of bacterial colonization resistance

The commonly observed stability of natural microbiomes is important for their function, yet the ubiquity of microbiome stability remains enigmatic. The strongest form of stability, colonization resistance, protects residents against invaders and is often associated with specific porous structures, such as skin follicles or intestinal crypts. By systematically probing the colonization of fly gut–derived bacteria in microfluidic pores of varying sizes, we revealed that colonization patterns and invasion rates strongly depend on the pore size. Mathematical modeling shows that bacteria spontaneously tend to organize into a dense colonization-resistant state in pores exceeding a critical size. The scale dependence of stability and resilience could bias ecological filtering in microbiomes and should be considered in the design of microbial ecology experiments.

59 BASIC BIOLOGICAL SCIENCES↗

Cholesterol-dependent enzyme activity of human TSPO1

The amino acid sequence of the tryptophan-rich sensory proteins (TSPO) is substantially conserved throughout all kingdoms of life. Human mitochondrial TSPO1 (HsTSPO1) binds to porphyrins and steroids, although its interactions with these molecules remains unknown.HsTSPO1 is associated with numerous physiological and pathological disorders, but the underlying molecular mechanisms are unknown. Here, we disclose the finding of human mitochondrial TSPO as a cholesterol-dependent protoporphyrin IX oxygenase. The results of our biochemical characterization are consistent with structural data and evolutionary analysis. The dependence ofHsTSPO1 activity on cholesterol may be the result of the coevolution of this membrane protein with the membrane system. Our study provides a molecular foundation for comprehending the various roles played by mitochondrial TSPO in normal physiological and pathological situations.

Science & Technology - Other Topics↗

Anomalous thickness-dependent electrical conductivity in van der Waals layered transition metal halide, Nb 3 Cl 8

Understanding the electronic transport properties of layered, van der Waals transition metal halides (TMHs) and chalcogenides is a highly active research topic today. Of particular interest is the evolution of those properties with changing thickness as the 2D limit is approached. Here, we present the electrical conductivity of exfoliated single crystals of the TMH, cluster magnet, Nb 3 Cl 8 , over a wide range of thicknesses both with and without hexagonal boron nitride (hBN) encapsulation. The conductivity is found to increase by more than three orders of magnitude when the thickness is decreased from 280 µm to 5 nm, at 300 K. At low temperatures and below ~50 nm, the conductance becomes thickness independent, implying surface conduction is dominating. Temperature dependent conductivity measurements indicate Nb 3 Cl 8 is an insulator, however, the effective activation energy decreases from a bulk value of 310 meV to 140 meV by 5 nm. X-ray photoelectron spectroscopy (XPS) shows mild surface oxidation in devices without hBN capping, however, no significant difference in transport is observed when compared to the capped devices, implying the thickness dependent transport behavior is intrinsic to the material. A conduction mechanism comprised of a higher conductivity surface channel in parallel with a lower conductivity interlayer channel is discussed.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Temperature dependent striction effect in a single crystalline Nd 2 Fe 14 B revealed using a novel high temperature resistivity measurement technique

In this work, we studied the temperature dependence of resistivity in a single crystalline Nd 2 Fe 14 B using a newly developed high temperature probe. This novel probe employs mechanical pin connectors instead of conducting glue/paste. From warming and cooling curves, the Curie temperature was consistently measured around T c = 580 K. In addition, anomalous discrete jumps were found only in cooling curves between 400 and 500 K, but not shown in warming curves. More interestingly, when the jumps occurred during cooling, the resistivity was increased. This phenomenon could possibly be due to a temperature dependent striction effect induced by the re-orientation of magnetic domains well below the Curie temperature. Further microscopic study is needed to confirm this effect.

permanent magnet↗

Microstructure-dependent rate theory model of defect segregation and phase stability in irradiated polycrystalline LiAlO 2

We report gamma lithium aluminate (LiAlO 2 ) is a breeder material for tritium and is one of key components in a tritium-producing burnable absorber rod (TPBAR). Dissolution and precipitation of second phases such as LiAl 5 O 8 and voids are observed in irradiated LiAlO 2 . Such microstructure changes cause the degradation of thermomechanical properties of LiAlO 2 and affect tritium retention and release kinetics, and hence, the TPBAR performance. In this work, a microstructure-dependent model of radiation-induced segregation (RIS) has been developed for investigating the accumulation of species and phase stability in polycrystalline LiAlO 2 structures under irradiation. Three sublattices (i.e. [Li, Al, V] I [O, V o ] II [Li i , Al i , O i , V i ] III ), and concentrations of six diffusive species (i.e. Li; vacancy of Li or Al at [Li, Al, V] I sublattice, O vacancy at [O, V o ] II sublattice, and Li, Al and O interstitials at [Li i , Al i , O i , V i ] III interstitial sublattices; are used to describe spatial and temporal distributions of defects and chemistry. Microstructure-dependent thermodynamic and kinetic properties including the generation, reaction, and chemical potentials of defects and defect mobility are taken into account in the model. The parametric studies demonstrated the capability of the developed RIS model to assess the effect of thermodynamic and kinetic properties of defects on the segregation and depletion of species in polycrystalline structures and to explain the phase stability observed in irradiated LiAlO 2 samples. The developed RIS model will be extended to study the precipitation of LiAl 5 O 8 and voids and tritium retention by integrating the phase-field method.

36 MATERIALS SCIENCE↗

Nonlinear harmonics coupled by parallel wave propagations in a time-dependent plasma flow

In a time-dependent flow, nonlinear harmonics can be excited by coupling between linear waves and flow-induced harmonic waves. Examining the dispersion relations and selection rules for the coupling, we investigate nonlinearly coupled harmonics for waves propagating along the magnetic field line in a magnetized plasma, as well as waves in an unmagnetized plasma. The coupled harmonics in a plasma flow are described by analytic dispersion relations and selection rules. This nonlinear coupling is corroborated by the particle-in-cell simulation. Here, the coupled-harmonics model describes a mechanism for the excitation of nonlinear harmonics from linear waves in a time-dependent flow. The spectral analysis of the dispersion relation provides a useful way to evaluate the spatiotemporal behavior of a plasma flow.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Species dependence of the impurity injection induced poloidal flow and magnetic island rotation in a tokamak

Abstract Recent experiments have demonstrated the species dependence of the impurity poloidal drift direction along with the magnetic island rotation in the poloidal plane. Our resistive MHD simulations have reproduced such a dependence of the impurity poloidal flow, which is found mainly determined by a local plasmoid formation due to the impurity injection. The synchronized magnetic island rotation is dominantly driven by the electromagnetic torque produced by the impurity radiation primarily through the modification to the axisymmetric components of current density.

Physics↗

Assessing time-dependent temperature profile predictions using reduced transport models for high performing NSTX plasmas

Time-dependent, predictive simulations were performed with the 1.5D tokamak integrated modeling code TRANSP on a large set of well-analyzed, high performing discharges from the National Spherical Torus Experiment (NSTX) in order to evaluate how well modern reduced transport models can reproduce experimentally observed temperature profiles in spherical tokamaks. Overall, it is found that simulations using the Multi-Mode Model (MMM) more consistently agree with the NSTX observations than those using the Trapped Gyro-Landau Fluid (TGLF) model, despite TGLF requiring orders of magnitude greater computational cost. When considering all examined discharges, MMM has median overpredictions of electron temperature (T e ) and ion temperature (T i ) profiles of 28% and 27%, respectively, relative to the experiment. TGLF overpredicts T e by 46%, with much larger variance than MMM, and underpredicts T i by 25%. As the ratio of kinetic to magnetic field pressure (β) is increased across NSTX discharges, TGLF predicts lower T e and significant flattening of the T i profile, conflicting with NSTX observations. When using an electrostatic version of TGLF, both T e and T i are substantially overpredicted, underscoring the importance of electromagnetic turbulence in the high β spherical tokamak regime. Additionally, calculations with neural net surrogate models for TGLF were performed outside of TRANSP with a time slice flux matching transport solver, finding better agreement with experiment than the TRANSP simulations, highlighting the impact of different transport solvers and simulation techniques. Furthermore, the reasonable agreement with experiment of temperature profiles predicted by MMM motivates a more detailed examination of the sensitivities of the TRANSP simulations with MMM to different NSTX plasma regimes in a companion paper (Lestz et al Plasma Phys. Control. Fusion 67 105030), in preparation for self-consistent, time-dependent predictive modeling of NSTX-U scenarios.

Lestz, J. B. [General Atomics, San Diego, CA (Unit↗

Dependence of dark matter - electron scattering on the galactic dark matter velocity distribution

The rate of dark matter-electron scattering depends on the underlying velocity distribution of the dark matter halo. Importantly, dark matter-electron scattering is particularly sensitive to the high-velocity tail, which differs significantly amongst the various dark matter halo models. In this work, we summarize the leading halo models and discuss the various parameters which enter them. We recommend updated values for these parameters based on recent studies and measurements. Furthermore, we quantify the dependence of the dark matter-electron scattering rate on the choice of halo model and parameters, and demonstrate how these choices propagate to the predicted cross-section limits. The rate is most sensitive to changes in the circular velocity v 0 ; in silicon targets, we find that the changes in the rate predictions can range from Script $\mathcal{O}$(0.01%) to Script $\mathcal{O}$(100%) for contact interactions and Script $\mathcal{O}$(10%) to Script $\mathcal{O}$(100%) for long-range interactions.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Constraining scale dependent growth with redshift surveys

Ongoing and future redshift surveys have the capability to measure the growth rate of large scale structure at the percent level over a broad range of redshifts, tightly constraining cosmological parameters. Beyond general relativity, however, the growth rate in the linear density perturbation regime can be not only redshift dependent but scale dependent, revealing important clues to modified gravity. We demonstrate that a fully model independent approach of binning the gravitational strength G eff (k,z) matches scalar-tensor results for the growth rate fσ 8 (k,z) to 0.02%–0.27% rms accuracy. For data of the quality of the Dark Energy Spectroscopic Instrument (DESI) we find the bin values can be constrained to 1.4%–28%. We also explore the general scalar-tensor form, constraining the amplitude and past and future scalaron mass/shape parameters. Perhaps most interesting is the strong complementarity of low redshift peculiar velocity data with DESI-like redshift space distortion measurements, enabling improvements up to a factor 6–7 on 2D joint confidence contour areas. Finally, we quantify some issues with gravity parametrizations that do not include all the key physics.

79 ASTRONOMY AND ASTROPHYSICS↗

Velocity-dependent J-factors for Milky Way dwarf spheroidal analogues in cosmological simulations

We study the impact of the dark matter velocity distribution modelling on signals from velocity-dependent dark matter annihilation in Milky Way dwarf spheroidal galaxies. Using the high resolution APOSTLE simulations, we identify analogues corresponding to Milky Way dwarf spheroidal galaxies, and from these directly determine the dark matter pair-wise relative velocity distribution, and compare to best-fitting Maxwell-Boltzmann distribution models. For three velocity-dependent annihilation models, p-wave, d-wave, and the Sommerfeld model, we quantify the errors introduced when using the Maxwell-Boltzmann parameterization. We extract a simple power-law relation between the maximum circular velocity of the dwarf spheroidal analogue and the peak speed of the Maxwell-Boltzmann distribution. We show that this relation can be used to accurately calculate the dark matter relative velocity distribution, and find that it allows us to estimate the dark matter annihilation signal without the need to directly calculate the relative velocity distribution for each galaxy. The scatter in the J-factors calculated from the analogues dominates the uncertainty obtained when compared to the J-factor as determined from the observational data for each dwarf spheroidal, with the largest scatter from d-wave models and the smallest from Sommerfeld models.

79 ASTRONOMY AND ASTROPHYSICS↗

Energy-dependent flavour ratios in neutrino telescopes from charm

Abstract The origin of the observed diffuse neutrino flux is not yet known. Studies of the relative flavour content of the neutrino flux detected at Earth can give information on the production mechanisms at the sources and on flavour mixing, complementary to measurements of the spectral index and normalization. Here we demonstrate the effects of neutrino fluxes with different spectral shapes and different initial flavour compositions dominating at different energies, and we study the sensitivity of future measurements with the IceCube Neutrino Observatory. Where one kind of flux gives way to another, this shows up as a non-trivial energy dependence in the flavour compositions. We explore this in the context of slow-jet supernovae and magnetar-driven supernovae — two examples of astrophysical sources where charm production may be effective. Using current best-fit neutrino mixing parameters and the projected 2040 IceCube uncertainties, we use event ratios of different event morphologies at IceCube to illustrate the possibilities of distinguishing the energy dependence of neutrino flavour ratios.

Astronomy & Astrophysics↗

Modeling neutrino-induced scale-dependent galaxy clustering for photometric galaxy surveys

Abstract The increasing statistical precision of photometric redshift surveys requires improved accuracy of theoretical predictions for large-scale structure observables to obtain unbiased cosmological constraints. In ΛCDM cosmologies, massive neutrinos stream freely at small cosmological scales, suppressing the small-scale power spectrum. In massive neutrino cosmologies, galaxy bias modeling needs to accurately relate the scale-dependent growth of the underlying matter field to observed galaxy clustering statistics. In this work, we implement a computationally efficient approximation of the neutrino-induced scale-dependent bias (NISDB). Through simulated likelihood analyses of Dark Energy Survey Year 3 (DESY3) and Legacy Survey of Space and Time Year 1 (LSSTY1) synthetic data that contain an appreciable NISDB, we examine the impact of linear galaxy bias and neutrino mass modeling choices on cosmological parameter inference. We find model misspecification of the NISDB approximation and neutrino mass models to decrease the constraining power of photometric galaxy surveys and cause parameter biases in the cosmological interpretation of future surveys. We quantify these biases and devise mitigation strategies.

Astronomy & Astrophysics↗

Disentanglement of density and rotation dependences of the field penetration threshold on the J-TEXT tokamak

The field penetration threshold of magnetic perturbations has been observed to vary non-monotonically with an increase of density in ohmic plasmas on the J-TEXT tokamak. This observation appears contradicting the previous empirical density scaling law. Disentanglement of plasma density and rotation dependences of the field penetration threshold has been carried out. It shows that the field penetration threshold depends only weakly on the density but linearly on the plasma rotation. This result is not only important for the prediction of error field tolerance in fusion devices, but also opens a question on the role of density in the forced magnetic reconnection process in magnetized plasmas.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗