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NASA NTRSDate not supplied

Enabling Open and Interoperable Science: Multi-Omics Data Processing Platform with NASA GeneLab Standardized Bioinformatics Workflows for Space and Earth Research

Multi-omics biological data continues to be generated at an astounding pace. Genomics, transcriptomics, metabolomics, and proteomics, or collectively known as multi-omics data, are used to assess biological functions, and provide invaluable insights into human, animal, plant, and environmental health both on Earth and in Space. Despite the abundance of these valuable data, the need for bioinformatics expertise, particularly as it relates to the niche filed of space biology, and a lack of accessible resources for processing these data limit their usefulness in deriving biological insights. The NASA Open Science Data Repository (OSDR) provides access to omics data from various spaceflight and analog studies. To enhance the accessibility and reusability of these data, GeneLab (part of OSDR) designs and implements standardized, community-driven, open-source bioinformatics workflows to transform raw omics data into standardized processed data. Currently, GeneLab-processed data from hundreds of space studies have been reused for meta-analyses. This has led to new insights and scientific publications that extend beyond the initial research, thereby enriching our understanding of molecular-scale biological responses to the space environment. To make these bioinformatics workflows open and accessible, GeneLab teamed up with DOE-funded initiatives, including the National Microbiome Data Collaborative (NMDC), to create the NASA EDGE [Empowering the Development of Genomics Expertise] Bioinformatics web-based platform. NASA EDGE utilizes shared compute resources to run the GeneLab standardized bioinformatics workflows, which eliminates the need for researchers to have their own high performance computing cluster. The web-based platform makes complicated biological analyses incredibly easy to perform, thus expanding the reach of these analyses to bioinformatics novices, students, and even citizen scientists enabling them to contribute to scientific discoveries and progress. The authors will demonstrate how the NASA EDGE platform can be used to process microbial omics data hosted on OSDR as well as user-generated omics datasets using GeneLab’s standard workflows.

Amanda M. Saravia-Butler↗

NASA NTRS1993

Data management for support of the Oregon Transect Ecosystem Research (OTTER) project

Management of data collected during projects that involve large numbers of scientists is an often overlooked aspect of the experimental plan. Ecosystem science projects like the Oregon Transect Ecosystem Research (OTTER) Project that involve many investigators from many institutions and that run for multiple years, collect and archive large amounts of data. These data range in size from a few kilobytes of information for such measurements as canopy chemistry and meteorological variables, to hundreds of megabytes of information for such items as views from multi-band spectrometers flown on aircraft and scenes from imaging radiometers aboard satellites. Organizing and storing data from the OTTER Project, certifying those data, correcting errors in data sets, validating the data, and distributing those data to other OTTER investigators is a major undertaking. Using the National Aeronautics and Space Administration's (NASA) Pilot Land Data System (PLDS), a Support mechanism was established for the OTTER Project which accomplished all of the above. At the onset of the interaction between PLDS and OTTER, it was not certain that PLDS could accomplish these tasks in a manner that would aid researchers in the OTTER Project. This paper documents the data types that were collected under the auspices of the OTTER Project and the procedures implemented to store, catalog, validate, and certify those data. The issues of the compliance of investigators with data-management requirements, data use and certification, and the ease of retrieving data are discussed. We advance the hypothesis that formal data management is necessary in ecological investigations involving multiple investigators using many data gathering instruments and experimental procedures. The issues and experience gained in this exercise give an indication of the needs for data management systems that must be addressed in the coming decades when other large data-gathering endeavors are undertaken by the ecological science community.

Skiles, J. W.↗

NASA NTRS2009

Observations from Space: A Unique Vantage Point for the Study of the Environment and Possible Associations with Disease Occurrence

Health providers/researchers need environmental data to study and understand the geographic, environmental, and meteorological differences in disease. Satellite remote sensing of the environment offers a unique vantage point that can fill in the gaps of environmental, spatial, and temporal data for tracking disease. The field of geospatial health remains in its infancy, and this program will demonstrate the need for collaborations between multi-disciplinary research groups to develop the full potential. NASA will discuss the Public Health Projects developed to work with Grantees and the CDC while providing them with information on opportunities for future collaborations with NASA for future research.

Estes, S.↗

NASA NTRS2010

NASA Satellite Observations: A Unique Asset for the Study of the Environment and Implications for Public

Health providers/researchers need environmental data to study and understand the geographic, environmental, and meteorological differences in disease. Satellite remote sensing of the environment offers a unique vantage point that can fill in the gaps of environmental, spatial, and temporal data for tracking disease. The field of geospatial health remains in its infancy, and this program will demonstrate the need for collaborations between multi-disciplinary research groups to develop the full potential. NASA will discuss some of their Public Health Projects and also providing the audience with information on opportunities for future collaborations with NASA for future research.

Estes, Sue↗

NASA NTRS1992

International organisation of ocean programs: Making a virtue of necessity

When faced with the needs of climate prediction, a sharp contrast is revealed between existing networks for the observation of the atmosphere and for the ocean. Even the largest and longest-serving ocean data networks were created for their value to a specific user (usually with a defence, fishing or other maritime purpose) and the major compilations of historical data have needed extensive scientific input to reconcile the differences and deficiencies of the various sources. Vast amounts of such data remain inaccessible or unusable. Observations for research purposes have been generally short lived and funded on the basis of single initiatives. Even major programs such as FGGE, TOGA and WOCE have been driven by the dedicated interest of a surprisingly small number of individuals, and have been funded from a wide variety of temporary allocations. Recognising the global scale of ocean observations needed for climate research, international cooperation and coordination is an unavoidable necessity, resulting in the creation of such bodies as the Committee for Climatic Changes and the Ocean (CCCO), with the tasks of: (1) defining the scientific elements of research and ocean observation which meet the needs of climate prediction and amelioration; (2) translating these elements into terms of programs, projects or requirements that can be understood and participated in by individual nations and marine agencies; and (3) the sponsorship of specialist groups to facilitate the definition of research programs, the implementation of cooperative international activity and the dissemination of results.

Mcewan, Angus↗

NASA NTRS1995

The detector response matrices of the burst and transient source experiment (BATSE) on the Compton Gamma Ray Observatory

The detector response matrices for the Burst And Transient Source Experiment (BATSE) on board the Compton Gamma Ray Observatory (CGRO) are described, including their creation and operation in data analysis. These response matrices are a detailed abstract representation of the gamma-ray detectors' operating characteristics that are needed for data analysis. They are constructed from an extensive set of calibration data coupled with a complex geometry electromagnetic cascade Monte Carlo simulation code. The calibration tests and simulation algorithm optimization are described. The characteristics of the BATSE detectors in the spacecraft environment are also described.

Pendleton, Geoffrey N.↗

NASA NTRSDate not supplied

ICARTT File Format Enhancements: Supporting FAIRness and Data Discovery of Suborbital Campaign Data

Suborbital campaigns aim to accomplish a wide variety of goals and can include a variety of platforms, instruments, and parameters measured. In 2004, the ICARTT (International Consortium for Atmospheric Research on Transport and Transformation) standards were developed to fulfill data management needs for the ICARTT campaign. The ICARTT file format is text-based and composed of a header with important data description information and the data section. Built on the NASA Ames and GTE data formats, the ICARTT format was created to facilitate data exchange and promote collaborations among the science teams for achieving the ICARTT campaign goals. Due to its success and adaptation for use in many other field campaigns, the ICARTT file format became a NASA standard in 2010 and was amended in January 2017. These changes provided many enhancements, including the requirement for variable standard names. Primarily designed for airborne field studies, ICARTT has been further utilized for ground-based studies. NASA has made a commitment to build an inclusive open science community over the next decade. Open-source science strives to make publicly funded scientific research transparent, inclusive, accessible, and reproducible. The ICARTT format can host metadata that is critical for proper use of the data, particularly for in-situ measurements, and can enhance data discovery and accessibility. However, the required fields are often free text, meaning that the information is human readable, but not machine interpretable. Furthermore, the amount and type of information provided can vary significantly between principal investigators and campaigns. To support FAIR principles and interoperability, enhancements to the ICARTT standards are recommended. Possible recommendations include potential use of controlled and consistent vocabulary for variable standard name and certain common metadata elements; standardizing timestamps for easier data comparisons and analysis; and providing guidance on variable measurement units and how they are reported. Enhancing ICARTT metadata can further streamline the process to make suborbital data more readily available to the data user and improve variable-level metadata. Providing more variable-level metadata can enhance data searching and discovery, supporting NASA’s Open-Source Science Initiative (OSSI).

Megan Buzanowicz↗

NASA NTRS1981

ELAS - A geobased information system that is transferable to several computers

In the early years of remote sensing, emphasis was placed on the processing and analysis of data from a single multispectral sensor, such as the Landsat Multispectral Scanner System (MSS). However, in connection with attempts to use the data for resource management, it was realized that many deficiencies existed in single data sets. A need was established to geographically reference the MSS data and to register with it data from disparate sources. Technological transfer activities have required systems concepts that can be easily transferred to computers of different types in other organizations. ELAS (Earth Resources Laboratory Applications Software), a geographically based information system, was developed to meet the considered needs. ELAS accepts data from a variety of sources. It contains programs to geographically reference the data to the Universal Transverse Mercator grid. One of the primary functions of ELAS is to produce a surface cover map.

Whitley, S. L.↗

NASA NTRS1983

Development of a systems theoretical procedure for evaluation of the work organization of the cockpit crew of a civil transport airplane

To achieve optimum design for the man machine interface with aircraft, a description of the interaction and work organization of the cockpit crew is needed. The development of system procedure to evaluate the work organization of pilots while structuring the work process is examined. Statistical data are needed to simulate sequences of pilot actions on the computer. Investigations of computer simulation and applicability for evaluation of crew concepts are discussed.

Fricke, M.↗

NASA NTRS1991

Calibration of EOS multispectral imaging sensors and solar irradiance variability

Earth Observation System (EOS) optical multispectral imaging sensors provide images of the earth at various spectral and spatial resolutions, in the visible (VIS) and infrared (IR) regions of the solar spectrum. Accurate knowledge of extraterrestrial solar spectral irradiance and its variations with time, are needed to trace sensor calibration in space, and for the development of terrestrial atmospheric models needed in data validation. A brief review of the extraterrestrial solar VIS/IR spectral irradiance available in the literature will be reviewed, and the need to develop an extraterrestrial solar spectral irradiance for the EOS studies will be pointed out. The solar calibration of the Earth Radiation Budget Experiments (ERBE), earth-viewing sensors will be discussed. Observed variations in the solar constant (solar irradiance, at the mean sun-earth distance of one astronomical unit, integrated over all wavelengths), and solar spectral irradiance with solar activity and its implications for EOS studies also will be discussed.

Mecherikunnel, Ann↗

NASA NTRS1996

Data Archival and Retrieval Enhancement (DARE) Metadata Modeling and Its User Interface

The Defense Nuclear Agency (DNA) has acquired terabytes of valuable data which need to be archived and effectively distributed to the entire nuclear weapons effects community and others...This paper describes the DARE (Data Archival and Retrieval Enhancement) metadata model and explains how it is used as a source for generating HyperText Markup Language (HTML)or Standard Generalized Markup Language (SGML) documents for access through web browsers such as Netscape.

The Defense Nuclear Agency DNA DARE Data Archival ↗

NASA NTRSDate not supplied

Beyond Fair: Engagement, Data Usability, and Open Community Productivity through the NASA Open Science Data Repository

The FAIR principle (findable, accessible, interoperable, and reusable) governs the storage and sharing of NASA space biology and health data[1]. These guiding principles maximize reuse of data and the reproducibility of scientific findings. The NASA Open Science Data Repository (OSDR; an expansion of NASA GeneLab) was built on the FAIR principles and houses over 500 studies and close to 1000 datasets from decades of space life sciences experiments. OSDR embodies the FAIR principles through data governance that includes mediated, embargoed, and fully open access data. The FAIR data governance principles were recently proposed to be expanded to encompass a FAIREST framework for assessing research data repositories (FAIR + Engagement, Social connections, and Trust)[2]. FAIREST emphasizes the importance of data repositories engaging with the scientific community and gaining the trust of researchers regarding data quality. Trust also refers to the TRUST principles developed for assessment of digital repositories: Transparency, Responsibility, User Focus, Sustainability, Technology[3]. We present the “Open Science for Life in Space” Analysis Working Groups (AWGs) as evidence regarding the power of engagement, social connections, and trust which has enhanced OSDR’s capabilities and productivity. AWG members engage in two main activities. One, members provide feedback on OSDR scientific standards for data ingestion, curation, and reuse (study, subject and assay metadata; processing pipelines; dataset formats and uniformed structures for machine-readability). Two, AWG members collaborate to mine-reuse OSDR data to conduct scientific analysis. With nearly 800 active members, the AWGs have resulted in 32 publications re-using OSDR data and contributed many papers in two major special issues in Cell (2020) and Nature (2024). AWGs also serve as networking groups, facilitate social connections between researchers at all levels of experience, and also have a social online ‘Forum’ used to keep members informed on projects and opportunities. This community-centric, productive, and trustworthy data culture has resulted in a broader effect with international space agencies, academics, and the commercial space sector wanting to submit their data to OSDR. Ten studies of Inspiration 4 data were recently publicly released by OSDR, as were some JAXA human data. Coming up soon in OSDR are data submissions from the European Space Agency, Virgin Galactic PIs, and SpaceX Polaris Dawn. A major benefit of OSDR is the array of standardized and uniformly formatted data (which was developed through AWG member consensus), from which visualization tools, analysis tools, and machine learning models can be built or trained. This talk will cover the Multi-Study Visualization Tool, the Environmental Data Application, RadLab, and a UCSF-NSF funded knowledge graph biomedical health discovery tool ‘SPOKE’ currently being integrated with OSDR. OSDR also provides training programs in bioinformatics and machine learning to improve the scientific community’s awareness of data availability and to boost their ability to perform data analysis. The increasing engagement of the scientific community and the public with technologies powered by artificial intelligence (AI) heightens the need for data analysis to be transparent. The AI for Life in Space initiative leverages the data products provided in OSDR to train AI models, with an emphasis on explainable and trustworthy AI, which would not be possible without FAIR data and metadata. Overall, here we will demonstrate the importance for NASA life sciences data repositories to adhere to the FAIREST framework, by providing examples and success stories from different aspects of OSDR.

data↗

NASA NTRS1992

A land-surface testbed for EOSDIS

We propose to develop an on-line data distribution and interactive display system for the collection, archival, distribution and analysis of operational weather satellite data for applications in land surface studies. A 1,000 sq km scene of the western U.S. (centered on the Colorado Rockies) will be extracted from Advanced Very High Resolution Radiometer (AVHRR) imagery collected from morning and afternoon passes of the NOAA polar-orbiters at the direct readout stations operated by CU/CCAR. All five channels of these AVHRR data will be navigated and map registered at CU/CCAR and then be transferred to NCAR for storage in an on-line data system. Software will also be available at NCAR to process and navigate the raw AVHRR data as needed. A display workstation software, based on a Macintosh II computer, will be developed that will display and further process the AVHRR data for studies of vegetation monitoring and snowpack assessment. Various options of presently used techniques for both vegetation and snowpack monitoring will be implemented in the workstation software to provide the individual investigator with the freedom to interact with the satellite image data. The display software will be freely distributed online to interested investigators and the AVHRR data will be made available on-line to anyone interested. In addition, potential users will be sought out and connected to the on-line data archive. This experiment with an active on-line archive and interactive analysis systems will provide experience with a small scale EOSDIS.

Emery, William↗

NASA NTRS1993

A land-surface testbed for EOSDIS

We propose to develop an on-line data distribution and interactive display system for the collection, archival, distribution and analysis of operational weather satellite data for applications in land surface studies. A 1,000 square km scene of the western U.S. (centered on the Colorado Rockies) will be extracted from Advanced Very High Resolution Radiometer (AVHRR) imagery collected from morning and afternoon passes of the NOAA polar-orbiters at the direct readout stations operated by CU/CCAR. All five channels of these AVHRR data will be navigated and map registered at CU/CCAR and then be transferred to NCAR for storage in an on-line data system. Software will also be available at NCAR to process and navigate the raw AVHRR data as needed. A display workstation software, based on a Macintosh II computer, will be developed that will display and further process the AVHRR data for studies of vegetation monitoring and snowpack assessment. Various options of presently used techniques for both vegetation and snowpack monitoring will be implemented in the workstation software to provide the individual investigator with the freedom to interact with the satellite image data. The display software will be freely distrributed online to interested investigators, and the AVHRR data will be made available on-line to anyone interested. In addition, potential users will be sought out and connected to the on-line data archive. This experiment with an active on-line archive and interactive analysis systems will provide experience with a small scale EOSDIS.

Emery, William↗

NASA NTRS1997

Factors Influencing Pitot Probe Centerline Displacement in a Turbulent Supersonic Boundary Layer

When a total pressure probe is used for measuring flows with transverse total pressure gradients, a displacement of the effective center of the probe is observed (designated Delta). While this phenomenon is well documented in incompressible flow and supersonic laminar flow, there is insufficient information concerning supersonic turbulent flow. In this study, three NASA Lewis Research Center Supersonic Wind Tunnels (SWT's) were used to investigate pitot probe centerline displacement in supersonic turbulent boundary layers. The relationship between test conditions and pitot probe centerline displacement error was to be determined. For this investigation, ten circular probes with diameter-to-boundary layer ratios (D/delta) ranging from 0.015 to 0.256 were tested in the 10 ft x 10 ft SWT, the 15 cm x 15 cm SWT, and the 1 ft x 1 ft SWT. Reynolds numbers of 4.27 x 10(exp 6)/m, 6.00 x 10(exp 6)/in, 10.33 x 10(exp 6)/in, and 16.9 x 10(exp 6)/m were tested at nominal Mach numbers of 2.0 and 2.5. Boundary layer thicknesses for the three tunnels were approximately 200 mm, 13 mm, and 30 mm, respectively. Initial results indicate that boundary layer thickness, delta, and probe diameter, D/delta play a minimal role in pitot probe centerline offset error, Delta/D. It appears that the Mach gradient, dM/dy, is an important factor, though the exact relationship has not yet been determined. More data is needed to fill the map before a conclusion can be drawn with any certainty. This research provides valuable supersonic, turbulent boundary layer data from three supersonic wind tunnels with three very different boundary layers. It will prove a valuable stepping stone for future research into the factors influencing pitot probe centerline offset error.

Grosser, Wendy I.↗

NASA NTRS2016

Architecture for Cognitive Networking within NASA's Future Space Communications Infrastructure

Future space mission concepts and designs pose many networking challenges for command, telemetry, and science data applications with diverse end-to-end data delivery needs. For future end-to-end architecture designs, a key challenge is meeting expected application quality of service requirements for multiple simultaneous mission data flows with options to use diverse onboard local data buses, commercial ground networks, and multiple satellite relay constellations in LEO, GEO, MEO, or even deep space relay links. Effectively utilizing a complex network topology requires orchestration and direction that spans the many discrete, individually addressable computer systems, which cause them to act in concert to achieve the overall network goals. The system must be intelligent enough to not only function under nominal conditions, but also adapt to unexpected situations, and reorganize or adapt to perform roles not originally intended for the system or explicitly programmed. This paper describes an architecture enabling the development and deployment of cognitive networking capabilities into the envisioned future NASA space communications infrastructure. We begin by discussing the need for increased automation, including inter-system discovery and collaboration. This discussion frames the requirements for an architecture supporting cognitive networking for future missions and relays, including both existing endpoint-based networking models and emerging information-centric models. From this basis, we discuss progress on a proof-of-concept implementation of this architecture, and results of implementation and initial testing of a cognitive networking on-orbit application on the SCaN Testbed attached to the International Space Station.

space networks↗

NASA NTRS2016

Architecture for Cognitive Networking within NASAs Future Space Communications Infrastructure

Future space mission concepts and designs pose many networking challenges for command, telemetry, and science data applications with diverse end-to-end data delivery needs. For future end-to-end architecture designs, a key challenge is meeting expected application quality of service requirements for multiple simultaneous mission data flows with options to use diverse onboard local data buses, commercial ground networks, and multiple satellite relay constellations in LEO, MEO, GEO, or even deep space relay links. Effectively utilizing a complex network topology requires orchestration and direction that spans the many discrete, individually addressable computer systems, which cause them to act in concert to achieve the overall network goals. The system must be intelligent enough to not only function under nominal conditions, but also adapt to unexpected situations, and reorganize or adapt to perform roles not originally intended for the system or explicitly programmed. This paper describes architecture features of cognitive networking within the future NASA space communications infrastructure, and interacting with the legacy systems and infrastructure in the meantime. The paper begins by discussing the need for increased automation, including inter-system collaboration. This discussion motivates the features of an architecture including cognitive networking for future missions and relays, interoperating with both existing endpoint-based networking models and emerging information-centric models. From this basis, we discuss progress on a proof-of-concept implementation of this architecture as a cognitive networking on-orbit application on the SCaN Testbed attached to the International Space Station.

space networks↗

NASA NTRS1985

Activities of the Pilot Land Data System project

The University of Maryland's Remote Sensing Systems Laboratory submitted to NASA/Goddard an interim progress report on the work being conducted within its Pilot Land Data System IPLDS project. The Remote Sensing Systems Laboratory addressed the following tasks: (1) identify data types and data sources needed to describe the selected test sites in collaboration with Goddard's Hydrological Sciences Branch; (2) define the procedures necessary to access/acquire this data; (3) conduct meetings with the PLDS Systems Engineering Group to identify functional specification priorities for PLDS development; (4) assemble documentation on historical remotely sensed imagery and transfer of such information to the PLDS Data Management Group; (5) collect data identified by Goodard's Hydrological Sciences Branch for data set inventory in PLD; (6) develop a Workstation-PLDS system interface over high speed lines, (7) develop and test through a Phase 1 demonstration of a micro workstation to access PLDS; and (8) establish interdepartmental agreement of development of computer link for electronic access of water resources data from USGS.

Sircar, J. K.↗