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At least 631 records · Page 35

Application of deep neural networks to improve diagnostic accuracy of rheumatoid arthritis using diffuse optical tomography

A set of deep neural network models for rheumatoid arthritis (RA) classification using a highway network, a convolutional neural network and a residual network is proposed based on the data of diffuse optical tomography (DOT) utilising near-infrared light, which ensures early diagnosis of pathophysiological changes resulting from inflammation. A numerical model of the finger is used to generate images to overcome the inherent problem of insufficient clinical DOT images available. The proposed deep neural network models are applied to automatically classify simulated DOT images of inflamed and non-inflamed joints and transfer learning is also used to improve the performance of the classification. The results demonstrate that all three deep neural network methods improve the diagnostic accuracy as compared to the widely applied support vector machine (SVM), especially for high inter-subject variability databases. In cases of distinct modelled severity of disease, residual network achieved the highest accuracy (> 99 %), and both of highway and convolutional neural networks reached 99 %, respectively. However, as the severity of the modelled disease is reduced, this accuracy is reduced to 75.2 % for residual networks. The results indicate that transfer learning can improve the performance of deep neural network methods on RA classification from DOT data and highlight their potential as a computer aided tool in DOT diagnostic systems. (paper)

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

High-density CRISPRi screens reveal diverse routes to improved acclimation in cyanobacteria

Cyanobacteria are the oldest form of photosynthetic life on Earth and contribute to primary production in nearly every habitat, from permafrost to hot springs. Despite longstanding interest in the acclimation of these microbes, it remains poorly understood and challenging to rewire. Here, this study uses a high-density, genome-wide CRISPR interference screen to examine the influence of gene-specific transcriptional variation on the growth of Synechococcus sp. PCC 7002 under environmental extremes. Surprisingly, many partial knockdowns enhanced fitness under cold monochromatic conditions. Transcriptional repression of genes for core subunits of the NDH-1 complex, which are important for photosynthesis and carbon uptake, improved growth rates under both red and blue light but at distinct, color-specific optima. Most genes with fitness-improving knockdowns were distinct to each light color, and dual-target transcriptional repression produced nonadditive effects. Findings reveal diverse routes to improved acclimation in cyanobacteria (e.g., attenuation of genes involved in CO 2 uptake, light harvesting, translation, and purine metabolism) and provide an approach for using gradients in sgRNA activity to pinpoint biochemically influential transcriptional changes in cells.

59 BASIC BIOLOGICAL SCIENCES↗

Coupled machine learning–ecosystem ensemble models substantially improve predictions of nitrous oxide (N 2 O) fluxes from US croplands

Nitrous oxide (N 2 O) is a potent and persistent greenhouse gas, with rising atmospheric concentrations driven in part by inefficient use of synthetic nitrogen (N) fertilizers in agriculture. Predicting soil N 2 O emissions is challenging due to high spatial and temporal variability arising from complex soil biogeochemical processes. Process-based ecosystem models and standalone machine learning (ML) approaches without extensive site-specific calibration often miss high-emission episodes. Here, we show how an Ensemble Modeling System (EMS) based on outputs from an ensemble of ecosystem models coupled to an ensemble of ML models can improve predictions and understanding of N 2 O fluxes from US cropland. Trained and validated on ~12,000 N 2 O chamber measurements at 17 US Midwest sites (six crops, 35 management practices), the EMS accurately predicted daily fluxes of N 2 O at both training (R 2 = 0.84, RMSE = 16.4 g N ha −1 d −1 ) and held-out testing sites (R 2 = 0.84, RMSE = 6.2 g N ha −1 d −1 ). Analyses identified six dominant N 2 O drivers: soil organic carbon (SOC), NH 4 + , NO 3 - , water-filled pore space, temperature, and aboveground biomass production. Wet, warm soils produced large N 2 O peaks only with sufficient SOC and mineral N; in low-SOC soils, fluxes remained low. Incorporating these drivers into process-based models might significantly improve their predictive capacity. The EMS demonstrates a strong potential to predict N 2 O fluxes at unseen sites, enabling more reliable regional inventories, improved gap-filling where measurements are sparse, and enhanced understanding of mechanisms to advance targeted mitigation strategies in food, feed, and bioenergy crops.

AI↗

Pressure Drop Correlation Improvement for the Near-Wall Region of Pebble-Bed Reactors

Packed beds play an important role in several engineering fields, with their applications in nuclear energy being driven by the development of next-generation reactors utilizing pebble fuel. The random nature of a packed pebble bed creates a flow field that is complex and difficult to predict. Porous media models are an attractive option for modeling pebble-bed reactors (PBRs), as they provide intermediate fidelity results and are computationally efficient. Porous media models, however, rely on the use of correlations to estimate the effect of complicated flow features on the pressure drop and heat transfer in the system. Existing correlations were developed to predict the average behavior of the bed, but they are inaccurate in the near-wall region where the presence of the wall affects the pebble packing. This work aims to investigate the accuracy of a porous media model using the Kerntechnischer Ausschuss (KTA) correlation, the most common pressure drop correlation for PBRs compared to the high-fidelity large eddy simulation (LES). A bed of 1568 pebbles is investigated at Reynolds numbers from 625 to 10 000. The bed is divided into five concentric subdomains to compare the average velocity, friction losses, and form losses between the porous media and LES codes. The comparison between the LES simulation and the KTA correlation revealed that the KTA correlation largely underpredicts the form losses in the near-wall region, leading to an overprediction of the velocity near the wall by nearly 30%. An investigation of the form losses across the range of Reynolds numbers in the LES results provided additional insight into how the KTA correlation may be improved to better predict these spatial effects in a pebble bed. These data suggest that the form coefficient near the wall must be increased by 48% while decreasing the form coefficient of the inner bulk region of the bed by 15%. The implementation of these improvements to the KTA correlation in a porous media model produced a radial velocity profile that saw significantly improved agreement with the LES results.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Improving mechanical properties of carbon and tool steels via chromizing

Steels are commonly used in high-performance demanding applications due to their favourable mechanical properties. Various surface engineering techniques have been developed for steels, among which chromizing is an affordable high-throughput case-hardenig process for improved surface hardness and wear resistance while retaining the substrate ductility and toughness. In this work, tribological testing along with nano- and micro-indentation and morphological and composional characterisation were used to understand the effects of the chromizing process on the AISI 1095 carbon steel, 52100 bearing steel and A2, D2 and M2 tool steels. The results of this study demonstrate that the chromizing treatment of low-cost 1095 and 52100 steels significantly improves their wear and hardness properties to a level comparable to the more costly tool steels. While chromizing also increased the hardness of the tool steels, it had little improvement on the wear resistance for the D2 and M2 tool steels.

36 MATERIALS SCIENCE↗

Improving luminescence response in ZnGeN 2 /GaN superlattices: defect reduction through composition control

Abstract Color-mixed (cm) light-emitting diodes (LEDs) are theoretically the most efficient white light emitters, projected to improve white light luminous efficacy by 34% compared to incumbent phosphor converted LEDs. Since white light technology is pervasive and essential, small improvements in LED technology can result in energy savings. However, cm-LEDs are not yet realized due to poor efficacy in green and amber emitting materials, a spectral region colloquially referred to as the Green Gap. ZnGeN 2 is nearly isostructural and closely lattice-matched to GaN and can be heteroepitaxially integrated with existing GaN devices; ZnGeN 2 /GaN hybrid structures are theorized to emit green (~530 nn) light with a spontaneous emission rate 4.6–4.9 times higher than traditional InGaN LEDs when incorporated into III-N LED structures. In this report we demonstrate the molecular beam epitaxy (MBE) growth of GaN and ZnGeN 2 superlattices, an important step towards realizing multiple quantum well structures required for efficient LEDs. Elemental analysis, including atom probe tomography, shows that Ga and Ge are observed in both ZnGeN 2 and GaN layers, degrading the structural uniformity. The lack of elemental abruptness also leads to increased defect luminescence and reabsorption of band edge luminescence. The source of unintentional Ga distributed throughout the ZnGeN 2 layers was identified as excess flux escaping from around the closed MBE shutter. The source of unintentional Ge, which tended to incorporate as a single delta-doped layer in GaN, was identified as Ge riding along the cyclical metal-rich Ga adlayer used for high quality GaN, incorporating during subsequent nitrogen-rich growth step. Modifying the growth strategy results in improved structural quality, elemental abruptness, and luminescence response. This realization of structurally and elementally abrupt interfaces demonstrates the potential of heteroepitaxially integrated binary and ternary nitrides for energy-relevant devices.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Methods of improving brain dose estimates for internally deposited radionuclides *

The US National Council on Radiation Protection and Measurements (NCRP) convened Scientific Committee 6–12 (SC 6–12) to examine methods for improving dose estimates for brain tissue for internally deposited radionuclides, with emphasis on alpha emitters. This Memorandum summarises the main findings of SC 6–12 described in the recently published NCRP Commentary No. 31, ‘Development of Kinetic and Anatomical Models for Brain Dosimetry for Internally Deposited Radionuclides’. The Commentary examines the extent to which dose estimates for the brain could be improved through increased realism in the biokinetic and dosimetric models currently used in radiation protection and epidemiology. A limitation of most of the current element-specific systemic biokinetic models is the absence of brain as an explicitly identified source region with its unique rate(s) of exchange of the element with blood. The brain is usually included in a large source region called Other that contains all tissues not considered major repositories for the element. In effect, all tissues in Other are assigned a common set of exchange rates with blood. A limitation of current dosimetric models for internal emitters is that activity in the brain is treated as a well-mixed pool, although more sophisticated models allowing consideration of different activity concentrations in different regions of the brain have been proposed. Here case studies for 18 internal emitters indicate that brain dose estimates using current dosimetric models may change substantially (by a factor of 5 or more), or may change only modestly, by addition of a sub-model of the brain in the biokinetic model, with transfer rates based on results of published biokinetic studies and autopsy data for the element of interest. As a starting place for improving brain dose estimates, development of biokinetic models with explicit sub-models of the brain (when sufficient biokinetic data are available) is underway for radionuclides frequently encountered in radiation epidemiology. A longer-term goal is development of coordinated biokinetic and dosimetric models that address the distribution of major radioelements among radiosensitive brain tissues.

61 RADIATION PROTECTION AND DOSIMETRY↗

Improving constraints on models addressing the Hubble tension with CMB delensing

The Hubble Tension is a well-known issue in modern cosmology that refers to the apparent disagreement in inferences of the Hubble constant H 0 as found through low-redshift observations and those derived from the ΛCDM model utilizing early universe observations. Several extensions to ΛCDM have been proposed to address the Hubble Tension that involve new ingredients or dynamics in the early universe. Reversing the effects of gravitational lensing on cosmic microwave background (CMB) maps produces sharper acoustic peaks in power spectra and allows for tighter constraints on cosmological parameters. We investigate the efficacy of CMB delensing for improving the constraints on parameters used in extensions of the ΛCDM model that are aimed at resolving the Hubble Tension (such as varying fundamental constants, contributions from early dark energy, and self-interacting dark radiation). We use Fisher forecasting to predict the expected constraints with and without this delensing procedure. We demonstrate that CMB delensing improves constraints on H 0 by ~ 20% for viable models and significantly improves constraints on parameters across the board in the low-noise regime.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Improving constraints on inflation with CMB delensing

Abstract The delensing of cosmic microwave background (CMB) maps will be increasingly valuable for extracting as much information as possible from future CMB surveys. Delensing provides many general benefits, including sharpening of the acoustic peaks, more accurate recovery of the damping tail, and reduction of lensing-inducedB-mode power. In this paper we present several applications of delensing focused on testing theories of early-universe inflation with observations of the CMB. We find that delensing the CMB results in improved parameter constraints for reconstructing the spectrum of primordial curvature fluctuations, probing oscillatory features in the primordial curvature spectrum, measuring the spatial curvature of the universe, and constraining several different models of isocurvature perturbations. In some cases we find that delensing can recover almost all of the constraining power contained in unlensed spectra, and it will be a particularly valuable analysis technique to achieve further improvements in constraints for model parameters whose measurements are not expected to improve significantly when utilizing only lensed CMB maps from next-generation CMB surveys. We also quantify the prospects of testing the single-field inflation tensor consistency condition using delensed CMB data; we find it to be out of reach of current and proposed experimental technology and advocate for alternative detection methods.

Astronomy & Astrophysics↗

Using active learning to improve quasar identification for the DESI spectra processing pipeline

The Dark Energy Spectroscopic Instrument (DESI) survey uses an automatic spectral classification pipeline to classify spectra. QuasarNET is a convolutional neural network used as part of this pipeline originally trained using data from the Baryon Oscillation Spectroscopic Survey (BOSS). In this paper we implement an active learning algorithm to optimally select spectra to use for training a new version of the QuasarNET weights file using only DESI data, with the goal of improving classification accuracy. This active learning algorithm includes a novel outlier rejection step using a Self-Organizing Map to ensure we label spectra representative of the larger quasar sample observed in DESI. We perform two iterations of the active learning pipeline, assembling a final dataset of 5600 labeled spectra, a small subset of the approximately 1.3 million quasar targets in DESI's Data Release 1. When splitting the spectra into training and validation subsets we achieve similar performance to the previously trained weights file in completeness and purity calculated on the validation dataset but do so with less than one tenth of the amount of training data. The new weights also more consistently classify objects in the same way when used on unlabeled data compared to the old weights file. In the process of improving QuasarNET's classification accuracy we discovered a systemic error in QuasarNET's redshift estimation and used our findings to improve our understanding of QuasarNET's redshifts.

Machine learning↗

Improving the stellarator through advances in plasma theory

Improvements to the stellarator concept can be realized through advancements in theoretical and computational plasma physics. Herein, recent advances are reported in the topical areas of: (1) improved energetic ion confinement, (2) the impact of three-dimensional (3D) shaping on turbulent transport, (3) reducing coil complexity, (4) novel optimization and design methods, and (5) computational magnetohydrodynamic tools. Furthermore, these advances enable the development of new stellarator configurations with improved confinement properties.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Structured large-pore foams improve thermal performance of LiMIT-style liquid lithium PFC

As magnetically confined fusion devices improve, the conditions at the walls become increasingly intense. Plasma facing components (PFCs) must withstand these extreme heat and particle loads without damage or degradation. Liquid lithium PFCs are known to be quite resilient, and the presence of lithium also serves to improve plasma properties. The liquid metal infused trench (LiMIT) concept is an open surface liquid lithium PFC design that has been tested extensively at the University of Illinois and in fusion devices around the world. LiMIT utilizes thermoelectric magnetohydrodynamics (TEMHD) to passively drive liquid lithium flow. This work demonstrates an extension of the LiMIT trench geometry to three dimensions. Additively manufactured large pore metallic foams maintain TEMHD drive while drastically improving heat flux handling and resistance to lithium dryout, a phenomenon where locally high TEMHD forces depresses the lithium level and exposes underlying solid structure. COMSOL multiphysics modeling of the system yields insight into the forces at play in dryout development, and shows the 3D structures can eliminate dryout. Here, low heat proof-of-concept experimental testing of the system matches computational results, and high heat flux electron beam tests more than double the proven operational range of a LiMIT-style PFC, to 6.8 MW m –2 , with no indications of dryout or impending damage.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Improved modeling of in-ice particle showers for IceCube event reconstruction

The IceCube Neutrino Observatory relies on an array of photomultiplier tubes to detect Cherenkov light produced by charged particles in the South Pole ice. IceCube data analyses depend on an in-depth characterization of the glacial ice, and on novel approaches in event reconstruction that utilize fast approximations of photoelectron yields. Here, a more accurate model is derived for event reconstruction that better captures our current knowledge of ice optical properties. When evaluated on a Monte Carlo simulation set, the median angular resolution for in-ice particle showers improves by over a factor of three compared to a reconstruction based on a simplified model of the ice. The most substantial improvement is obtained when including effects of birefringence due to the polycrystalline structure of the ice. When evaluated on data classified as particle showers in the high-energy starting events sample, a significantly improved description of the events is observed.

47 OTHER INSTRUMENTATION↗

Advancements and opportunities to improve bottom–up estimates of global wetland methane emissions

Wetlands are the single largest natural source of atmospheric methane (CH 4 ), contributing approximately 30% of total surface CH 4 emissions, and they have been identified as the largest source of uncertainty in the global CH 4 budget based on the most recent Global Carbon Project CH 4 report. High uncertainties in the bottom–up estimates of wetland CH 4 emissions pose significant challenges for accurately understanding their spatiotemporal variations, and for the scientific community to monitor wetland CH 4 emissions from space. In fact, there are large disagreements between bottom–up estimates versus top–down estimates inferred from inversion of atmospheric CH 4 concentrations. To address these critical gaps, we review recent development, validation, and applications of bottom–up estimates of global wetland CH 4 emissions, as well as how they are used in top–down inversions. These bottom–up estimates, using (1) empirical biogeochemical modeling (e.g. WetCHARTs: 125–208 TgCH 4 yr -1 ); (2) process-based biogeochemical modeling (e.g. WETCHIMP: 190 ± 39 TgCH 4 yr -1 ); and (3) data-driven machine learning approach (e.g. UpCH4: 146 ± 43 TgCH 4 yr -1 ). Bottom–up estimates are subject to significant uncertainties (~80 Tg CH 4 yr -1 ), and the ranges of different estimates do not overlap, further amplifying the overall uncertainty when combining multiple data products. These substantial uncertainties highlight gaps in our understanding of wetland CH 4 biogeochemistry and wetland inundation dynamics. Major tropical and arctic wetland complexes are regional hotspots of CH 4 emissions. However, the scarcity of satellite data over the tropics and northern high latitudes offer limited information for top–down inversions to improve bottom–up estimates. Recent advances in surface measurements of CH 4 fluxes (e.g. FLUXNET-CH 4 ) across a wide range of ecosystems including bogs, fens, marshes, and forest swamps provide an unprecedented opportunity to improve existing bottom–up estimates of wetland CH 4 estimates. We suggest that continuous long-term surface measurements at representative wetlands, high fidelity wetland mapping, combined with an appropriate modeling framework, will be needed to significantly improve global estimates of wetland CH 4 emissions. There is also a pressing unmet need for fine-resolution and high-precision satellite CH 4 observations directed at wetlands.

54 ENVIRONMENTAL SCIENCES↗

Improving seasonal precipitation forecasts in the Western United States through statistical downscaling

Abstract Seasonal precipitation forecasts in the western United States are critical resources for water resource management, especially during winter. While current seasonal forecasting systems provide monthly precipitation forecasts operationally, their coarse resolution limits their effectiveness in capturing the localized precipitation patterns and snowpack conditions essential for water resource managers in the mountainous regions. Here, analog statistical downscaling is demonstrated as an effective approach to enhance the spatial resolution of operational seasonal forecasts provided by the North American Multi-Model Ensemble. Downscaling was performed by building an analog ‘library’, in which corresponding model forecasts and observed values during the training period were stored. In the testing period, unseen model forecasts referenced the closest historical forecast from the analog library and applied the corresponding observational value for each point. This analysis indicates that downscaled products can capture localized features more accurately than the original coarse resolution forecasts, reducing forecast error across the western United States. Moreover, downscaling individual ensemble members—rather than downscaling the ensemble mean—further reduces forecasting error for their multi-model ensemble mean products. The greatest error reductions in the downscaled product, measured by root mean squared error (RMSE), were observed at low to mid-elevations (500–2000 meters), with 50%–70% improvement relative to the original forecasts. In the higher elevations (2000 meters and above), changes in RMSE relative to the original forecast were limited to 10%–30% improvements. The improvement is more substantial for forecast systems with 10 ensemble members compared to that with 4 members, but this relationship does not hold for the system with 24 ensemble members. These findings show that analog statistical downscaling can effectively address the spatial limitations of seasonal precipitation forecasts with minimal computational cost, providing a valuable framework for enhancing coarse resolution forecasting products while providing insights into the timing of ensemble mean calculations during the downscaling process.

Vernon, B. (ORCID:0009000891670689)↗

Improved Productivity with Multilaser Rotary Powder Bed Fusion Additive Manufacturing

Laser powder bed fusion (LPBF) enables the fabrication of intricate, geometrically complex structures with a sufficiently fine surface finish for many engineering applications with a diversity of available feedstock metals. However, the production rate of LPBF systems is not well suited for mass production in comparison to traditional manufacturing methods. LPBF systems measure their deposition rates in 100's of grams per hour, while other processes measure in kilograms per hour or even in the case of processes such as forming, stamping, and casting, 100's of kilograms per hour. To be widely adopted in industry for mass production, LPBF requires a new scalable architecture that enables many orders of magnitude improvement in deposition rate, while maintaining the geometry freedom of additive manufacturing. This article explores concepts that could achieve as much as four orders of magnitude increase in the production rate through the application of (1) rotary table kinematic arrangements; (2) a dramatic number of simultaneously operating lasers; (3) reductions of laser optic size; (4) improved scanning techniques; and (5) an optimization of toroidal build plate size. To theoretically demonstrate the possibilities of production improvements, a productivity analysis is proposed for synchronous reluctance motors with relevance to the electric vehicle industry, given the recent increase in the diversity of printable soft magnetic alloys. The analysis provides insights into the impact of the architecture and process parameters necessary to optimize rotary powder bed fusion for mass production.

36 MATERIALS SCIENCE↗

Improved genome editing by an engineered CRISPR-Cas12a

CRISPR-Cas12a is an RNA-guided, programmable genome editing enzyme found within bacterial adaptive immune pathways. Unlike CRISPR-Cas9, Cas12a uses only a single catalytic site to both cleave target double-stranded DNA (dsDNA) (cis-activity) and indiscriminately degrade single-stranded DNA (ssDNA) (trans-activity). To investigate how the relative potency of cis- versus trans-DNase activity affects Cas12a-mediated genome editing, we first used structure-guided engineering to generate variants of Lachnospiraceae bacterium Cas12a that selectively disrupt trans-activity. The resulting engineered mutant with the biggest differential between cis - and trans -DNase activity in vitro showed minimal genome editing activity in human cells, motivating a second set of experiments using directed evolution to generate additional mutants with robust genome editing activity. Notably, these engineered and evolved mutants had enhanced ability to induce homology-directed repair (HDR) editing by 2–18-fold compared to wild-type Cas12a when using HDR donors containing mismatches with crRNA at the PAM-distal region. Finally, a site-specific reversion mutation produced improved Cas12a (iCas12a) variants with superior genome editing efficiency at genomic sites that are difficult to edit using wild-type Cas12a. This strategy establishes a pipeline for creating improved genome editing tools by combining structural insights with randomization and selection. The available structures of other CRISPR-Cas enzymes will enable this strategy to be applied to improve the efficacy of other genome-editing proteins.

59 BASIC BIOLOGICAL SCIENCES↗

Perspectives on improving photosynthesis to increase crop yield

Abstract Improving photosynthesis, the fundamental process by which plants convert light energy into chemical energy, is a key area of research with great potential for enhancing sustainable agricultural productivity and addressing global food security challenges. This perspective delves into the latest advancements and approaches aimed at optimizing photosynthetic efficiency. Our discussion encompasses the entire process, beginning with light harvesting and its regulation and progressing through the bottleneck of electron transfer. We then delve into the carbon reactions of photosynthesis, focusing on strategies targeting the enzymes of the Calvin–Benson–Bassham (CBB) cycle. Additionally, we explore methods to increase carbon dioxide (CO2) concentration near the Rubisco, the enzyme responsible for the first step of CBB cycle, drawing inspiration from various photosynthetic organisms, and conclude this section by examining ways to enhance CO2 delivery into leaves. Moving beyond individual processes, we discuss two approaches to identifying key targets for photosynthesis improvement: systems modeling and the study of natural variation. Finally, we revisit some of the strategies mentioned above to provide a holistic view of the improvements, analyzing their impact on nitrogen use efficiency and on canopy photosynthesis.

59 BASIC BIOLOGICAL SCIENCES↗