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All sourcesNASA NTRSDOE OSTI
NASA NTRSDate not supplied

Impact of Stress-Activated Positive Holes on the Redox Timing in Organisms Living at the Surface of Rocks: Unlocking Nature's Secrets

Squeezing and deforming igneous and/or high-grade metamorphic rocks activates electronic charge carriers known as positive holes, h•, that are defect electrons in the O2– sublattice. Similar to h• in semiconductors the h• in rocks affect electrical and thermal properties. They produce electrochemical reactions, localized electrical signals, and currents. In this study, we explore the effects of positive holes on the electron flow in the electron transport chain (ETC) of organisms living at the surface of rocks such as gabbro or granite. We found that positive holes, h•, disrupt the temporal coordination in vivo governed by oscillating reduction-oxidation reactions, known as the redox cycle. Positive holes affect the timing of the redox cycle by interacting with molecules in vivo, leading to the formation of superoxide anions and hydroxyl radicals. Thus, we observed that positive holes significantly impede the growth of yeast Saccharomyces cerevisiae (i.e., colony size) and delay the sprouting of broccoli and chia seeds. Additionally, positive holes were found to exert discernible impacts on plant development such as stem length and leaf size. Our findings highlight the intricate interplay between positive holes, redox timing, and biological processes, shedding light on the potentially significant role of positive holes in influencing the growth and development of organisms in tectonically stressed rock environments. Understanding these effects has implications for a broader understanding of redox biology and of how environmental factors can influence cellular development in natural settings.

Redox Timing in Organisms↗
NASA NTRSDate not supplied

Tropospheric Ozone in the NASA GEOS Model: Effects of Satellite NO2 Data Assimilation and Improvements in Background NOx Chemistry

Tropospheric ozone is a major atmospheric oxidant, the primary source of the hydroxyl radical, and a greenhouse gas. In the troposphere, it is produced from the oxidation of carbon monoxide and volatile organic compounds in the presence of nitrogen oxides (NOx=NO+NO2) or has its origins in the stratosphere. The tropospheric ozone burdens in global atmospheric chemistry models disagree by a factor of 1.5, indicating an incomplete understanding of ozone sources and sinks. Here we examine the tropospheric ozone simulation in NASA Global Modeling and Assimilation Office’s (GMAO’s) GEOS model with the GEOS-Chem chemistry mechanism (version 14.2), using observations from satellites, aircraft, ozonesondes, and surface sites. This modeling framework is used to produce GMAO’s GEOS Composition Forecasts (GEOS-CF), and it has been updated extensively with new emission inventories, improved model physics, satellite data assimilation capability, and an up-to-date chemical mechanism that includes tropospheric halogen chemistry and NOx recycling from particulate nitrate. Earlier versions of the model using GEOS-Chem version 12.0 showed an underestimate in tropospheric ozone in the northern hemisphere. We evaluate the ozone simulation in the updated model, focusing on the effects of assimilating satellite NO2 data from the Ozone Monitoring Instrument (OMI), constraining stratospheric ozone to satellite data, and updates to the NOx chemistry. We will examine changes in the vertical profiles of tropospheric ozone over the US in support of the Tropospheric Emissions: Monitoring of Pollution (TEMPO), and discuss implications for the tropospheric ozone budget.

V. Shah↗
NASA NTRSDate not supplied

GOES-16 GLM Observations for National Climate Assessments

The heating of air by a lightning discharge, followed by rapid cooling, leads to the production of lightning nitrogen oxides (“LNO x ” for brevity, where NO x = NO + NO 2 ). The LNO x are important trace gases because they control the concentration of the greenhouse gas ozone (O 3 ) and the highly reactive hydroxyl radicals (OH). In fact, LNO x are the most important source of NO x in the upper troposphere at tropical and subtropical latitudes, and climate is most sensitive to O 3 in the upper troposphere. Since lightning indirectly influences the Earth's climate, it is a key variable to monitor in National Climate Assessment (NCA) studies. In this work, GOES-16 Geostationary Lightning Mapper (GLM) flash counts and flash optical properties (i.e., optical energy, optical area, …) that are linked to LNO x production are examined in detail for the continental United States analysis region, and are compared with ground-based National Lightning Detection Network (NLDN) observations.

Lightning↗
NASA NTRS2023

An Observation-Based, Reduced-Form Model for Oxidation in the Remote Marine Troposphere

The hydroxyl radical (OH) fuels atmospheric chemical cycling as the main sink for methane and a driver of the formation and loss of many air pollutants, but direct OH observations are sparse. We develop and evaluate an observation-based proxy for short term, spatial variations in OH (Proxy OH ) in the remote marine troposphere using unprecedented and comprehensive measurements from the NASA Atmospheric Tomography (ATom) airborne campaign. Proxy OH is a reduced form of the OH steady-state equation representing the dominant OH production and loss pathways in the remote marine troposphere, according to box model simulations of OH constrained with ATom observations. Proxy OH comprises only eight variables that are generally observed by routine ground- or satellite-based instruments. ProxyOH scales linearly with in situ [OH] spatial variations along the ATom flight tracks (median r 2 = 0.90, interquartile range = 0.80 – 0.94 across 2 km altitude by 20° latitudinal regions). We deconstruct spatial variations in Proxy OH as a first-order approximation of the sensitivity of OH variations to individual terms. Two terms modulate within-region Proxy OH variations—water vapor (H 2 O) and, to a lesser extent, nitric oxide (NO). This implies that a limited set of observations could offer a novel avenue for observation-based mapping of OH spatial variations over much of the remote marine troposphere. Both H 2 O and NO are expected to change with climate, while NO also varies strongly with human activities. We also illustrate the utility of Proxy OH as a process-based approach for evaluating inter-model differences in remote marine tropospheric OH.

Colleen B. Baublitz↗
NASA NTRSDate not supplied

Enhancing Long-Term Trend Simulation of OH Through the Synergy of Model Simulations and Aura Ozone Monitoring Instrument (OMI) NO 2 and HCHO Retrievals

During the last few years, tremendous progress has been made to develop an efficient parameterization module using agile machine learning techniques. The aim of this module is to provide dynamic response of the tropospheric hydroxyl radical (OH) to its major drivers, including trace gases, aerosols, clouds, and meteorology. This module, named ECCOH (pronounced “echo”) and implemented in NASA’s GEOS-5 global model, offers an unrealized opportunity to unravel the convoluted response of OH to its underlying drivers while approaching the accuracy of full-chemistry without incurring excessive computational costs, making it suitable for climate models. However, the accurate representation of OH in ECCOH poses challenges due to the lack of representation of some of its critical inputs such as the abundance of NO 2 and HCHO concentrations. As such, we leverage the well-characterized satellite observations of NO2 and HCHO columns from Aura OMI to enhance their representation in ECCOH using an optimal interpolation method for the time period of 2005 - present. We show how the inclusion of OMI information can affect the spatiotemporal variability and long-term trends of OH, CO, and CH 4 across the globe. Additionally, we underscore the necessity of obtaining high-fidelity information regarding tropospheric ozone from the southern hemisphere from space, a region currently lacking full verification in models, posing a challenge to get a reasonable amount of chemical sink for CH 4 .

OH↗
NASA NTRSDate not supplied

Impact of Stress-Activated Positive Holes on the Redox Timing in Organisms Living at the Surface of Rocks: Unlocking Nature's Secrets

Stressing and deforming igneous and/or high-grade metamorphic rocks activates electronic charge carriers known as positive holes, h•, that are defect electrons in the O2–sublattice, e.g. O-states. Like h•in semiconductors, the h•in rocks affect electrical and thermal properties. They produce electrochemical reactions, localized electrical signals, and currents. In this study, we explore the effects of positive holes on the electron flow in the electron transport chain (ETC) of organisms living at the surface of rocks such as gabbro or granite. We found that positive holes, h•, disrupt the in vivotemporal coordination governed by oscillating reduction-oxidation reactions, known as the redox cycle. Positive holes affect the timing of the redox cycle by interacting with essentialmolecules in vivo, leading to the formation of hydroxyl radicals and superoxide anions. We observed that positive holes significantly impede the growth of yeast Saccharomyces cerevisiae(i.e., colony size) and delay the sprouting of broccoli seeds. Additionally, positive holes were found to exert discernible impacts on plant development such as stem length and leaf size. Our findings highlight the intricate interplay between positive holes, redox timing, and biological processes, shedding light on the potentially significant role of positive holes in influencing the growth and development of organisms in tectonically stressed crustal environments. Understanding these effects has implications for a broader understanding of redox biology and of how environmental factors can influence cellular development in natural settings.

hypermutation↗
NASA NTRSDate not supplied

Tropospheric Ozone in the NASA GEOS Model: Effects of Satellite Data Assimilation and Improvements in Background NO x Chemistry

Tropospheric ozone is a major atmospheric oxidant, the primary source of the hydroxyl radical, and a greenhouse gas. In the troposphere, it is produced from the oxidation of carbon monoxide and volatile organic compounds in the presence of nitrogen oxides (NO x =NO+NO 2 ) or has its origins in the stratosphere. The tropospheric ozone burdens in global atmospheric chemistry models disagree by a factor of 1.5, indicating an incomplete understanding of ozone sources and sinks. Here we examine the tropospheric ozone simulation in NASA Global Modeling and Assimilation Office’s (GMAO’s) GEOS model with the GEOS-Chem chemistry mechanism (version 14.2), using observations from satellites, aircraft, ozonesondes, and surface sites. This modeling framework is used to produce GMAO’s GEOS Composition Forecasts (GEOS-CF), and it has been updated extensively with new emission inventories, improved model physics, satellite data assimilation capability, and an up-to-date chemical mechanism that includes tropospheric halogen chemistry and NOx recycling from particulate nitrate. Earlier versions of the model using GEOS-Chem version 12.0 showed an underestimate in tropospheric ozone in the northern hemisphere. We evaluate the ozone simulation in the updated model, focusing on the effects of assimilating satellite NO 2 data from the Ozone Monitoring Instrument (OMI), constraining stratospheric ozone to satellite data, and updates to the NOx chemistry. We will examine changes in the vertical profiles of tropospheric ozone over the US in support of the Tropospheric Emissions: Monitoring of Pollution (TEMPO), and discuss implications for the tropospheric ozone budget.

Viral Shah↗
NASA NTRS2015

A Faster Triphosphorylation Ribozyme

In support of the RNA world hypothesis, previous studies identified trimetaphosphate (Tmp) as a plausible energy source for RNA world organisms. In one of these studies, catalytic RNAs (ribozymes) that catalyze the triphosphorylation of RNA 5'-hydroxyl groups using Tmp were obtained by in vitro selection. One ribozyme (TPR1) was analyzed in more detail. TPR1 catalyzes the triphosphorylation reaction to a rate of 0.013 min -1 under selection conditions (50 mM Tmp, 100 mM MgCl 2 , 22°C). To identify a triphosphorylation ribozyme that catalyzes faster triphosphorylation, and possibly learn about its secondary structure TPR1 was subjected to a doped selection. The resulting ribozyme, TPR1e, contains seven mutations relative to TPR1, displays a previously unidentified duplex that constrains the ribozyme's structure, and reacts at a 24-fold faster rate than the parent ribozyme. Under optimal conditions (150 mM Tmp, 650 mM MgCl 2 , 40°C), the triphosphorylation rate of TRP1e reaches 6.8 min -1 .

Gregory F. Dolan↗
NASA NTRS2016

Lower temperature optimum of a smaller, fragmented triphosphorylation ribozyme

The RNA world hypothesis describes a stage in the early evolution of life in which catalytic RNAs mediated the replication of RNA world organisms. One challenge to this hypothesis is that most existing ribozymes are much longer than what may be expected to originate from prebiotically plausible methods, or from the polymerization by currently existing polymerase ribozymes. We previously developed a 96-nucleotide long ribozyme, which generates a chemically activated 5'-phosphate (a 5'-triphosphate) from a prebiotically plausible molecule, trimetaphosphate, and an RNA 5'-hydroxyl group. Analogous ribozymes may have been important in the RNA world to access an energy source for the earliest life forms. Here we reduce the length of this ribozyme by fragmenting the ribozyme into multiple RNA strands, and by successively removing its longest double strand. The resulting ribozyme is composed of RNA fragments with none longer than 34 nucleotides. The temperature optimum was ~20°C, compared to ~40°C for the parent ribozyme. This shift in temperature dependence may be a more general phenomenon for fragmented ribozymes, and may have helped RNA world organisms to emerge at low temperature.

Arvin Akoopie↗
NASA NTRS2024

Post-Synthetic Modification of Yttria-Stabilized Zirconia Aerogels with Silica Coatings for Enhanced Thermal Stability

Maintaining high surface area and porosity at high temperatures is important when considering aerogels for use in thermal management systems. The mesoporous structure of aerogels results in extremely low thermal conductivity, making them lightweight, high performance insulating materials. Maintaining these properties requires innovative routes to suppress sintering and pore collapse as use temperatures rise. The current work aims to improve the pore structure stability of yttria-stabilized zirconia aerogels by the addition of a SiO 2 coating. The functionalization of surface hydroxyl groups by the addition of SiO 2 is hypothesized to mitigate condensation reactions, which are a driving force for shrinkage and pore structure collapse. Zirconia aerogels with 0, 10 and 30 mol% yttria (YO 1.5 ) additions were coated in a tetraethyl orthosilicate (TEOS) solution and exposed to temperatures up to 1200°C. Crystal structure, pore structure, and aerogel morphology were investigated to understand changes in aerogel thermal stability. The SiO 2 coating exhibited a greater influence on pore stability over yttria concentration, with specific surface area of the coated aerogels being twice that of the uncoated aerogels up to 1000°C. However, the presence of the SiO 2 coating promoted rapid sintering and densification at 1200°C, establishing an upper use temperature for SiO 2 and a need to develop other coating chemistries.

aerogel↗
NASA NTRSDate not supplied

Fundamental Regolith Properties, Handling and Water Capture (FLEET) Project Update

The FLEET project, begun in FY21, was designed to research several concepts for components and subsystems needed for extracting water from planetary ice deposits. This is one of two approaches for providing water off-Earth for direct use and also for feedstock to manufacture spacecraft propellants. The other approach is to extract lattice-bound water and hydroxyl from the minerals that make up the solid grains of rock and regolith. The ultimate intent is to integrate the findings with other efforts, such as, in the creation of complete water-from-ice production systems for various down-stream uses. The project consists of several elements, now in various stages of completion. They are presented here in the approximate order they would generally be applied to a water-extraction system: Digging icy regolith, transporting it, capturing water vapor, and sealing chambers from the outer environment.

L Gertsch↗
NASA NTRSDate not supplied

Fundamental Regolith Properties, Handling and Water Capture (FLEET) Update

The FLEET project, begun in FY21, was designed to research several concepts for components and subsystems needed for extracting water from planetary ice deposits. This is one of two approaches for providing water off-Earth for direct use and also for feedstock to manufacture spacecraft propellants. The other approach is to extract lattice-bound water and hydroxyl from the minerals that make up the solid grains of rock and regolith. The ultimate intent is to integrate the findings with other efforts, such as, in the creation of complete water-from-ice production systems for various down-stream uses. The project consists of several elements, now in various stages of completion. They are presented here in the approximate order they would generally be applied to a water-extraction system: Digging icy regolith, transporting it, capturing water vapor, and sealing chambers from the outer environment.

regolith excavation↗
NASA NTRSDate not supplied

Stress-Activated Positive Holes (O− in a Matrix of O2–) Cause DNA Damage in Surface-Dwelling Organisms: Unveiling Mutation-Induced Secrets of Nature

Peroxy defects consist of pairs of tightly bonded oxygen anions in the –1 valence state such as in O3X/OO\YO3 with X, Y = Si4+, Al3+ etc. They commonly occur in igneous, metamorphic and many sedimentary rocks. When such rocks are stressed by tectonic forces, peroxy defects break up, releasing highly mobile electronic charge carriers: defect electrons in the O2– sublattice, i.e. unbound O–, known as “positive holes”, h•. The h• can flow out of stressed rock volumes, spreading far and wide, causing electric currents and electrochemical reactions. This study explores how the h• impact the electron flow in the electron transport chain (ETC) of organisms on the surface of rocks such as gabbro and granite. We found that, by forming hydroxyl radicals and superoxide anions, the h• disrupt the in vivo coordination of reduction-oxidation reactions that are essential for the timing of the redox cycle. Our observations show that stress activation of h• delays the sprouting of certain plant seeds and impedes the growth of yeast cultures, Saccharomyces cerevisiae. The h• induce mutations and affect plant development as evidenced by reduced stem length and leaf size. At the same time, the h• serve as a source of abiotic oxidation, capable of forming various organic compounds in situ. Through the generation of radical species that create new carbon-carbon bonds the h• facilitate the abiotic synthesis of hydrocarbons and other organic molecules essential to life, including porphyrins. Our findings highlight the intricate interplay between positive holes, redox timing, and biological processes, revealing their significant role in influencing the growth and development of organisms in tectonically stressed crustal environments. Understanding these effects enhances our broader comprehension of redox biology and the influence of environmental factors on cellular development in natural settings.

astrobiology↗
NASA NTRS2024

Stratospheric Air Intrusions Promote Global-Scale New Particle Formation

New particle formation in the free troposphere is a major source of cloud condensation nuclei globally. The prevailing view is that in the free troposphere, new particles are formed predominantly in convective cloud outflows. We present another mechanism using global observations. We find that during stratospheric air intrusion events, the mixing of descending ozone-rich stratospheric air with more moist free tropospheric background results in elevated hydroxyl radical (OH) concentrations. Such mixing is most prevalent near the tropopause where the sulfur dioxide (SO 2 ) mixing ratios are high. The combination of elevated SO 2 and OH levels leads to enhanced sulfuric acid concentrations, promoting particle formation. Such new particle formation occurs frequently and over large geographic regions, representing an important particle source in the midlatitude free troposphere.

Jiaoshi Zhang↗
NASA NTRSDate not supplied

Dependence of Lightning Cloud-Top Optical Emissions on Channel Characteristics Using Boltzmann Radiative Transfer Modeling

With an estimated global flash rate of 46 lightning per second, a significant amount of lightning nitrogen oxides (LNOx) are produced within the climate system. In turn, LNOx affect the concentrations of ozone (O 3 , an important greenhouse gas) as well as the very reactive hydroxyl radicals (OH, that affect all greenhouse gases). Thus, space-based estimation of LNOx is highly sought [Koshak 2017; Koshak et al. (2015)]. Total lightning channel length, L , is a proxy for the total flash energy (and hence LNOx production). Geostationary lightning mappers provide cloud-top 2D views of the diffuse (i.e., blurry) optical images of lightning, thereby making it difficult to determine L (and other channel features). Transient Boltzmann radiative transfer modeling is applied here to investigate the dependence of the spatio-temporal pattern of cloud-top lightning optical emissions on L and other channel characteristics (e.g., orientation, propagation direction, amplitude, location, ...).

William J Koshak↗
NASA NTRSDate not supplied

Linking OH Variability to Observable Variables, Meteorology and Transport

The hydroxyl radical (OH) plays a vital role in tropospheric chemistry, as it provides the dominant sink for a multitude of pollutants and climate-relevant gases such as methane. Observational constraints on the global distribution and temporal variability of OH are limited, and models simulate a wide range of OH distributions. While OH itself has a short atmospheric lifetime, OH is photochemically coupled to longer-lived species that undergo atmospheric transport. Here, we investigate how much of the OH variability within and between models can be explained by differences in observable species to develop diagnostics for OH differences. We find that NO 2 and water vapor together explain much of the spatial and temporal variability in simulated OH, and we use satellite observations to identify biases in these variables. The OH response to ENSO also differs between models, and we investigate potential causes of these differences such as differences in convection or lightning NOx. We also explore the potential of idealized tracers to represent the OH distribution. Within a single model, meteorological variables such as humidity and idealized tracers of transport can explain a significant portion of the OH spatial variability. We use a Gradient Boosted Regression Trees, a type of machine learning, to account for non-linear relationships between OH and the input variables.

Meteorology↗