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At least 631 records · Page 35

OH/IR stars near the Galactic Center: Pulsation periods, luminosities, and polarimetry

17 stars in the direction of the Galactic Center, 15 of which are OH/IR stars, have been monitored at infrared wavelengths over a period of nearly eight years. Pulsation periods, bolometric luminosities, and light curves for 14 OH/IR stars are presented. The Galactic Center OH/IR stars range in luminosity between M(sub Bol) = -4.5 to M(sub Bol) = -6, implying main sequence progenitors with masses less than 3 solar mass. When compared to optically visible long period variables in the Large Magellanic Cloud (LMC) with similar bolometric luminosities, the Galactic Center OH/IR stars have pulsation periods on average 30% longer. This shift to longer periods is consistent with the current picture of late asymptotic giant branch evolution, placing the OH/IR stars in a phase immediately following the optically visible Mira variable phase during which the star dramatically increases its mass loss rate, becoming invisible at optical wavelength. Infrared polarimetry of 11 of the stars is also presented. The polarization for all of the stars is consistent with purely interstellar polarization, with little evidence for a significant intrinsic component. When compared to OH/IR stars in the galactic plane, the Galactic Center OH/IR stars appear similar in photometric characteristics, except none of the Galactic Center OH/IR stars shows the extremely thick dust shells or very high intrinsic polarization found in the more extreme galactic plane OH/IR stars.

Jones, Terry Jay↗

DKRZ workload analysis

The UniTree product as it is released emits a rather large amount of logging information into various log files, but this data typically is meant for operator information in difficult operational situations or directly for debugging purposes. It is strongly advised that the existing logging functionality in the standard release is advanced by adding messages with relevant parameters for every major event in the course of executing file or device oriented requests as described. This upgrade would be relatively easy in terms of implementation effort. The benefit is a complete sequence of transaction descriptions generated by external user requests or by internal administration commands. This collection of transaction records can be used for intensive statistics and performance evaluations. It is furthermore a perfect source to drive realistic system simulations to study the effects of possible hardware or software changes.

Fichter, Hartmut↗

GL4U: GeneLab for Colleges and Universities

GeneLab for Colleges and Universities (GL4U) will provide space biology-relevant training in bioinformatics to the next generation of scientists through direct and indirect approaches. The GeneLab (GL) team will host two annual data processing bootcamps, one for college-level students (direct) and one for college educators (indirect – Training of Trainers), in which participants learn to analyze space-relevant omics data hosted on GL. The first bootcamp took place in early June 2021 with about 30 SJSU undergraduate students and covered space biology-specific lectures and hands-on instruction using Jupyter Notebooks (JNs) for RNA sequence (RNAseq) data analysis. All training materials including the enclosed files listed below will be made publicly available on GitHub. RNAseq Bootcamp Lectures (attached in combined file): Introduction to NASA, Space Biology, GeneLab, and the Command Line: NASA_GL_CL_Intro_FINAL.pdf - DRAFT from initial submission NASA_SB_GL_CL_Intro_FULL.pdf - FINAL version presented during the bootcamp - only minor edits from the draft version RNAseq and Data Processing Overview: RNAseq_Overview_FINAL.pdf - DRAFT from initial submission RNAseq_Overview_FULL.pdf - FINAL version presented during the bootcamp - only minor edits from the draft version Overview of the Statistics Used for RNAseq Data Analysis: SJSU_Statistics_Intro_Lecture_FINAL.pdf - DRAFT from initial submission Statistics_Overview_FULL.pdf - FINAL version presented during the bootcamp - only minor edits from the draft version Completed JNs in HTML format (attached in combined file): Unix_Intro_JN_06-2021_completed.html R_Intro_JN_06-2021_completed.html RNAseq_fastq_to_counts_JN_06-2021_completed.html RNAseq_DGE_JN_06-2021_completed.html RNAseq Bootcamp Recordings (attached): GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day1_Part_1_of_5.mp4 GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day1_Part_2_of_5.mp4 GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day1_Part_3_of_5.mp4 *There were issues with the part 4 recording so that is not available GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day1_Part_5_of_5.mp4 GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day2_Part_1_of_3.mp4 GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day2_Part_2_of_3.mp4 GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day2_Part_3_of_3.mp4 GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day3_Part_1_of_4.mp4 GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day3_Part_2_of_4.mp4 GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day3_Part_3_of_4.mp4 GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day3_Part_4_of_4.mp4 GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day4_Part_1_of_4.mp4 GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day4_Part_2_of_4.mp4 GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day4_Part_3_of_4.mp4 GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day4_Part_4_of_4.mp4 GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day5_Part_1_of_4.mp4 GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day5_Part_2_of_4.mp4 GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day5_Part_3_of_4.mp4 GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day5_Part_4_of_4.mp4

GeneLab↗

The peculiar object HD 44179 /'The red rectangle'/

A strong infrared source detected in the AFCRL sky survey is confirmed, and is identified with the binary star HD 44179, embedded in a peculiar nebula. UBVRI and broad-band photometry between 2.2 and 27 microns are combined with blue, red, and near-infrared spectra, polarimetry and spectrophotometry of the star, and a range of direct and image-tube photographs of the nebula, to suggest a composite model of the system. In this model, the infrared radiation derives from thermal emission by dust grains contained in a disklike geometry about the central object, which appears to be of spectral type B9-A0 III and which may be in pre-main-sequence evolution. Two infrared emission features are found, peaking at 8.7 and 11.3 microns, the latter corresponding to the feature seen in the spectrum of the planetary nebula NGC 7027. The complex nebular structure is discussed on the basis of photographs through narrow-band continuum and emission-line filters. The polarization data support the suggestion of a disk containing some large particles. No radio continuum emission is detected.

Cohen, M.↗

Software Development Technologies for Reactive, Real-Time, and Hybrid Systems: Summary of Research

This research is directed towards the implementation of a comprehensive deductive-algorithmic environment (toolkit) for the development and verification of high assurance reactive systems, especially concurrent, real-time, and hybrid systems. For this, we have designed and implemented the STCP (Stanford Temporal Prover) verification system. Reactive systems have an ongoing interaction with their environment, and their computations are infinite sequences of states. A large number of systems can be seen as reactive systems, including hardware, concurrent programs, network protocols, and embedded systems. Temporal logic provides a convenient language for expressing properties of reactive systems. A temporal verification methodology provides procedures for proving that a given system satisfies a given temporal property. The research covered necessary theoretical foundations as well as implementation and application issues.

Manna, Zohar↗

Analysis of Adult Female Mouse (Mus musculus) Group Behavior on the International Space Station (ISS)

As interest in long duration effects of space habitation increases, understanding the behavior of model organisms living within the habitats engineered to fly them is vital for designing, validating, and interpreting future spaceflight studies. A handful of papers have previously reported behavior of mice and rats in the weightless environment of space. The Rodent Research Hardware and Operations Validation (Rodent Research-1; RR1) utilized the Rodent Habitat (RH) developed at NASA Ames Research Center to fly mice on the ISS (International Space Station). Ten adult (16-week-old) female C57BL/6 mice were launched on September 21st, 2014 in an unmanned Dragon Capsule, and spent 37 days in microgravity. Here we report group behavioral phenotypes of the RR1 Flight (FLT) and environment-matched Ground Control (GC) mice in the Rodent Habitat (RH) during this long-duration flight. Video was recorded for 33 days on the ISS, permitting daily assessments of overall health and well-being of the mice, and providing a valuable repository for detailed behavioral analysis. We previously reported that, as compared to GC mice, RR1 FLT mice exhibited the same range of behaviors, including eating, drinking, exploration, self- and allo-grooming, and social interactions at similar or greater levels of occurrence. Overall activity was greater in FLT as compared to GC mice, with spontaneous ambulatory behavior, including organized 'circling' or 'race-tracking' behavior that emerged within the first few days of flight following a common developmental sequence, and comprised the primary dark cycle activity persisting throughout the remainder of the experiment. Participation by individual mice increased dramatically over the course of the flight. Here we present a detailed analysis of 'race-tracking' behavior in which we quantified: (1) Complete lap rotations by individual mice; (2) Numbers of collisions between circling mice; (3) Lap directionality; and (4) Recruitment of mice into a group phenotype. This analysis contributes to the first NASA long-duration study of rodent behavior, providing evidence for the emergence of a distinctive, organized group behavior unique to the weightless space environment.

Behavior in Space↗

The Star Formation History of Orion and its Environs

During the Winter and Fall 2001 observing campaigns, we obtained multifilter photometry using the Quest camera on the 1mt Schmidt of the Venezuelan National Observatory, to continue the survey of the Orion clouds. In the Winter 2001 season, we obtained photometry for 9 scans at DEC=+5, 3 scans at DEC=-5, and 2 scans at DEC=-3, while 2 additional scans at DEC=-3 were obtained during the Fall 2001 observing campaign (the width of each scan is 2.3 arc minutes). The photometric survey has not been completed this season because the instrument was damaged by lightening on Sep 2001 and operations were suspended until Dec 2001. Observations are still under way. Nonetheless, we have enough scans at -3 and +5 to start selecting candidates for spectroscopic follow up on the next season. Spectra of more than 300 objects was obtained with the FAST spectrograph on the Mt Hopkins 48 inch telescope during observing campaigns Jan-March 2001, and Oct-Dec 2001. Bad weather prevented observations with Hydra on the WIYN telescope on KPNO in Jan 2001. The FAST spectra are been analyzed to select the young population of the regions. Observations in the JHKL bands were obtained for a sample of 20-30 objects in Ori Ia and Ib from scan centered at DEC=-l, with the StellIRCam on the Mt Hopkins 48 inch telescope on Nov 2001. L band observations will be effective for picking up objects surrounded by accretion disks, in which inner disk holes prevent having any excess at shorter wavelength bands. Observations at 10 micrometers and 18 micrometers were obtained in que mode for a sample of 20 objects in Ori Ia and Ib in the same regions as the near IR photometry with the Gemini-South telescope. These new data is presently been reduced and analyzed, together with data from the observing campaigns of 2000. Analysis of Hydra fields at strips centered at DEC=-1 and +1 have confirmed 105 more candidates as low mass pre-main sequence objects. In addition, every target was detected at 10 micrometers and a few at 18 micrometers. With these data, combined with our optical and JHKL photometry, we will construct spectral energy distributions. This will allow us to begin studying the structure of disks around low mass T Tauri stars in the distributed population of the Orion clouds, for direct comparison with that of Taurus. Ours is the first determination of the infrared emission of protoplanetary disks around low mass stars in the Orion region.

Calvet, Nuria↗

Comprehensive Oculomotor Behavioral Response Assessment (COBRA)

An eye movement-based methodology and assessment tool may be used to quantify many aspects of human dynamic visual processing using a relatively simple and short oculomotor task, noninvasive video-based eye tracking, and validated oculometric analysis techniques. By examining the eye movement responses to a task including a radially-organized appropriately randomized sequence of Rashbass-like step-ramp pursuit-tracking trials, distinct performance measurements may be generated that may be associated with, for example, pursuit initiation (e.g., latency and open-loop pursuit acceleration), steady-state tracking (e.g., gain, catch-up saccade amplitude, and the proportion of the steady-state response consisting of smooth movement), direction tuning (e.g., oblique effect amplitude, horizontal-vertical asymmetry, and direction noise), and speed tuning (e.g., speed responsiveness and noise). This quantitative approach may provide fast and results (e.g., a multi-dimensional set of oculometrics and a single scalar impairment index) that can be interpreted by one without a high degree of scientific sophistication or extensive training.

Stone, Leland S.↗

Analogy Between the Collatz Conjecture and Sliding Mode Control

The Collatz Conjecture is a famous mathematics problem that is simple to state and understand but remains unsolved. In this paper, the problem is recast as a discrete-time nonlinear system. and viewed in a new light from the perspective of nonlinear systems and feedback control theory. In particular, connections are made between the Collatz sequence of numbers and the behavior of closed-loop dynamical systems designed using a feedback control method called sliding mode control. Trajectories of such systems are characterized by a reaching phase and a sliding phase, the latter of which exhibits exponential convergence. As sliding mode control design is rooted in Lyapunov stability theory, the analogy suggests a new direction for proving or disproving the Collatz Conjecture. Although several possible approaches are discussed, no formal proof is given in this paper.

Collatz conjecture↗

A Combined Very Large Telescope and Gemini Study of the Atmosphere of the Directly Imaged Planet, Beta Pictoris b

We analyze new/archival VLT/NaCo and Gemini/NICI high-contrast imaging of the young, self-luminous planet Beta Pictoris b in seven near-to-mid IR photometric filters, using advanced image processing methods to achieve high signal-to-noise, high precision measurements. While Beta Pic b's near-IR colors mimic those of a standard, cloudy early-to-mid L dwarf, it is overluminous in the mid-infrared compared to the field L/T dwarf sequence. Few substellar/planet-mass objects-i.e., κ And b and 1RXJ 1609B-match Beta Pic b's JHKsL photometry and its 3.1 micron and 5 micron photometry are particularly difficult to reproduce. Atmosphere models adopting cloud prescriptions and large (approx. 60 micron)dust grains fail to reproduce the Beta Pic b spectrum. However, models incorporating thick clouds similar to those found forHR8799 bcde, but also with small (a fewmicrons) modal particle sizes, yield fits consistent with the data within the uncertainties. Assuming solar abundance models, thick clouds, and small dust particles (a = 4 micron), we derive atmosphere parameters of log(g) = 3.8 +/- 0.2 and Teff = 1575-1650 K, an inferred mass of 7+4 −3 MJ, and a luminosity of log(L/L) approx. −3.80 +/- 0.02. The best-estimated planet radius, is approx. equal to 1.65 +/- 0.06 RJ, is near the upper end of allowable planet radii for hot-start models given the host star's age and likely reflects challenges constructing accurate atmospheric models. Alternatively, these radii are comfortably consistent with hot-start model predictions if Beta Pic b is younger than is approx. equal to 7 Myr, consistent with a late formation well after its host star's birth approx. 12+8 −4 Myr ago.

overluminous↗

Stability analysis of spacecraft power systems

The problems in applying standard electric utility models, analyses, and algorithms to the study of the stability of spacecraft power conditioning and distribution systems are discussed. Both single-phase and three-phase systems are considered. Of particular concern are the load and generator models that are used in terrestrial power system studies, as well as the standard assumptions of load and topological balance that lead to the use of the positive sequence network. The standard assumptions regarding relative speeds of subsystem dynamic responses that are made in the classical transient stability algorithm, which forms the backbone of utility-based studies, are examined. The applicability of these assumptions to a spacecraft power system stability study is discussed in detail. In addition to the classical indirect method, the applicability of Liapunov's direct methods to the stability determination of spacecraft power systems is discussed. It is pointed out that while the proposed method uses a solution process similar to the classical algorithm, the models used for the sources, loads, and networks are, in general, more accurate. Some preliminary results are given for a linear-graph, state-variable-based modeling approach to the study of the stability of space-based power distribution networks.

Halpin, S. M.↗

Impact of geostationary satellite water vapor channel data on weather analysis and forecasting

Preliminary results from NWP impact studies are indicating that upper-tropospheric wind information provided by tracking motions in sequences of geostationary satellite water vapor imagery can positively influence forecasts on regional scales, and possibly on global scales as well. The data are complimentary to cloud-tracked winds by providing data in cloud-free regions, as well as comparable in quality. First results from GOES-8 winds are encouraging, and further efforts and model impacts will be directed towards optimizing these data in numerical weather prediction (NWP). Assuming successful launches of GOES-J and GMS-5 satellites in 1995, high quality and resolution water vapor imagers will be available to provide nearly complete global upper-tropospheric wind coverage.

Velden, Christopher S.↗

Climbing Darwin's ladder

The work of Bartel and Szostak, in which RNA molecules were selected to enhance the ability to catalyze a reaction similar to a step in protein-catalyzed RNA replication, is discussed. An important aspect of this experiment was the ability to reach a high level of functional organization in ten evolutionary steps. Further steps necessary to obtain an RNA enzyme with RNA replicase activity include performing the reaction with mononucleoside 5'-triphosphates, generalizing the reaction to include a variety of sequences without loss of template-dependent specificity, and overcoming template self-structure that could prevent some regions from being copied efficiently.

NASA Discipline Exobiology↗

Positive selection moments identify potential functional residues in human olfactory receptors

Correlated mutation analysis and molecular models of olfactory receptors have provided evidence that residues in the transmembrane domains form a binding pocket for odor ligands. As an independent test of these results, we have calculated positive selection moments for the alpha-helical sixth transmembrane domain (TM6) of human olfactory receptors. The moments can be used to identify residues that have been preferentially affected by positive selection and are thus likely to interact with odor ligands. The results suggest that residue 622, which is commonly a serine or threonine, could form critical H-bonds. In some receptors a dual-serine subsite, formed by residues 622 and 625, could bind hydroxyl determinants on odor ligands. The potential importance of these residues is further supported by site-directed mutagenesis in the beta-adrenergic receptor. The findings should be of practical value for future physiological studies, binding assays, and site-directed mutagenesis.

Non-NASA Center↗

Enabling Experimental Evolution: Multi-Parameter Sensor System Integration into a Culture/Stressor Biofluidics System

Experimental evolution (EE) exposes microbial communities to ecological stressors, simulating dynamics up to near-extinction events. Combined with comparative sequencing and other molecular tools, such data can inform the genetic and other biological mechanisms underlying extremophile adaptation, and other observed effects. Automating this type of experiment using biofluidics can mitigate many traditional obstacles, including delays in assay results and environment adjustment and the need for many replicates. A first-generation device for automating EE procedures, the Automated Adaptive Directed Evolution Chamber (AADEC), was developed at NASA Ames. UV-C radiation was the stressor, an LED-photodiode array measured optical density, magnetic agitation and peristaltic pump systems ensured nutrient availability, and Arduino microcontrollers provided control. Escherichia coli in LB kanamycin media was used for testing and performance verification. A manual laboratory procedure with timed exposure to UV-C was performed to typify tolerance acquisition. Approximately a 106 factor increase in survival ratio was recorded over multiple iterations. Currently, a second-generation device is being developed integrating more real-time sensors: redox potential (ORP), indicating available/consumed metabolic energy; dissolved oxygen (DO), indicating aerobic/anaerobic growth; pH, indicating metabolic products; and electrical conductivity (EC), another indicator of metabolic products. The EC sensor system was constructed and calibrated in-house and matched commercial sensors in the required range. A Raspberry Pi computer automated the electrical system, allowing real-time data acquisition. The fluidics card was made of CNC-milled polycarbonate for biocompatibility. Each sensor parameter can also be used as a selection pressure alone or in combination with others to create extreme microbial environments. As a proof of concept, this work demonstrated sensor operation in one pair of growth-sensor chambers. It can be expanded to a multi-chamber system to enable inter-culture comparisons and multi-population studies. The prior Arduino system will be ported to the RPi system. Future stressors to be added include thermal, reactive oxygen species, and varying nutrient availability.

Govinda Raj, Chinmayee↗

A form-factor method for determining the structure of distorted stars

The equilibrium equations of a uniformly rotating and tidally distorted star are reduced to the same form as for a spherical star except for the inclusion of two form factors. One factor, expressing the buoyancy effects of centrifugal force, is determined directly from the integrated structure variables. The other factor, expressing the deviation from spherical shape, is shown to be relatively insensitive to errors in the assumed shape, so that accurate solutions are obtained in spite of the use of an a priori shape. The method is employed by adding computations for the factors to an existing spherical model program. Upper Main Sequence models determined by this method compare closely with results from the double approximation method even for critical rotation and tidal distortion.

Wolfe, R. H., Jr.↗

Technical report series on global modeling and data assimilation. Volume 2: Direct solution of the implicit formulation of fourth order horizontal diffusion for gridpoint models on the sphere

High order horizontal diffusion of the form K Delta(exp 2m) is widely used in spectral models as a means of preventing energy accumulation at the shortest resolved scales. In the spectral context, an implicit formation of such diffusion is trivial to implement. The present note describes an efficient method of implementing implicit high order diffusion in global finite difference models. The method expresses the high order diffusion equation as a sequence of equations involving Delta(exp 2). The solution is obtained by combining fast Fourier transforms in longitude with a finite difference solver for the second order ordinary differential equation in latitude. The implicit diffusion routine is suitable for use in any finite difference global model that uses a regular latitude/longitude grid. The absence of a restriction on the timestep makes it particularly suitable for use in semi-Lagrangian models. The scale selectivity of the high order diffusion gives it an advantage over the uncentering method that has been used to control computational noise in two-time-level semi-Lagrangian models.

Max J. Suarez↗

On the progenitors of white dwarfs

Direct observational evidence is presented which indicates that the immediate progenitors of white dwarfs are the central stars of planetary nebulae (approximately 70%), other post-AGB objects (approximately 30%), and post-HB objects not massive enough to climb the AGB (approximately 0.3%). The combined birth rate for these objects is in satisfactory agreement with the death rate of main-sequence stars and the birth rate of white dwarfs.

Drilling, J. S.↗