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Opening doors to physical sample tracking and attribution in Earth and environmental sciences

Physical samples and their associated data and metadata underpin scientific discoveries across disciplines and can enable new science when appropriately archived. However, there are significant gaps in current practices and infrastructure that prevent accurate provenance tracking, reproducibility, and attribution. For most samples, descriptive metadata are often sparse, inaccessible, or absent. Samples and associated data and metadata may also be scattered across numerous physical collections, data repositories, laboratories, data files, and papers with no clear linkage or provenance tracking as new information is generated over time. The Earth Science Information Partners (ESIP) Physical Samples Curation Cluster has therefore developed guidance for scientific authors on ‘Publishing Open Research Using Physical Samples.’ This involved synthesizing existing practices, gathering community feedback, and assessing real-world examples. We identified improvements needed to enable authors to efficiently cite and link Earth science samples and related data, and track their use. Our goal is to help improve discoverability, interoperability, and reuse of physical samples, and associated data and metadata. Though primarily focused on the needs of Earth and environmental sciences, these guidelines are broadly applicable.

58 GEOSCIENCES↗

Design and Construction of a High Field Cable Test Facility at Fermilab

Fermi National Accelerator Laboratory, together with Lawrence Berkeley National Laboratory, is building a new High Field Vertical Magnet Test Facility (HFVMTF) to be situated in the Magnet Test Facility at Fermilab. The HFVMTF is jointly funded by the US DOE Offices of Science, High Energy Physics, and Fusion Energy Sciences, and will serve as a superconducting cable test facility for both communities. The background magnetic field for test samples is 15 T and will be produced by a magnet provided by LBNL operating at 1.9 K in superfluid helium. The samples will be placed in the background magnetic field, cooled to between 4.5 K and a user-specified upper limit, and will be powered with a super-conducting transformer at up to 100 kA. Additionally, this facility will be used to test high-field superconducting magnet models and demonstrators, including hybrid magnets, produced by the US Magnet Development Program. Presently, the various tasks of the project are at different stages of execution, from conceptual to ready-for-construction designs. Here, this paper describes the parameters and design status of the pit construction, cryostat, heat exchanger, lambda plate, power system, and quench protection and monitoring systems of the facility.

43 PARTICLE ACCELERATORS↗

A Review of Recent and Emerging Machine Learning Applications for Climate Variability and Weather Phenomena

Abstract Climate variability and weather phenomena can cause extremes and pose significant risk to society and ecosystems, making continued advances in our physical understanding of such events of utmost importance for regional and global security. Advances in machine learning (ML) have been leveraged for applications in climate variability and weather, empowering scientists to approach questions using big data in new ways. Growing interest across the scientific community in these areas has motivated coordination between the physical and computer science disciplines to further advance the state of the science and tackle pressing challenges. During a recently held workshop that had participants across academia, private industry, and research laboratories, it became clear that a comprehensive review of recent and emerging ML applications for climate variability and weather phenomena that can cause extremes was needed. This article aims to fulfill this need by discussing recent advances, challenges, and research priorities in the following topics: sources of predictability for modes of climate variability, feature detection, extreme weather and climate prediction and precursors, observation–model integration, downscaling, and bias correction. This article provides a review for domain scientists seeking to incorporate ML into their research. It also provides a review for those with some ML experience seeking to broaden their knowledge of ML applications for climate variability and weather.

54 ENVIRONMENTAL SCIENCES↗

Biogeochemical reactions and release of iron-bound organic carbon during the redox processes. Final report

Accurate simulation and prediction for reactions of soil organic carbon (OC) under different biogeochemical conditions remain a grand challenge. This project aims to investigate the transformation and degradation of OC under anaerobic and aerobic conditions as well as anaerobic-aerobic transitions, as well as its coupling with reactions for iron (Fe) oxide minerals. We determined that OC can serve as electron shuttle (including pyrogenic OC) and donor for accelerating the reduction of Fe oxide. The presence of OC can inhibit the transformation of poor crystalline Fe oxide (ferrihydrite) to other more crystalline forms. Reduction of Fe oxide can lead to the mobilization of OC, depending on the ratio of OC/Fe. More condensed aromatic OC can be selectively associated with Fe oxide and also resistant to the reduction release, enhancing their stability during the anaerobic reactions. Under aerobic condition, the association with Fe oxide can inhibit the degradation of OC and also its priming effects on the degradation of indigenous soil OC. During an anaerobic-aerobic transition, OC mineralization was inhibited substantially compared to controls incubated only aerobically. Our field measurement in the Arctic region revealed the importance of deep soil temperature in regulating the generation of CO 2 and CH 4 . These results highlighted the importance of redox reactions in controlling the fate and stability of soil OC. For future studies, investigations are required to fill in the knowledge gap regarding the structure and chemical nature of important organic ligands for Fe, accurate quantification of Fe-bound OC in soils, the long-term effects of anaerobic-aerobic transitions on the OC mineralization as well as response of microbial communities to redox transitions.

54 ENVIRONMENTAL SCIENCES↗

A general mechanistic framework for cross-scale understanding of hot spots and hot moments in carbon and water fluxes

Semi-arid ecosystems, like those in the American Southwest, exert a massive impact on the interannual variability of carbon and water cycling. Unfortunately, these carbon and water fluxes are notoriously difficult to predict due to their high spatial and temporal variability, which is poorly captured by the current generation of vegetation models. Indeed, this region is exemplified by the ‘hot spots and hot moments’ concept, which states that small areas in space (‘hot spots’) and transient moments in time (‘hot moments’) exert an outsized influence on biogeochemical cycling. However, the factors that regulate these pulses in biogeochemical activity are unknown, as is their variability across space and time. These uncertainties severely limit efforts to better represent hot spots and hot moments in models. Here, we seek to develop a generalized method for detecting and quantifying the importance of hot spots and hot moments from individual plant to regional scales. Underpinning this method is our recently developed statistical approach for identifying hot spots and hot moments. By applying this method to semi-continuous measurements of plant water status, a depth profile of soil water potential, and ecosystem fluxes via eddy covariance, we will track the fate of water through the soil-plant-atmosphere continuum and identify the mechanistic drivers of these transient pulses in biogeochemical activity. Then, we will expand this approach across a broad network of Ameriflux towers, and apply a machine learning approach that will allow us to upscale measurements of hot spots and hot moments across the American Southwest and quantify their impact on carbon and water cycles. These products will allow us to identify hot spots and hot moments across spatio-temporal scales and will serve as crucial data sources for validating a new generation of models that can better capture highly dynamic carbon and water fluxes. The proposed method will be easily transferable across biomes and will serve as a framework for future research on hot spots and hot moments across the plant ecophysiology, biometeorology, and vegetation modeling communities.

54 ENVIRONMENTAL SCIENCES↗

Lessons from Artist in Residence Program Design and Impact

As a national laboratory, Pacific Northwest National Laboratory (PNNL) seeks to be on the leading edge of public interest research and deliver innovation, a core value of the institution. Through the support of the U.S. Department of Energy’s Water Power Technologies Office, PNNL has convened a workshop entitled Advancing Energy Futures through Art in Seattle, Washington, on August 19th and 20th, 2024. An explicit focus on Artist in Residence (AiR) programs initiates the discussion, as this is one of the few clear places where public interest research, artistic engagement, and energy futures have aligned. The workshop proposes to hear from program managers of successful AiR programs, scientists, and artists who work in the energy futures space, to discuss AiR program models and successful modalities for art and storytelling. This paper is provided as background context for workshop participants.

99 GENERAL AND MISCELLANEOUS↗

Cooperative Support of the Fermilab Site’s Natural Areas and Related Programs (CRADA Final Report)

Under the prime contract with the Department of Energy, Fermi Research Alliance, LLC (FRA) is responsible for effective stewardship of the Fermi National Accelerator Laboratory (Fermilab) 6,800-acre site, to assure that Fermilab is renewed and enhanced to meet future mission needs. As the steward of the Fermilab site, FRA is responsible for maintaining the natural areas for the site (e.g., prairie restoration sites, woodlands, etc.), which are essential for protecting the health and safety of personnel working on or visiting the site, while supporting the scientific and educational missions of Fermilab. Fermilab Natural Areas (FNA) is a not-for-profit corporation organized and existing under the laws of the State of Illinois. FNA was founded in 2006 and incorporated in 2008 for the purposes of studying, conserving, and restoring the Fermilab Site’s natural areas in a manner consistent with the science mission of Fermilab and enhancing the awareness and visibility of the natural amenities of Fermilab to neighboring communities.

54 ENVIRONMENTAL SCIENCES↗

Microbial Community Characteristics Largely Unaffected by X-Ray Computed Tomography of Sediment Cores

X-ray computed tomography (CT) scanning is used to study the physical characteristics of soil and sediment cores, allowing scientists to analyze stratigraphy without destroying core integrity. Microbiologists often work with geologists to understand the microbial properties in such cores; however, we do not know whether CT scanning alters microbial DNA such that DNA sequencing, a common method of community characterization, changes as a result of X-ray exposure. Our objective was to determine whether CT scanning affects the estimates of the composition of microbial communities that exist in cores. Sediment cores were extracted from a salt marsh and then submitted for CT scanning. We observed a minimal effect of CT scanning on microbial community composition in the sediment cores either when the cores were examined shortly after recovery from the field or after the cores had been stored for several weeks. In contrast, properties such as sediment layer and marsh location did affect microbial community structure. While we observed that CT scanning did not alter microbial community composition as a whole, we identified a few amplicon sequence variants (13 out of 7,037) that showed differential abundance patterns between scanned and unscanned samples among paired sample sets. Our overall conclusion is that the CT-scanning conditions typically used to obtain images for geological core characterization do not significantly alter microbial community structure. We stress that minimizing core exposure to X-rays is important if cores are to be studied for biological properties. Future investigations might consider variables, such as the length and energy of radiation exposure, the volume of the core, or the degree, to which microbial communities are stressed as important factors in assessing the impact of X-rays on microbes in geological cores.

59 BASIC BIOLOGICAL SCIENCES↗

Bioenergy cropping systems shape ant community composition and functional roles

R code and partial data for Haan, Helms, & Landis 2023, Bioenergy cropping systems shape ant community composition and functional roles, to be published in Frontiers in Conservation Science. The ant species list we use to generate the species matrix was uploaded previously (10.5281/zenodo.8215581) in association with another manuscript (Haan et al. 2023, Science Advances, Contrasting effects of bioenergy crops on biodiversity). Therefore here we include a small table with trait information for each species along with the R code used specifically for this manuscript.

ants↗

Snowmass 2021 White Paper: Electron Ion Collider for High Energy Physics

Electron Ion Collider (EIC) is a particle accelerator facility planned for construction at Brookhaven National Laboratory on Long Island, New York by the United States Department of Energy. EIC will provide capabilities of colliding beams of polarized electrons with polarized beams of proton and light ions. EIC will be one of the largest and most sophisticated new accelerator facilities worldwide, and the only new large-scale accelerator facility planned for construction in the United States in the next few decades. The versatility, resolving power and intensity of EIC will present many new opportunities to address some of the crucial and fundamental open scientific questions in particle physics. This document provides an overview of the science case of EIC from the perspective of the high energy physics community.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Envisioning U.S. Climate Predictions and Projections to Meet New Challenges

In the face of a changing climate, the understanding, predictions, and projections of natural and human systems are increasingly crucial to prepare and cope with extremes and cascading hazards, determine unexpected feedbacks and potential tipping points, inform long-term adaptation strategies, and guide mitigation approaches. Increasingly complex socio-economic systems require enhanced predictive information to support advanced practices. Such new predictive challenges drive the need to fully capitalize on ambitious scientific and technological opportunities. These include the unrealized potential for very high-resolution modeling of global-to-local Earth system processes across timescales, reduction of model biases, enhanced integration of human systems and the Earth Systems, better quantification of predictability and uncertainties; expedited science-to-service pathways, and co-production of actionable information with stakeholders. Enabling technological opportunities include exascale computing, advanced data storage, novel observations and powerful data analytics, including artificial intelligence and machine learning. Looking to generate community discussions on how to accelerate progress on U.S. climate predictions and projections, representatives of Federally-funded U.S. modeling groups outline here perspectives on a six-pillar national approach grounded in climate science that builds on the strengths of the U.S. modeling community and agency goals. This calls for an unprecedented level of coordination to capitalize on transformative opportunities, augmenting and complementing current modeling center capabilities and plans to support agency missions. Tangible outcomes include projections with horizontal spatial resolutions finer than 10 km, representing extremes and associated risks in greater detail, reduced model errors, better predictability estimates, and more customized projections to support next generation climate services.

54 ENVIRONMENTAL SCIENCES↗

Post Conference Activities for the NCSE 2019 Annual Conference: Sustainable Infrastructure & Resilience

The National Council for Science and the Environment (NCSE) held its 19th Annual Conference from January 7-10, 2019. The NCSE 2019 Annual Conference: Sustainable Infrastructure & Resilience explored how systems thinking that includes tools, data, and synthesis effectively supports the increasingly urgent need to advance a more resilient, sustainable society. Nearly 600 participants from a range of scientific disciplines and sectors including natural and social science, humanities, engineering, government, business, and civil society attended the conference. Post-conference activities planned through this project were planned to extend the impact of the Annual Conference and were made possible through support from the Department of Energy. These efforts included: 1) developing and producing a research pilot on Energy Systems and Resilient Infrastructure, which advances research focused on the better alignment of education and workforce needs with respect to energy resilience; 2) facilitating dialogue and in-person convenings with the Energy Education Community of Practice across the broader NCSE research community; and 3) designing and hosting a webinar series focused on the role of science in infrastructure and resilience. This report summarizes the outcomes of the proposed activities and additional work made possible by support from the Department of Energy.

54 ENVIRONMENTAL SCIENCES↗

FY23 Laboratory Directed Research & Development Annual Report

At Savannah River National Laboratory (SRNL), we put science to work to protect the environment and address nuclear security challenges. Through our transformative science and technology efforts, SRNL provides solutions to the Department of Energy (DOE) Office of Environmental Management (EM) for the safe cleanup of environmental legacy resulting from nuclear weapons development and government-sponsored nuclear energy research. SRNL also supports DOE’s National Nuclear Security Administration (NNSA) as it maintains the nation’s nuclear stockpile and reduces the threat of nuclear proliferation around the world. Investments through SRNL’s Laboratory Directed Research and Development (LDRD) program drive exploratory research foundational to advancements in mission critical technologies for EM, NNSA and other offices of DOE. Our LDRD program also provides meaningful development opportunities for the people central to innovation. Seven Laboratory Director’s Postdoctoral Research Fellows were supported by LDRD during fiscal year 2023. These named postdoctoral fellows are driving SRNL’s scientific and technical core competencies forward through their dedication to research and advancement of technologies. The LDRD program supports established researchers to explore new concepts, while fueling opportunities for the next generation of scientists to join the SRNL workforce, contributing to the global scientific community through scientific publications. Enjoy reading this Annual Report which summarizes the innovative science and engineering contributions of SRNL staff supported by the LDRD Program. Dr. Vahid Majid

Majidi, Vahid↗

Earthworms Exposed to Polyethylene and Biodegradable Microplastics in Soil: Microplastic Characterization and Microbial Community Analysis

While much is known about microplastics in aquatic environments, only few studies have focused on how microplastics interact with terrestrial organisms. The objective of our study was to investigate the interactions of earthworms with microplastics in a natural environment with environmentally realistic plastic concentrations. Here we investigated whether earthworms would ingest microplastics and incorporate them into their bodies and cast, and whether microplastics would alter the intestinal and soil microbiome. Lumbricus terrestris was exposed to two types of mi croplastics, biodegradable polybutylene adipate terephthalate (PBAT) and low-density polyethylene (LDPE) in mesocosoms filled with natural soil. Microplastics were mixed with poplar leaves and earthworms were allowed to forage for food for 20 days. Surface and bulk soil, earthworm cast, and earthworms themselves were sampled and analyzed for plastic content and microbial communities. Earthworms did not show macroscopic health deterioration (weight loss, vitality). We observed microplastics particles in earthworm casts and guts. Raman spectroscopy indicated that PBAT in guts and cast had degraded to some extent; however, LDPE remained unchanged among the different samples. Microbial analysis showed that soil and casts has similar microbial communities; however, they were signicantly different from the guts samples. Microplastic treatments did not result in a statistically signicant change in bacterial richness, diversity or community composition compared to controls. Taken together, our results suggest that, at environmentally realistic concentrations and short exposure times, PBAT and LDPE microplastics do not have adverse effects on Lumbricus terrestris earthworms.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

KS-TmG.1.0

As part of the Pacific Northwest National Laboratory’s (PNNL) Science Focus Area program we are investigating the impact of environmental change on microbial community function in grassland soils. To enable a comprehensive survey of the metabolic potential of complex soil microbiomes, we performed ultra-deep metagenome sequencing, collecting >1 terabase of sequence data from grassland soils representing different precipitation regimes. Intermediate precipitation regime soil (rain-fed and irrigated agriculture) was collected from Konza Prairie Biological Station (KPBS).

54 ENVIRONMENTAL SCIENCES↗

WA-TmG.1.0

As part of the Pacific Northwest National Laboratory’s (PNNL) Science Focus Area program we are investigating the impact of environmental change on microbial community function in grassland soils. To enable a comprehensive survey of the metabolic potential of complex soil microbiomes, we performed ultra-deep metagenome sequencing, collecting >1 terabase of sequence data from grassland soils representing different precipitation regimes. Soil samples were collected from Washington State University’s Irrigated Agriculture Research and Extension Center (IAREC) in Prosser, WA.

54 ENVIRONMENTAL SCIENCES↗

Sinclair Community College and OARnet Requirements Analysis Report

EPOC uses the Deep Dive process to discuss and analyze current and planned science, research, or education activities and the anticipated data output of a particular use case, site, or project to help inform the strategic planning of a campus or regional networking environment. This includes understanding future needs related to network operations, network capacity upgrades, and other technological service investments. A Deep Dive comprehensively surveys major research stakeholders’ plans and processes in order to investigate data management requirements over the next 5–10 years. Between October 2021 and March 2022 staff members from the Engagement and Performance Operations Center (EPOC) met with researchers and staff from Sinclair Community College (SCC) and OARnet with the purpose of performing a Deep Dive into scientific and research drivers. The goal of this activity was to help characterize the requirements for a number of campus use cases, and to enable cyberinfrastructure support staff to better understand the needs of the researchers within the community.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗