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At least 613 records · Page 34

Fluorescence Studies of Protein Crystal Nucleation

We have postulated that, in the case of tetragonal chicken egg white lysozyme, crystal growth occurs by the addition of pre-critical nuclei sized n-mers that form in the bulk solution, and that the n-mer growth units were multiples of the tetrameric 4(sub 3) helical structure. These have the strongest intermolecular bonds in the crystal and are therefore likely to be the first species formed. High resolution AFM studies provide strong supporting evidence for this model, but the data also suggest that the actual species in solution may not be identical in structure to that found in the crystal. We are using fluorescence resonance energy transfer (FRET) to study the initial solution phase self-assembly process, using covalent fluorescent derivatives which crystallize in the characteristic P4(sub 3)2(sub 1)2(sub 1) space group. FRET studies are being carried out between the cascade blue (CB-lys, donor, Ex(sub max) 366 nm, Em 420 nm) and lucifer yellow (LY-lys, acceptor, Ex(sub max) 430 nm, Em 528 nm) asp101 derivatives. The estimated R(sub 0) for this probe pair, the distance where 50% of the donor energy is transferred to the acceptor, is approx. 1.2 nm, compared to 2.2 nm between the side chain carboxyls of adjacent asp101's in the crystalline 4(sub 3) helix. The short donor lifetime of 2.80 ns (chi(sup 2) = 0.644), coupled with the large average distances between the molecules (greater than or equal to 50 nm) in solution, ensure that any energy transfer observed is not due to random diffusive interactions. Lifetime data show that CB-lys has a single lifetime when it is the only species in solution. Similarly, LY-lys also exhibits a single lifetime of 4.63 ns (chi(sup 2) = 0.42) when alone in solution. Addition of LY-lys to CB-lys results in the appearance of a third lifetime component of 0.348ns for the CB-lys. The fractional intensities of the different species present can be used to estimate the distribution of monomer and n-mers in solution. The self-association process is a function of the protein concentration relative to the saturation concentration, and observing it in dilute solution (conc. less than or equal to 10(exp -5)M) requires that the experiments be performed under low solubility conditions, i.e., low temperatures and high salt concentrations. Data from preliminary steady state FRET studies with N-terminal bound pyrene acetic acid (PAA-lys, donor, Ex 340 nm, Em 376 nm) and asp101 LY-lys as an acceptor showed a consistent trend of decreasing donor fluorescence intensity with increasing total protein concentration. The FRET data have been obtained at pH 4.6, 0.1M NaAc buffer, at 5 and 7% NaCl, 4 C. The corresponding C(sub sat) values are 0.471 and 0.362 mg/ml (approx. 3.3 and approx. 2.5 x 10(exp -5)M respectively). The donor fluorescence decrease is more pronounced at7% NaCl, consistent with the expected increased intermolecular interactions at higher salt concentrations as reflected in the lower solubility. Results from these and other ongoing studies will be discussed in conjunction with an emerging model for how tetragonal lysozyme crystals nucleate and the relevance of that model to other proteins.

Pusey, Marc↗

Uncoupling Electrokinetic Flow Solutions

The continuum-scale electrokinetic porous-media flow and excess charge redistribution equations are uncoupled using eigenvalue decomposition. The uncoupling results in a pair of independent diffusion equations for “intermediate” potentials subject to modified material properties and boundary conditions. The fluid pressure and electrostatic potential are then found by recombining the solutions to the two intermediate uncoupled problems in a matrix-vector multiplication. Expressions for the material properties or source terms in the intermediate uncoupled problem may require extended precision or careful rewriting to avoid numerical cancellation, but the solutions themselves can typically be computed in double precision. The approach works with analytical or gridded numerical solutions and is illustrated through two examples. The solution for flow to a pumping well is manipulated to predict streaming potential and electroosmosis, and a periodic one-dimensional analytical solution is derived and used to predict electroosmosis and streaming potential in a laboratory flow cell subjected to low frequency alternating current and pressure excitation. The examples illustrate the utility of the eigenvalue decoupling approach, repurposing existing analytical solutions or numerical models and leveraging solutions that are simpler to derive for coupled physics.

58 GEOSCIENCES↗

Phased Microphone Array on Aircraft Fuselage

This paper studies some challenging features for phased microphone arrays on aircraft fuselage, including the effects of sound scattering such as refraction by nonuniform boundary layer flows, reflection by curved surfaces, and diffraction by sharp edges and smooth geometry. The objective is to show if and how source locations and source amplitudes can be accurately captured by the array data analysis, in the presence of these features. The study starts with canonical problems to separately examine the individual features, making use of their respective analytical solutions, which provide exact results for all quantities needed for the array data processing. To simulate realistic flight environments, a generic aircraft geometry is then utilized, involving multiple scattering mechanisms and multiple noise sources to model aircraft engine noise. For this application, numerical solutions are computed to provide noise propagation and scattering from the sources to the microphones, as well as the quantities needed for array data analysis. The study reveals the effects of various features on fuselage-mounted arrays and provides guidelines to account for these effects in array data analysis.

Yueping Guo↗

Multiple buoyancy driven flows in a vertical cylinder heated from below

The structure of axisymmetric buoyancy-driven convection in a vertical cylinder heated from below is probed by finite element solution of the Boussinesq equations coupled with computed-implemented perturbation techniques for detecting and tracking multiple flows and for determining flow stability. Results are reported for fluids with Prandtl number of one and for cylinders with aspect ratio (Lambda) (defined as the height to radius of the cylinder) between 0.5 and 2.25. Extensive calculations of the neutral stability curve for the static solution and of the nonlinear motions along the bifurcating flow families show a continuous evolution of the primary cellular motion from a single toroidal cell to two and three cells nested radially in the cylinder, instead of the sharp transitions found for a cylinder with shear-free sidewalls. The smooth transitions in flow structure with Rayleigh number and lambda are explained by nonlinear connectivity between the first two bifurcating flow families formed either by a secondary bifurcation point for Lambda or = Lambda * approximately 0.80 or by a limit point for Lambda Lambda *. The transition between these two modes may be described by the theory of multiple limit point bifurcation.

Yamaguchi, Y.↗

Plan It Together: Optimizing Across Generation, Transmission, Distribution, and Distributed Energy Resources

Integrated planning holds the promise of unlocking lower total system cost solutions by connecting previously siloed planning processes. This article summarizes the state of bulk and local grid planning today and details multiple new analytical approaches that can enable more holistic planning methods to develop comprehensive solutions to generation, transmission, distribution, and distributed energy resource needs. These include both iterative approaches as well as cooptimization techniques. In addition to the benefits of these methods, the technical and institutional challenges and associated solutions are also discussed.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Using Strassen's algorithm to accelerate the solution of linear systems

Strassen's algorithm for fast matrix-matrix multiplication has been implemented for matrices of arbitrary shapes on the CRAY-2 and CRAY Y-MP supercomputers. Several techniques have been used to reduce the scratch space requirement for this algorithm while simultaneously preserving a high level of performance. When the resulting Strassen-based matrix multiply routine is combined with some routines from the new LAPACK library, LU decomposition can be performed with rates significantly higher than those achieved by conventional means. We succeeded in factoring a 2048 x 2048 matrix on the CRAY Y-MP at a rate equivalent to 325 MFLOPS.

Bailey, David H.↗

A Crew Seat for Human Exploration in Multiple Gravity Environments

This work attempts to develop a single crew seating solution that is applicable across a range of gravity environments encountered by spacecraft proposed in several conceptual spacecraft architectures. All of these spacecraft will need to provide some sort of stationary accommodation for the crew for performing various activities such as work in science laboratories, maintenance and repair facilities, medical care facilities, and spacecraft operations centers, as well as for basic habitation in crew quarters, entertainment / relaxation facilities, and crew dining facilities. Depending on the spacecraft or architecture, this stationary accommodation may be experienced continuously in microgravity, such as would be the case for the Deep Space Exploration Vehicle. Alternately, it could be in continuous lunar or Martian gravity, such as the Common Habitat base camps. It could experience fractional gravity, such as a Pressurized Rover for In-Space Missions at a Near Earth Asteroid or one of the Martian moons. It could alternate between artificial gravity and microgravity, such as the Nautilus-X. It could alternate between microgravity and lunar or Martian gravity, such as the SpaceX Starship Human Landing System or the Blue Origin Blue Moon Block 2 Human Landing System. Or it could be in continuous Earth gravity, such as ground trainer systems. Prior human spaceflight systems for stationary accommodation have been focused on microgravity applications. These systems have their own limitations and cannot be used in a gravity environment. A public crowdsourcing campaign generated dozens of ideas, which ultimately generated a Gecko Mobility Aids system for crew translation and the Multi-Gravity Crew Seat (MGCS) for stationary accommodation. The MGCS functions in gravity as a traditional terrestrial seat, performing functions of load for the overall body and forearms, as well as head and neck load relief while positioning the body within range of an intended task. In microgravity, the MGCS functions as a body restraint, securing the body against inadvertent drifting by applying a restraining pressure at the front and back of the thighs, shoulders, and back. The initial MGCS concept was developed in a NASA hackathon and was refined through a review of dozens of terrestrial seating styles. Additionally, a review of anthropometry and biomechanics data related to the neutral body posture was conducted to help inform the microgravity configuration of the MGCS. A series of CAD models were iteratively developed, with subject matter expert reviews leading to design improvements. A scale model was constructed and used with a humanoid model to demonstrate MGCS accommodation of a human-like body in both gravity and microgravity modes. Work to develop a full-scale protype of the MGCS is discussed, including design and fabrication of the headrest, arm rest, seat back, seat pan, seat base, and the conversion mechanisms. A 1-g human-in-the-loop evaluation of the prototype assessed the acceptability of performing seated activities in the MGCS, collecting data on the usability, comfort, and ease of ingress/egress. Based on the evaluation results, design modifications needed for reduced gravity testing are documented and initial work is indicated for a reduced gravity test plan.

Restraints and Mobility Aids↗

Extended Plate Wall System Expands Adoption of High-R Envelope Solutions

For decades, the residential building industry has worked to expand opportunities to increase the thermal resistance of walls. Multiple high-R wall construction methods have been developed, yet market adoption remains low because of perceived complexity and cost. One appealing solution is an extended plate wall system (EPW). Framing for top and bottom plates is one nominal dimension larger than for studs, which provides space for a 2-inch layer of foam plastic insulative sheathing (FPIS). Wood structural sheathing (OSB or plywood) is then installed on the exterior, fastened directly to the plates and nailed through the foam to the studs. In contrast to the conventional method of installing FPIS as a fully exterior layer, the EPW greatly simplifies air sealing, installation and detailing of windows and doors, an application of a weather resistive barrier, and attachment of cladding.

Building America↗

Extended Plate Wall System Expands Adoption of High-R Envelope Solution

For decades, the residential building industry has worked to expand opportunities to increase the thermal resistance of walls. Multiple high-R wall construction methods have been developed, yet market adoption remains low because of perceived complexity and cost. One appealing solution is an extended plate wall system (EPW). Framing for top and bottom plates is one nominal dimension larger than for studs, which provides space for a 2-inch layer of foam plastic insulative sheathing (FPIS). Wood structural sheathing (OSB or plywood) is then installed on the exterior, fastened directly to the plates and nailed through the foam to the studs. In contrast to the conventional method of installing FPIS as a fully exterior layer, the EPW greatly simplifies air sealing, installation and detailing of windows and doors, an application of a weather resistive barrier, and attachment of cladding.

30 DIRECT ENERGY CONVERSION↗

Criteria for the use of regression analysis for remote sensing of sediment and pollutants

An examination of limitations, requirements, and precision of the linear multiple-regression technique for quantification of marine environmental parameters is conducted. Both environmental and optical physics conditions have been defined for which an exact solution to the signal response equations is of the same form as the multiple regression equation. Various statistical parameters are examined to define a criteria for selection of an unbiased fit when upwelled radiance values contain error and are correlated with each other. Field experimental data are examined to define data smoothing requirements in order to satisfy the criteria of Daniel and Wood (1971). Recommendations are made concerning improved selection of ground-truth locations to maximize variance and to minimize physical errors associated with the remote sensing experiment.

Whitlock, C. H.↗

Overlapping Schwarz Methods Are Not Anisotropy‐Robust Multigrid Smoothers

We analyze overlapping multiplicative Schwarz methods as smoothers in the geometric multigrid solution of two-dimensional anisotropic diffusion problems. For diffusion equations, it is well known that the smoothing properties of point-wise smoothers, such as Gauss Seidel, rapidly deteriorate as the strength of anisotropy increases. On the other hand, global smoothers based on line smoothing are known to generally provide good smoothing for diffusion problems, independent of the anisotropy strength. Here, a natural question is whether global methods are really necessary to achieve good smoothing in such problems, or whether it can be obtained with locally overlapping block smoothers using sufficiently large blocks and overlap. Through local Fourier analysis and careful numerical experimentation, we show that global methods are indeed necessary to achieve anisotropy-robust smoothing. Specifically, for any fixed block size bounded sufficiently far away from the global domain size, we find that the smoothing properties of overlapping multiplicative Schwarz rapidly deteriorate with increasing anisotropy, irrespective of the amount of overlap between blocks. Moreover, our results indicate that anisotropy-robust smoothing requires blocks of diameter 𝒪⁡(𝜖 −1/2 ) for anisotropy ratio 𝜖 ∈(0,1] .

97 MATHEMATICS AND COMPUTING↗

3-D composite velocity solutions for subsonic/transonic flows

A composite velocity procedure for the three-dimensional reduced Navier-Stokes equations is developed. In the spirit of matched asymptotic expansions, the velocity components are written as a combination multiplicative and additive composite of viscouslike velocities and pseudopotential or inviscid velocities. The solution procedure is then consistent with both asymptotic inviscid flow and boundary layer theory. For transonic flow cases, the Enquist-Osher flux biasing scheme developed for the full potential equation is used. A quasi-conservation form of the governing equations is used in the shock region to capture the correct rotational shock with the standard nonconservation form of the equations used in nonshock regions. The consistent coupled strongly implicit procedure coupled with a plane relaxation procedure is used to solve the discretized equations.

Gordnier, R. E.↗

Spectroscopic Online Monitoring: Using a Multi-Track Visible Spectrometer to Facilitate a Mass Balance Study in a Simulated TALSPEAK Process

Nuclear energy is a promising low-carbon energy candidate to meet the increased demand for green energy, where the integration of fuel recycling can have significant benefits for material usage and waste reduction. Utilizing in situ monitoring tools can provide ample opportunities to better control and safeguard nuclear material recycle processes while also offering knowledge and insight into real-time solution properties. The simultaneous measurement of analytical targets in multiple process locations can enable real-time mass balance and material accountancy calculations. This is demonstrated here with a mass balance study of Nd 3+ on countercurrent aqueous/organic metal extraction within a single centrifugal contactor. The Nd 3+ concentration was simultaneously monitored at the inlets and outlets of both aqueous and organic phases using a visible absorbance detector that allowed for the simultaneous measurement of up to six locations. The Nd 3+ concentration was calculated by using chemical data science algorithms, where model training sets were collected on a single track of the detector. The discussion includes addressing the challenges of using a model collected on a single track and applying it as a model across the other tracks on the detector. Each track of the detector corresponds to one measurement location on the contactor. The difference in the integrated moles of Nd 3+ between the inlet and outlet at the end of the experiment was near zero, indicating that the mass balance of this experiment was maintained. Overall, the online spectroscopic monitoring was able to follow changing solution conditions and accurately measure the concentration of Nd 3+ in different locations within the contactor system.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Grand challenges in mass storage: A systems integrators perspective

Within today's much ballyhooed supercomputing environment, with its CFLOPS of CPU power, and Gigabit networks, there exists a major roadblock to computing success; that of Mass Storage. The solution to this mass storage problem is considered to be one of the 'Grand Challenges' facing the computer industry today, as well as long into the future. It has become obvious to us, as well as many others in the industry, that there is no clear single solution in sight. The Systems Integrator today is faced with a myriad of quandaries in approaching this challenge. He must first be innovative in approach, second choose hardware solutions that are volumetric efficient; high in signal bandwidth; available from multiple sources; competitively priced, and have forward growth extendibility. In addition he must also comply with a variety of mandated, and often conflicting software standards (GOSIP, POSIX, IEEE, MSRM 4.0, and others), and finally he must deliver a systems solution with the 'most bang for the buck' in terms of cost vs. performance factors. These quandaries challenge the Systems Integrator to 'push the envelope' in terms of his or her ingenuity and innovation on an almost daily basis. This dynamic is explored further, and an attempt to acquaint the audience with rational approaches to this 'Grand Challenge' is made.

Lee, Richard R.↗

Efficient co-solution of time step size and independent state in simulations of fluid-driven fracture propagation with embedded meshes

Here we present an efficient time-continuation scheme for fluid-driven fracture propagation problems in the extended finite element method framework. The approach applies a monolithic solution strategy to a fully coupled and implicit approximation of hydro-mechanical systems in conjunction with simultaneous linear elastic propagation of multiple fractures. At the end of each time step, the process ensures that the weakest fracture tip is in an equilibrium propagation regime. Furthermore, the solution process provides an initialization procedure for the newly created fracture spaces and an a priori estimate of the stress intensity factor growth rate, improving simulation robustness, and efficiency. The solution process is validated using the Kristianovich-Geertsma-de Klerk analytical solution under the toughness- and viscosity-dominated regimes. It is also extended to and demonstrated on problems with multiple fractures undergoing simultaneous propagation with stress shadow interactions. Numerical examples demonstrate that the solution process can reduce the required computational cost by one order of magnitude compared to other existing methods.

42 ENGINEERING↗

Use of multiple-stage remote sensing techniques to develop forest stocking equations

Portions of a forest supporting density levels that affect natural resource yields must be quantified to estimate the operational feasibility of a proposed management system. Estimates of average parameters do not necessarily provide complete knowledge, particularly with frequently skewed forest parameters. Instead, another statistic, the portion of a forest supporting minimum density levels would be useful to set realistic limits to the implementation of management systems and to establish priorities for operational programs. Such a statistic can be obtained from solutions of forest stocking equations generated by applications of multiple-stage remote sensing techniques.

Bisson, H. R.↗

LA17-V-InverseRadTransportProblem-PD2Kb. Final Project Report

In the inverse radiation transport problem, a radiation signal emanating from an unknown object is used to reconstruct geometric and material parameters of the object , e.g., the mass of special nuclear material (SNM), the isotopic composition of the SNM (e.g., the enrichment of 235U), the thickness of shielding, etc. The inverse radiation transport problem is one of the most fundamental and important in the emergency response mission, and has been addressed in previous NA-22 and NA-42/84 investments by using derivative-free optimization methods. Our project was aimed at (i) consolidating previous work by applying polynomial chaos expansion (PCE) for reducing significantly the number of forward model simulations required by derivative-free optimization methods; (ii) developing a general-purpose framework and stand-alone software for solving the inverse radiation transport problem by applying a new “predictive modeling” methodology (predictive modeling of coupled multi-physics systems, PM_CMPS) which enables the fusing of experimental and computational information; and (iii) developing several benchmarks (for unscattered gamma rays) for demonstrating the quantification of non-Gaussian features (e.g., skewness and kurtosis, which characterize asymmetries and long tails) of response distributions by deterministically and efficiently propagating parameter uncertainties (covariances and higher-order moments, where available) using high-order sensitivities computed by the recently developed comprehensive adjoint sensitivity analysis methodology (C-ASAM). With regard to (i), application of PCE, the most significant accomplishment of this project was an implementation of PCE into INVERSE that significantly reduced computation time for the DiffeRential Evolution Adaptive Metropolis (DREAM) and Differential Evolution (DE) methods. For inverse transport problems with measurements of neutron leakage, neutron multiplication, and neutron-induced gamma-rays, the solution times for the DREAM and DE methods were reduced by factors of 30-300, reducing run times from hours to minutes while maintaining the same accuracy as the standard (non-PCE) DREAM and DE. Speedups were further improved by exploring sparse grid quadrature sets using the Toolkit for Adaptive Stochastic Modeling and Non-Intrusive ApproximatioN (Tasmanian) toolset. An initial exploration of sparse grids indicated that further speedups factors of 5-10 are obtainable. The implementation of PCE in INVERSE is not in a form that users can easily access. With regard to (ii), solving the inverse problem using a predictive modeling paradigm, the most significant accomplishment of this project were the derivation and implementation of adjoint-based second derivatives in neutron and photon transport theory. There are two codes that compute these derivatives. SENSPG computes them for uncollided gamma rays and SENSMG computes them for neutron leakage. SENSMG is open-source code available on github. Other significant accomplishments included a stand-alone code, MULTI-PRED, that implements the predictive modeling paradigm, along with a detailed manual. The code was implemented in the existing INVERSE code for inverse problems, but a head-to-head comparison of inverse methods was not achieved. We also derived and implemented the capability to compute sensitivities for multiplicity measurements into the SENSMG code, and this capability was used in a data assimilation application, but it was not used for solving inverse problems. With regard to (iii), developing benchmarks to demonstrate the importance of high-order sensitivity and uncertainty analysis, the most significant accomplishment of this project were two test problems that showed how important second-order sensitivities are.

07 ISOTOPE AND RADIATION SOURCES↗

Design Considerations for Aerocapture Delivery of Uranus Orbiter and Probe

This paper presents an aerocapture system design for delivering the Uranus Orbiter and Probe (UOP) subsystems to their science orbit using the Mars Science Laboratory architecture. A packaging and integration scheme are presented for UOP subsystems, with careful consideration of large components required for outer planet science missions (RTG power generation, RF communications). The implication of packaging multiple RTG’s inside an aeroshell during a multiple year cruise phase will be explained, with possible thermal design solutions to mitigate RTG waste heat analyzed. Mass properties and margins for the system are discussed and an overall mass risk assessment is presented for the entry system and total flight system at launch. Alternative vehicle configurations are explored to include multiple probes and enable science objectives during transit to Uranus. Aerocapture mass savings when compared to the baseline UOP design are presented.

Andrew J. Gomez-Delrio↗