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At least 613 records · Page 34

m2p (Monomers to Polymers)

The software is Python-based code that takes monomers, represented as SMILES, and "reacts" them together to form long polymer chains, represented as SMILES, based on known polymer chemistries. The software is used in a machine-learning pipeline where a database and machine-learning approaches are used to predict polymer properties base on molecular structure. This software is necessary to represent the polymer chain, instead of simple repeat units, as the software statistically represents different molecular architectures that occur during reactions (e.g. head-to-head, head-to-tail, and tail-to-tail). It is capable of building polymer chains with five different chemistries: vinyl/olefin, polyamide, polycarbonate, polyester, and polyimides. The user is able to specify different monomer pairings and degree of polymerization for different polymer chains.

Wilson, Nolan↗

3D, Real-time Label-free Visualization of Cellular Health

This work directly addresses a key question raised in TA7, Topic L1 of HDTRA1-16-24-FRCWMDCall, “Can quantum level changes be detected, mapped, and understood in the biological environment to allow faster diagnostic responses?” This work will use the inherently sensitive quantum property of a molecular excited state lifetime to visualize and map discrete, subtle nanometer-scale changes (e.g. NADPH vs NADH) that are key indicators of cellular health in response to chemical and biological threats and MCMs. It will also develop and exploit new, fast imaging light-sheet methods to allow faster diagnostic responses. This new imaging system will exploit time-correlated single photon counting and new advances in single-objective light-sheet microscopy (oblique plane microscopy) for fast, quantitative analysis of cellular redox state. We will add an entirely new dimension (excited state fluorescence lifetime) to oblique plane microscopy—a method that even without this added dimension was labeled by Nature Methods in 2021 as a ‘Method to Watch.’ Following instrument development and validation, we will explore cellular response to Burkholderia infections and antibiotic treatment in immortal cell lines followed by expansion to more realistic cellular environments (such as neuro-muscular junctions, NMJs) to test nerve agent simulants and their MCMs. As a microscopy platform, these methods hold the promise of being able to visualize a single infected cell (or a cellular compartment) and MCM treatment well before a larger and later organ/organism response.

47 OTHER INSTRUMENTATION↗

Finch: Toxicity Dose Response Curve Prediction of Chemical Compounds and Mixtures

A paradigm shift in chemical risk assessment is emphasizing mixture testing over single compound analysis, eliminating animal testing, and adopting advanced modeling approaches to understand mixture activity profiles. However, existing computational models largely focus on single chemicals, with few effective solutions for modeling complex mixtures that account for synergistic or antagonistic effects and multiple Modes of Action (MoA). Conventional methods like concentration addition (CA) and independent action (IA) are insufficient for this task as they are designed for simplistic interactions and struggle to account for the dynamic and multifaceted nature of chemical mixtures, such as overlapping MoA and non-linear interactions. Finch offers a novel approach utilizing deep learning (DL) embeddings and multi-task quantitative structure-activity relationship (QSAR) models to improve chemical exposure prediction. By leveraging molecular descriptors, physiochemical properties, and large language model (LLM) embeddings from SMILES inputs, Finch preserves critical information in a latent space thereby enhancing predictive accuracy. The multi-task learning aspect of Finch is highly advantageous, as it simultaneously optimizes multiple loss functions, leveraging all available data across tasks to develop generalized representations that effectively capture complex ingredient interactions within mixtures.

59 BASIC BIOLOGICAL SCIENCES↗

Sum rule functions

Sum rule functions for expressions of atomic or molecular quantum mechanical properties

Barnsley, M.↗

Correlation of the rate of ultrasound propagation with other characteristic magnitudes of the liquid state

The application of ultrasonic radiation to the procedure for determining the physical properties of liquids is discussed. The basis for linking the kinetic properties of liquids to the equilibrium properties through the molecular structure and the potential of the intermolecular forces is defined. The test procedure using ultrasonic radiation is described. Results of tests with specified fluids are tabulated.

Stetiu, C.↗

Infrared astronomy and high energy astrophysics

Observations of the diffuse far infrared flux from the galactic plane as well as far infrared measurements of the properties of dense molecular clouds, when combined with recent high-energy gamma ray measurements and radio observations of carbon monoxide, can yield new information about the total mass of molecular clouds, the large scale structure of the inner galaxy, and the density of cosmic rays. These observations are discussed.

Fazio, G. G.↗

Nitrile crosslinked polyphenyl-quinoxaline/graphite fiber composites

Studies were performed to reduce the 600 F thermoplasticity of polyphenylquinoxaline (PPQ) matrix resins by introducing crosslinking by the reaction of terminal nitrile groups. Seven solvents and solvent mixtures were studied as the crosslinking catalysts and used to fabricate crosslinked PPQ/HMS graphite fiber composites. The room temperature and 600 F composite mechanical properties after short time and prolonged 600 F air exposure and the 600 F composite weight loss were determined and compared to those properties of high molecular weight, linear PPQ/HMS graphite fiber composites.

Alston, W. B.↗

Infrared astronomy and high energy astrophysics

Observations of the diffuse far-infrared flux from the galactic plane, as well as far-infrared measurements of the properties of dense molecular clouds, when combined with recent high-energy gamma-ray measurements and radio observations of carbon monoxide, yield information about the total mass of molecular clouds, the large-scale structure of the inner galaxy, and the density of cosmic rays.

Fazio, G. G.↗

Rationale for two phase polymer system microgravity separation experiments

The two-phase systems that result when aqueous solutions of dextran and poly(ethylene glycol) are mixed at concentrations above a few percent are discussed. They provide useful media for the partition and isolation of macromolecules and cell subpopulations. By manipulating their composition, separations based on a variety of molecular and surface properties are achieved, including membrane hydrophobic properties, cell surface charge, and membrane antigenicity. Work on the mechanism of cell partition shows there is a randomizing, nonthermal energy present which reduces separation resolution. This stochastic energy is probably associated with hydrodynamic interactions present during separation. Because such factors should be markedly reduced in microgravity, a series of shuttle experiments to indicate approaches to increasing the resolution of the procedure are planned.

Brooks, D. E.↗

The formation of low-mass stars

Visible to millimeter wavelength observations of the global and individual aspects of low-mass star formation are discussed. Infrared and millimeter-wave techniques reveal large collections of dust-embedded young stellar objects associated with the densest regions of molecular clouds. Special attention is given to studies of the Taurus-Auriga and Rho Opiuchi molecular cloud complexes. Properties such as the bolometric luminosities and evolutionary states of young objects can be determined by modeling the 1-100-micron spectral energy distributions.

Wilking, Bruce A.↗

The formation and structure of circumstellar and interstellar dust

The intriguing abundance of long linear carbon chain molecules in some dark clouds and in circumstellar shells is still not well understood. Recent laboratory studies which have probed this problem indicate that when carbon vapor nucleates to form particles, linear chains and hollow cage molecules (fullerenes) also form at more-or-less the same time. The results have consequences for the formation, structures and spectroscopic properties of the molecular and dust components ejected from cool carbon-rich stars. A most interesting result of the experimental observations relates to the probability that a third character in addition to the chains and grains, the C(sub 60) molecule probably in the form of the ion C(sub 60)(sup +) in the less shielded regions, is present and perhaps responsible for some of the ubiquitously observed interstellar spectroscopic features such as the Diffuse Interstellar Features, the 2170A UV Absorption or perhaps some of the Unidentified Infrared Bands. Further study of small carbon particles which form in the gas phase has resulted in the discovery that they have quasi-icosahedral spiral shell structures. The role that such species may play in the interstellar medium as well as that played by C(sub 60) (or C sub 60 sup +) should soon be accessible to verification by a combination of laboratory experiment and astronomical spectroscopy.

Kroto, H. W.↗

Enhancing The Hyperpolarizabilities Of Finite Polyenes

Improved strategy for exploiting unusual optical properties to enhance molecular hyperpolarizabilities by introducing "defect" quantum-mechanical states and produce molecules switched photochemically or electrochemically between states characterized by different second molecular hyperpolarizabilities. Strategy, conjugation and/or substitution defects, electrically neutral or charged dopant orimpurity atoms or groups thereof, incorporated into finite polyene. Defects in finite polyenes alter second molecular hyperpolarizabilities. Transient large second hyperpolarizabilities attainable in molecules of structure II.

Beratan, David N.↗

Linear Scaling Density Functional Calculations with Gaussian Orbitals

Recent advances in linear scaling algorithms that circumvent the computational bottlenecks of large-scale electronic structure simulations make it possible to carry out density functional calculations with Gaussian orbitals on molecules containing more than 1000 atoms and 15000 basis functions using current workstations and personal computers. This paper discusses the recent theoretical developments that have led to these advances and demonstrates in a series of benchmark calculations the present capabilities of state-of-the-art computational quantum chemistry programs for the prediction of molecular structure and properties.

Scuseria, Gustavo E.↗

Effective Potential Energies and Transport Cross Sections for Interactions of Hydrogen and Nitrogen

The interaction energies for N2-He and N2-H2 are calculated by accurate ab initio methods. The virial coefficient and differential scattering cross section for N2-H2 are calculated; the theoretical results are compared with experimental data. The transport collision integrals for N2-H2 and N2-N2 interactions are calculated and tabulated; the results yield transport coefficients that compare well with measured data. Transport coefficients are found to be determined accurately from the interaction energies for a specific configuration of the molecule formed from the interaction partners. Comparisons with results of measurement and accurate calculations demonstrate that the transport properties of complex molecular interactions can be determined rapidly and fairly accurately from the interaction energies of simpler system using combination rules for the short-range parameters of effective interaction energies and the coefficients for the long-range forces. The coefficients for a two-parameter temperature expansion of diffusion and viscosity are tabulated for a realistic universal potential energy that is based primarily on the results of very accurate calculations of the He-He interaction energy.

Stallcop, James R.↗

Heat, Moisture and Chemical Resistant Polyimide Compositions and Methods for Making and Using Them

Polyimides having a desired combination of high thermo-oxidative stability, low moisture absorption and excellent chemical and corrosion resistance are prepared by reacting a mixture of compounds including (a) 3,3',4,4'- benzophenonetetracarboxylic dianhydride (BTDA), (b) 3,4'- oxydianiline (3,4'-ODA), and (c) 5-norbornene-2,3- dicarboxylic anhydride (NA) in a high boiling, aprotic solvent to give 5 to 35% by weight of polyamic acid solution. The ratio of (a), (b), and (c) is selected to afford a family of polyimides having different molecular weights and properties. The mixture first forms a polyamic acid precursor. Upon heating at or above 300 C, the polyamic acids form polyimides, which are particularly suitable for use as a high temperature coating, adhesive, thin film, or composite matrix resin.

Ruth H Pater↗

Electron-impact total ionization cross sections of DNA sugar-phosphate backbone and an additivity principle

The improved binary-encounter dipole (iBED) model [W.M. Huo, Phys. Rev. A64, 042719-1 (2001)l is used to study the total ionization cross sections of the DNA sugar-phosphate backbone by electron impact. Calculations using neutral fragments found that the total ionization cross sections of C3' - and C5', -deoxyribose-phospate, two conformers of the sugar-phosphate backbone, are close to each other. Furthermore, the sum of the ionization cross sections of the separate deoxyribose and phosphate fragments is in close agreement with the C3' - and C5" -deoxyribose-phospate cross sections, differing by less than 10%. The result implies that certain properties of the-DNA, like the total singly ionization cross section, are localized properties and a building-up or additivity principle may apply. This allows us to obtain accurate properties of larger molecular systems built up from the results of smaller subsystem fragments. Calculations are underway using a negatively charged sugar-phosphate backbone with a metal counter-ion.

Huo, Winifred M.↗

Biogeochemical and Optical Analysis of Coastal DOM for Satellite Retrieval of Terrigenous DOM in the U.S. Middle Atlantic Bight

Estuaries and coastal ocean waters experience a high degree of variability in the composition and concentration of particulate and dissolved organic matter (DOM) as a consequence of riverine/estuarine fluxes of terrigenous DOM, sediments, detritus and nutrients into coastal waters and associated phytoplankton blooms. Our approach integrates biogeochemical measurements (elemental content, molecular analyses), optical properties (absorption) and remote sensing to examine terrestrial DOM contributions into the U.S. Middle Atlantic Bight (MAB). We measured lignin phenol composition, DOC and CDOM absorption within the Chesapeake and Delaware Bay mouths, plumes and adjacent coastal ocean waters to derive empirical relationships between CDOM and biogeochemical measurements for satellite remote sensing application. Lignin ranged from 0.03 to 6.6 ug/L between estuarine and outer shelf waters. Our results demonstrate that satellite-derived CDOM is useful as a tracer of terrigenous DOM in the coastal ocean

Mannino, A.↗