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At least 613 records · Page 34
All sourcesNASA NTRSDOE OSTI
DOE OSTI2022

Initializing BSQ with Open-Source ICCING

While it is well known that there is a significant amount of conserved charges in the initial state of nuclear collisions, the production of these due to gluon splitting has yet to be thoroughly investigated. The ICCING (Initial Conserved Charges in Nuclear Geometry) algorithm reconstructs these quark distributions, providing conserved strange, baryon, and electric charges, by sampling a given model for the g → qq¯ splitting function over the initial energy density, which is valid at top collider energies, even when µB = 0. The ICCING algorithm includes fluctuations in the gluon longitudinal momenta, a structure that supports the implementation of dynamical processes, and the c++ version is now open-source. A full analysis of parameter choices on the model has been done to quantify the effect these have on the underlying physics. We find there is a sustained difference across the different charges that indicates sensitivity to hot spot geometry.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2023

Geo-temporal patterns to design cost-effective interventions for zoonotic diseases -the case of brucellosis in the country of Georgia

Control of zoonosis can benefit from geo-referenced procedures. Focusing on brucellosis, here the ability of two methods to distinguish disease dissemination patterns and promote cost-effective interventions was compared. Geographical data on bovine, ovine and human brucellosis reported in the country of Georgia between 2014 and 2019 were investigated with (i) the Hot Spot (HS) analysis and (ii) a bio-geographical (BG) alternative. More than one fourth of all sites reported cases affecting two or more species. While ruminant cases displayed different patterns over time, most human cases described similar geo-temporal features, which were associated with the route used by migrant shepherds. Other human cases showed heterogeneous patterns. The BG approach identified small areas with a case density twice as high as the HS method. The BG method also identified, in 2018, a 2.6–2.99 higher case density in zoonotic (human and non-human) sites than in non-zoonotic sites (which only reported cases affecting a single species) –a finding that, if corroborated, could support cost-effective policy-making. Three dissemination hypotheses were supported by the data: (i) human cases induced by sheep-related contacts; (ii) human cases probably mediated by contaminated milk or meat; and (iii) cattle and sheep that infected one another. This proof-of-concept provided a preliminary validation for a method that may support cost-effective interventions oriented to control zoonoses. To expand these findings, additional studies on zoonosis-related decision-making are recommended.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2021

Enhancing Paraoxon Binding to Organophosphorus Hydrolase Active Site

Organophosphorus hydrolase (OPH) is a metalloenzyme that can hydrolyze organophosphorus agents resulting in products that are generally of reduced toxicity. The best OPH substrate found to date is diethyl p-nitrophenyl phosphate (paraoxon). Most structural and kinetic studies assume that the binding orientation of paraoxon is identical to that of diethyl 4-methylbenzylphosphonate, which is the only substrate analog co-crystallized with OPH. In the current work, we used a combined docking and molecular dynamics (MD) approach to predict the likely binding mode of paraoxon. Then, we used the predicted binding mode to run MD simulations on the wild type (WT) OPH complexed with paraoxon, and OPH mutants complexed with paraoxon. Additionally, we identified three hot-spot residues (D253, H254, and I255) involved in the stability of the OPH active site. We then experimentally assayed single and double mutants involving these residues for paraoxon binding affinity. The binding free energy calculations and the experimental kinetics of the reactions between each OPH mutant and paraoxon show that mutated forms D253E, D253E-H254R, and D253E-I255G exhibit enhanced substrate binding affinity over WT OPH. Interestingly, our experimental results show that the substrate binding affinity of the double mutant D253E-H254R increased by 19-fold compared to WT OPH.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2024

X-ray Fluorescence Microscopy to Develop Elemental Classifiers and Investigate Elemental Signatures in BALB/c Mouse Intestine a Week after Exposure to 8 Gy of Gamma Rays

Iron redistribution in the intestine after total body irradiation is an established phenomenon. However, in the literature, there are no reports about the use of X-ray fluorescence microscopy or equivalent techniques to generate semi-quantitative 2D maps of iron in sectioned intestine samples from irradiated mice. In this work, we used X-ray fluorescence microscopy (XFM) to map the elemental content of iron as well as phosphorus, sulfur, calcium, copper and zinc in tissue sections of the small intestine from eight-week-old BALB/c male mice that developed gastrointestinal acute radiation syndrome (GI-ARS) in response to exposure to 8 Gray of gamma rays. Seven days after irradiation, we found that the majority of the iron is localized as hot spots in the intercellular regions of the area surrounding crypts and stretching between the outer perimeter of the intestine and the surface cell layer of villi. In addition, this study represents our current efforts to develop elemental cell classifiers that could be used for the automated generation of regions of interest for analyses of X-ray fluorescence maps. Once developed, such a tool will be instrumental for studies of effects of radiation and other toxicants on the elemental content in cells and tissues. While XFM studies cannot be conducted on living organisms, it is possible to envision future scenarios where XFM imaging of single cells sloughed from the human (or rodent) intestine could be used to follow up on the progression of GI-ARS.

X-ray fluorescence microscopy↗
DOE OSTI2021

Quench Detection and Protection for High-Temperature Superconductor Accelerator Magnets

High-temperature superconductors (HTS) are being increasingly used for magnet applications. One of the known challenges of practical conductors made with high-temperature superconductor materials is a slow normal zone propagation velocity resulting from a large superconducting temperature margin in combination with a higher heat capacity compared to conventional low-temperature superconductors (LTS). As a result, traditional voltage-based quench detection schemes may be ineffective for detecting normal zone formation in superconducting accelerator magnet windings. A developing hot spot may reach high temperatures and destroy the conductor before a practically measurable resistive voltage is detected. The present paper discusses various approaches to mitigating this problem, specifically focusing on recently developed non-voltage techniques for quench detection.

Marchevsky, Maxim (ORCID:0000000172839305)↗
DOE OSTI2022

Comparative Genomics Applied to Systematically Assess Pathogenicity Potential in Shiga Toxin-Producing Escherichia coli O145:H28

Shiga toxin-producing Escherichia coli (STEC) O145:H28 can cause severe disease in humans and is a predominant serotype in STEC O145 environmental isolates. Here, comparative genomics was applied to a set of clinical and environmental strains to systematically evaluate the pathogenicity potential in environmental strains. While the core genes-based tree separated all O145:H28 strains from the non O145:H28 reference strains, it failed to segregate environmental strains from the clinical. In contrast, the accessory genes-based tree placed all clinical strains in the same clade regardless of their genotypes or serotypes, apart from the environmental strains. Loss-of-function mutations were common in the virulence genes examined, with a high frequency in genes related to adherence, autotransporters, and the type three secretion system. Distinct differences in pathogenicity islands LEE, OI-122, and OI-57, the acid fitness island, and the tellurite resistance island were detected between the O145:H28 and reference strains. A great amount of genetic variation was detected in O145:H28, which was mainly attributed to deletions, insertions, and gene acquisition at several chromosomal “hot spots”. Finally, our study demonstrated a distinct virulence gene repertoire among the STEC O145:H28 strains originating from the same geographical region and revealed unforeseen contributions of loss-of-function mutations to virulence evolution and genetic diversification in STEC.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

The Multipolar Magnetic Field of the Millisecond Pulsar PSR J0030+0451

Modeling of the NICER X-ray waveform of the pulsar PSR J0030+0451, aimed at constraining the neutron star mass and radius, has inferred surface hot spots (the magnetic polar caps) that imply significantly nondipolar magnetic fields. To this end, we investigate magnetic field configurations that comprise offset dipole-plus-quadrupole components using a static vacuum field and force-free global magnetosphere models. Taking into account the compactness and observer angle values provided by Miller et al. and Riley et al., we compute geodesics from the observer plane to the polar caps to compute the resulting X-ray light curve. We explore, through Markov Chain Monte Carlo techniques, the detailed magnetic field configurations that can reproduce the observed X-ray light curve and have discovered degeneracies, i.e., diverse field configurations, which can provide sufficient descriptions of the NICER X-ray waveforms. Having obtained the force-free field structures, we then compute the corresponding synchronous γ-ray light curves following Kalapotharakos et al.; these we compare to those obtained by Fermi-LAT, to provide models consistent with both the X-ray and the γ-ray data, thereby restricting further the multipole field parameters. An essential aspect of this approach is the proper computation of the relative phase between the synchronous X- and γ-ray light curves. We conclude with a discussion of the broader implications of our study.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

Multidimensional Radiation Hydrodynamics Simulations of Pulsational Pair-instability Supernovae

Stars with masses of 80–130 M ⊙ can encounter pulsational pair-instability at the end of their lives, which triggers consecutive episodes of explosive burning that eject multiple massive shells. Collisions between these shells produce bright transients known as pulsational pair-instability supernovae (PPI SNe) that may explain some extreme supernovae. In this paper, we present the first 2D and 3D radiation hydrodynamics simulations of PPI SNe with the CASTRO code. Radiative cooling causes the collided shells to evolve into thin, dense structures with hot spots that can enhance the peak luminosity of the SN by factors of 2–3. The light curve peaks at 1.9–2.1 × 10 43 erg s -1 for 50 days and then plateaus at 2–3 × 10 42 erg s -1 for 200 days, depending on the viewing angle. The presence of 12 C and 16 O and the absence of 28 Si and 56 Fe in its spectra can uniquely identify this transient as a PPI SN in follow-up observations. Our models suggest that multidimensional radiation hydrodynamics is required to model the evolution and light curves of all shell-collision SNe, such as Type IIne, not just PPI SNe.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

Ab-initio General-relativistic Neutrino-radiation Hydrodynamics Simulations of Long-lived Neutron Star Merger Remnants to Neutrino Cooling Timescales

Abstract We perform the first 3D ab-initio general-relativistic neutrino-radiation hydrodynamics of a long-lived neutron star merger remnant spanning a fraction of its cooling timescale. We find that neutrino cooling becomes the dominant energy loss mechanism after the gravitational-wave dominated phase (∼20 ms postmerger). Electron flavor antineutrino luminosity dominates over electron flavor neutrino luminosity at early times, resulting in a secular increase of the electron fraction in the outer layers of the remnant. However, the two luminosities become comparable ∼20–40 ms postmerger. A dense gas of electron antineutrinos is formed in the outer core of the remnant at densities ∼10 14.5 g cm −3 , corresponding to temperature hot spots. The neutrinos account for ∼10% of the lepton number in this region. Despite the negative radial temperature gradient, the radial entropy gradient remains positive, and the remnant is stably stratified according to the Ledoux criterion for convection. A massive accretion disk is formed from the material squeezed out of the collisional interface between the stars. The disk carries a large fraction of the angular momentum of the system, allowing the remnant massive neutron star to settle to a quasi-steady equilibrium within the region of possible, stable, rigidly rotating configurations. The remnant is differentially rotating, but it is stable against the magnetorotational instability. Other MHD mechanisms operating on longer timescales are likely responsible for the removal of the differential rotation. Our results indicate the remnant massive neutron star is thus qualitatively different from a protoneutron stars formed in core-collapse supernovae.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2024

Interpreting Mass and Radius Measurements of Neutron Stars with Dark Matter Halos

Abstract The high densities of neutron stars (NSs) could provide astrophysical locations for dark matter (DM) to accumulate. Depending on the DM model, these DM admixed NSs (DANSs) could have significantly different properties than pure baryonic NSs, accessible through X-ray observations of rotation-powered pulsars. We adopt the two-fluid formalism in general relativity to numerically simulate stable configurations of DANSs, assuming a fermionic equation of state (EOS) for the DM with repulsive self-interaction. The distribution of DM in the DANS as a halo affects the path of X-rays emitted from hot spots on the visible baryonic surface, causing notable changes in the pulse profile observed by telescopes such as NICER, compared to pure baryonic NSs. We explore how various DM models affect the DM mass distribution, leading to different types of dark halos. We quantify the deviation in observed X-ray flux from stars with each of these halos. We identify the pitfalls in interpreting mass and radius measurements of NSs inferred from electromagnetic radiation and constraining the baryonic matter EOS if these dark halos exist.

Shawqi, Shafayat (ORCID:0000000210956183)↗
DOE OSTI2025

Monte Carlo Simulations of Polarized Radiative Transfer in Neutron Star Atmospheres

Soft X-ray emission from neutron stars affords powerful diagnostic tools for uncovering their surface and interior properties, as well as their geometric configurations. In the atmospheres of neutron stars, the presence of magnetic fields alters the photon-electron scattering cross sections, resulting in nontrivial angular dependence of intensity and polarization of the emergent signals. This paper presents recent developments of our Monte Carlo simulation, MAGTHOMSCATT, which tracks the complex electric field vector for each photon during its transport. Our analysis encompasses the anisotropy and polarization characteristics of X-ray emission for field strengths ranging from nonmagnetic to extremely magnetized regimes that are germane to magnetars. In the very low field domain, we reproduced the numerical solution to the radiative transfer equation for nonmagnetic Thomson scattering, and provided analytical fits for the angular dependence of the intensity and the polarization degree. These fits can be useful for studies of millisecond pulsars and magnetic white dwarfs. By implementing a refined injection protocol, we show that, in the magnetar regime, the simulated intensity and polarization pulse profiles of emission from extended surface regions becomes invariant with respect to the ratio of photon (ω) and electron cyclotron (ω B ) frequencies once ω/ω B ≲ 0.01. This circumvents the need for simulations pertinent to really high magnetic field strengths, which are inherently slower. Our approach will be employed elsewhere to model observational data to constrain neutron star geometric parameters and properties of emitting hot spots on their surfaces.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

The Radius of PSR J0740+6620 from NICER and XMM-Newton Data

PSR J0740+6620 has a gravitational mass of 2.08 ± 0.07 M ⊙ , which is the highest reliably determined mass of any neutron star. As a result, a measurement of its radius will provide unique insight into the properties of neutron star core matter at high densities. Here we report a radius measurement based on fits of rotating hot spot patterns to Neutron Star Interior Composition Explorer (NICER) and X-ray Multi-Mirror (XMM-Newton) X-ray observations. We find that the equatorial circumferential radius of PSR J0740+6620 is 13.7$^{+2.6}_{–1.5}$ km (68%). We apply our measurement, combined with the previous NICER mass and radius measurement of PSR J0030+0451, the masses of two other ~2 M ⊙ pulsars, and the tidal deformability constraints from two gravitational wave events, to three different frameworks for equation-of-state modeling, and find consistent results at ~1.5-5 times nuclear saturation density. For a given framework, when all measurements are included, the radius of a 1.4 M ⊙ neutron star is known to ±4% (68% credibility) and the radius of a 2.08 M ⊙ neutron star is known to ±5%. The full radius range that spans the ±1σ credible intervals of all the radius estimates in the three frameworks is 12.45 ± 0.65 km for a 1.4 M ⊙ neutron star and 12.35 ± 0.75 km for a 2.08 M ⊙ neutron star.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Black Hole Flares: Ejection of Accreted Magnetic Flux through 3D Plasmoid-mediated Reconnection

Magnetic reconnection can power bright, rapid flares originating from the inner magnetosphere of accreting black holes. We conduct extremely high-resolution (5376 × 2304 × 2304 cells) general-relativistic magnetohydrodynamics simulations, capturing plasmoid-mediated reconnection in a 3D magnetically arrested disk for the first time. We show that an equatorial, plasmoid-unstable current sheet forms in a transient, nonaxisymmetric, low-density magnetosphere within the inner few Schwarzschild radii. Magnetic flux bundles escape from the event horizon through reconnection at the universal plasmoid-mediated rate in this current sheet. The reconnection feeds on the highly magnetized plasma in the jets and heats the plasma that ends up trapped in flux bundles to temperatures proportional to the jet's magnetization. The escaped flux bundles can complete a full orbit as low-density hot spots, consistent with Sgr A* observations by the GRAVITY interferometer. Reconnection near the horizon produces sufficiently energetic plasma to explain flares from accreting black holes, such as the TeV emission observed from M87. The drop in the mass accretion rate during the flare and the resulting low-density magnetosphere make it easier for very-high-energy photons produced by reconnection-accelerated particles to escape. The extreme-resolution results in a converged plasmoid-mediated reconnection rate that directly determines the timescales and properties of the flare.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Combining Particle Tracking with Electromagnetic Radiation Showers: Merging GPT and Geant4 with Visualization

Field emitted electrons can seriously affect the operation of high-field, high-duty factor electron accelerators. Accelerated field emission can result in high average power beams which can radiation damage beamline components. In addition, localized losses generate thermal hot spots whose outgassing degrades the ultra-high vacuum required in photoinjectors and cryomodules. However, despite their importance, the effects of field emission are rarely included in the design and engineering of electron injectors. This work attempts to remedy this situation by combining two well-known and well-documented programs, GPT and Geant4, to track electrons and their losses in an injector beamline. This paper describes a system of programs which simulates electron paths and losses along the beamline. In addition, the tracking results can be zoomed and panned along and about the beampipe envelope using an open-source 3D CAD program. The scattering albedo calculations of the combined program, GPT-Geant4, are shown to be in good agreement with the literature albedos. The paper concludes with a dark current simulation for the LCLS-II injector from the cathode to the collimator at 1.5 m from the cathode.

Dowell, David H.↗
DOE OSTI2022

BioRT-Flux-PIHM v1.0: a biogeochemical reactive transport model at the watershed scale

Watersheds are the fundamental Earth surface functioning units that connect the land to aquatic systems. Many watershed-scale models represent hydrological processes but not biogeochemical reactive transport processes. This has limited our capability to understand and predict solute export, water chemistry and quality, and Earth system response to changing climate and anthropogenic conditions. Here we present a recently developed BioRT-Flux-PIHM (BioRT hereafter) v1.0, a watershed-scale biogeochemical reactive transport model. The model augments the previously developed RT-Flux-PIHM that integrates land-surface interactions, surface hydrology, and abiotic geochemical reactions. It enables the simulation of (1) shallow and deep-water partitioning to represent surface runoff, shallow soil water, and deeper groundwater and of (2) biotic processes including plant uptake, soil respiration, and nutrient transformation. The reactive transport part of the code has been verified against the widely used reactive transport code CrunchTope. BioRT-Flux-PIHM v1.0 has recently been applied in multiple watersheds under diverse climate, vegetation, and geological conditions. This paper briefly introduces the governing equations and model structure with a focus on new aspects of the model. It also showcases one hydrology example that simulates shallow and deep-water interactions and two biogeochemical examples relevant to nitrate and dissolved organic carbon (DOC). These examples are illustrated in two simulation modes of complexity. One is the spatially lumped mode (i.e., two land cells connected by one river segment) that focuses on processes and average behavior of a watershed. Another is the spatially distributed mode (i.e., hundreds of cells) that includes details of topography, land cover, and soil properties. Whereas the spatially lumped mode represents averaged properties and processes and temporal variations, the spatially distributed mode can be used to understand the impacts of spatial structure and identify hot spots of biogeochemical reactions. The model can be used to mechanistically understand coupled hydrological and biogeochemical processes under gradients of climate, vegetation, geology, and land use conditions.

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS1966

Cold solid propellant motor has stop-restart capability

Solid propellant rocket is kept and fired at low temperatures in launch vehicles or spacecraft. The motor is capable of developing a specific impulse comparable to that of liquid propellant motors, is started, stopped, and restarted, and is stored in space without solar radiation causing hot spots on the motor casing.

Hendel, F. J.↗
NASA NTRS1968

Silicon solar cell monitors high temperature furnace operation

Silicon solar cell, attached to each viewpoint, monitors that incandescent emission from the hot interior of a furnace without interfering with the test assembly or optical pyrometry during the test. This technique can provide continuous indication of hot spots or provide warning of excessive temperatures in cooler regions.

Zellner, G. J.↗
NASA NTRS1969

Lunar geophysics.

Seismic regions location prediction on visible lunar side based on transient events, hot spots and gravity anomalies

Simmons, G.↗