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At least 613 records · Page 34

Species-specific flowering phenology responses to experimental warming and drought alter herbaceous plant species overlap in a temperate–boreal forest community

Abstract Background and Aims Warmer temperatures and altered precipitation patterns are expected to continue to occur as the climate changes. How these changes will impact the flowering phenology of herbaceous perennials in northern forests is poorly understood but could have consequences for forest functioning and species interactions. Here, we examine the flowering phenology responses of five herbaceous perennials to experimental warming and reduced summer rainfall over 3 years. Methods This study is part of the B4WarmED experiment located at two sites in northern Minnesota, USA. Three levels of warming (ambient, +1.6 °C and +3.1 °C) were crossed with two rainfall manipulations (ambient and 27 % reduced growing season rainfall). Key Results We observed species-specific responses to the experimental treatments. Warming alone advanced flowering for four species. Most notably, the two autumn blooming species showed the strongest advance of flowering to warming. Reduced rainfall alone advanced flowering for one autumn blooming species and delayed flowering for the other, with no significant impact on the three early blooming species. Only one species, Solidago spp., showed an interactive response to warming and rainfall manipulation by advancing in +1.6 °C warming (regardless of rainfall manipulation) but not advancing in the warmest, driest treatment. Species-specific responses led to changes in temporal overlap between species. Most notably, the two autumn blooming species diverged significantly in their flowering timing. In ambient conditions, these two species flowered within the same week. In the warmest, driest treatment, flowering occurred over a month apart. Conclusions Herbaceous species may differ in how they respond to future climate conditions. Changes to phenology may lead to fewer resources for insects or a mismatch between plants and pollinators.

Plant Sciences↗

MINE: maximally informative next experiment—toward a new GWAS experimental design and methodology

Abstract The computational methodology of Genome Wide Association Studies (GWAS) currently has several limitations: (i) the number of observations (rows) on a quantitative trait tends to be smaller than the number of single nucleotide polymorphisms (SNPs) (columns) in the design matrix; (ii) each SNP is usually modeled separately, failing to acknowledge interaction between each other (ie epistasis); (iii) there is implicit linkage disequilibrium (LD) between neighboring SNPs due to their linkage. To overcome these issues, we developed a tool that uses ensemble methods to fit mixed linear models to GWAS data, and these ensemble methods include the development of a new experimental design approach in GWAS, which uses the resultant models and data to select the next informative experiment over time. This new adaptive and staged approach for GWAS experimental design was developed and tested in a 3 yr adaptive model-guided discovery experiment against a fixed classical design. In Sorghum bicolor a total of 79, 86, and 78 accessions were tested in years 1, 2, and 3, respectively out of 343 accessions available in the Bioenergy Association Panel (BAP) each identified for 232,303 SNPs, 1 every 2–3 kb in the genomes. We demonstrated the feasibility of MINE enacted with 8 people in the field per year over 3 yr vs in 1 large classical design enacted with 20 people in 1 yr. The MINE results for chromosomal regions identified controlling dry weight were confirmed against results from previous sorghum GWAS experiments and 1 large classical design for the BAP panel.

Genetics & Heredity↗

Spacer2PAM: A computational framework to guide experimental determination of functional CRISPR-Cas system PAM sequences

Abstract RNA-guided nucleases from CRISPR-Cas systems expand opportunities for precise, targeted genome modification. Endogenous CRISPR-Cas systems in many prokaryotes are attractive to circumvent expression, functionality, and unintended activity hurdles posed by heterologous CRISPR-Cas effectors. However, each CRISPR-Cas system recognizes a unique set of protospacer adjacent motifs (PAMs), which requires identification by extensive screening of randomized DNA libraries. This challenge hinders development of endogenous CRISPR-Cas systems, especially those based on multi-protein effectors and in organisms that are slow-growing or have transformation idiosyncrasies. To address this challenge, we present Spacer2PAM, an easy-to-use, easy-to-interpret R package built to predict and guide experimental determination of functional PAM sequences for any CRISPR-Cas system given its corresponding CRISPR array as input. Spacer2PAM can be used in a ‘Quick’ method to generate a single PAM prediction or in a ‘Comprehensive’ method to inform targeted PAM libraries small enough to screen in difficult to transform organisms. We demonstrate Spacer2PAM by predicting PAM sequences for industrially relevant organisms and experimentally identifying seven PAM sequences that mediate interference from the Spacer2PAM-informed PAM library for the type I-B CRISPR-Cas system from Clostridium autoethanogenum. We anticipate that Spacer2PAM will facilitate the use of endogenous CRISPR-Cas systems for industrial biotechnology and synthetic biology.

59 BASIC BIOLOGICAL SCIENCES↗

Experimental study of extended timescale dynamics of a plasma wakefield driven by a self-modulated proton bunch

Plasma wakefield dynamics over timescales up to 800 ps, approximately 100 plasma periods, are studied experimentally at the Advanced Wakefield Experiment (AWAKE). The development of the longitudinal wakefield amplitude driven by a self-modulated proton bunch is measured using the external injection of witness electrons that sample the fields. In simulation, resonant excitation of the wakefield causes plasma electron trajectory crossing, resulting in the development of a potential outside the plasma boundary as electrons are transversely ejected. Trends consistent with the presence of this potential are experimentally measured and their dependence on wakefield amplitude are studied via seed laser timing scans and electron injection delay scans.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Efficient six-dimensional phase space reconstructions from experimental measurements using generative machine learning

Next-generation accelerator concepts, which hinge on the precise shaping of beam distributions, demand equally precise diagnostic methods capable of reconstructing beam distributions within six-dimensional position-momentum spaces. However, the characterization of intricate features within six-dimensional beam distributions using current diagnostic techniques necessitates a substantial number of measurements, using many hours of valuable beam time. Novel phase space reconstruction techniques are needed to reduce the number of measurements required to reconstruct detailed, high-dimensional beam features in order to resolve complex beam phenomena and as a feedback in precision beam shaping applications. In this study, we present a novel approach to reconstructing detailed six-dimensional phase space distributions from experimental measurements using generative machine learning and differentiable beam dynamics simulations. We demonstrate that this approach can be used to resolve six-dimensional phase space distributions from scratch, using basic beam manipulations and as few as 20 two-dimensional measurements of the beam profile. We also demonstrate an application of the reconstruction method in an experimental setting at the Argonne Wakefield Accelerator, where it is able to reconstruct the beam distribution and accurately predict previously unseen measurements 75× faster than previous methods.

43 PARTICLE ACCELERATORS↗

Photoporomechanics: An Experimental Method to Visualize the Effective Stress Field in Fluid-Filled Granular Media

Effective stress governs the mechanical behavior of porous media. In this study, we use photoelasticimetry to visualize the evolving effective stress field in fluid-filled granular media in processes that couple fluid flow and mechanical deformation. We refer to this experimental method as photoporomechanics. We develop a fabrication process to produce millimeter-scale residual-stress-free photoelastic spheres with high geometric accuracy. We use color to quantify the forces acting on the particles over a wide range of forces, while using light intensity for a small range of forces. We then provide an application of photoporomechanics to illustrate the evolution of effective stress during one-dimensional consolidation: a process by which the stresses caused by a sudden load are gradually transmitted through a fluid-filled granular pack as the fluid drains and excess pore pressures dissipate. We report our technique provides a powerful experimental model system to study the grain-scale underpinning of coupled solid-fluid processes in granular media.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Experimental thermal equation of state of B 2–KCl

The alkali halides are often used as optically-transparent pressure-transmitting media and thermal insulators in laser-heated diamond anvil cell experiments. High P-T equations of state for these materials would allow them to be used simultaneously as sensitive in situ pressure markers, making sample preparation and data analysis simpler. KCl is especially useful for this application because its high melting point, crystallographic simplicity, and low electron density are ideal for use in high-temperature X-ray diffraction experiments. However, the high-temperature static equation of state data for this material is limited in pressure to 8 GPa. As experiments routinely exceed 100 GPa in pressure and thousands of Kelvin, it is necessary for the equation of state of KCl to be determined experimentally at these conditions if it is to be used as an equation of state calibrant in the future. This work combines new high-pressure, high-temperature data of the B2 phase of KCl (up to 167 GPa and 2400 K) with the previously published room-temperature data of Dewaele et al. (2012) to produce a Mie-Gruneisen-Debye thermal equation of state for this material. The room temperature equation of state parameters are similar to those reported previously: V 0 = 32.0(3) cm 3 /mole, K 0 = 24(1) GPa and $K$$^{'}_{0}$ = 4.56(5). The thermal parameters, 0 and q, are 2.9(4) and 1.0(1), respectively. While a q of 1 is expected, the 0 is higher than expected from previous calculations, lower pressure experimental data, and the available shockwave data. Here, previously-reported equations of state underestimate the pressure of KCl at high temperatures.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Composite fermion mass: Experimental measurements in ultrahigh quality two-dimensional electron systems

Composite fermions (CFs), exotic quasiparticles formed by pairing an electron and an even number of magnetic flux quanta, emerge at high magnetic fields in an interacting electron system, and can explain phenomena such as the fractional quantum Hall state (FQHS) and other many-body phases. CFs possess an effective mass (m CF ) whose magnitude is inversely related to the most fundamental property of a FQHS, namely its energy gap. Here we present here experimental measurements of m CF in ultrahigh quality two-dimensional electron systems confined to GaAs quantum wells of varying thickness. An advantage of measuring m CF over gap measurements is that mass values are insensitive to disorder and are therefore ideal for comparison with theoretical calculations, especially for high-order FQHS. Our data reveal that m CF increases with increasing well width, reflecting a decrease in the energy gap as the electron layer becomes thicker and the in-plane Coulomb energy softens. Comparing our measured masses with available theoretical results, we find significant quantitative discrepancies, highlighting that more rigorous and accurate calculations are needed to explain the experimental data.

36 MATERIALS SCIENCE↗

Experimental determination of energy-level structures of diamond silicon-vacancy centers in off-axis magnetic fields

Here, we report the development of an experimental approach to efficiently determine the energy level structure of an individual silicon vacancy (SiV) center in a magnetic field along an arbitrary direction. This approach uses two coupling rates (one each for the ground and the excited states) to characterize the combined effects of static strain and dynamic Jahn-Teller coupling and exploits the fact that orbital Zeeman effects vanish when the magnetic field is normal to the SiV axis. With an analytical expression for the energy level structure of the SiV under a transverse magnetic field, the two coupling rates can be directly derived from two measurements: one on the frequency separation between two spin-conserved transitions and the other on the coherent population trapping resonance of the SiV ground spin states. A detailed comparison between the numerical calculation and the experimental result on the dependence of the spin-conserved splitting on both the amplitude and direction of the magnetic field further reveals unequal orbital magnetic coupling for the ground and excited states, indicating that unequal orbital quenching factors are needed for an accurate description of the SiV energy level structure in a magnetic field.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Experimental study of the 24 Na m ( d,p ) 25 Na reaction and implications for the influence of the 24 Al m isomer on rp -process nucleosynthesis

A radioactive beam of 24 Na with 90% of its content in its 1 + isomeric state (E ex = 0.472 MeV, t 1/2 = 20.18 ms) has been developed and used to perform a measurement of the 24 Na m ( d,p ) 25 Na reaction at the John D. Fox Accelerator Laboratory at Florida State University. This reaction selectively populated ℓ = 0 transfers, allowing the study of low-spin states in 25 Na. Mirror symmetry arguments were then used to investigate the effects of the isomeric state of 24 Al (E ex = 0.426 MeV, t 1/2 = 130 ms) on the astrophysical rate of the 24 Al m (p,γ) 25 Si reaction. Experimental parameters were extracted to provide, for the first time, an experimental reaction rate for the destruction of 24 Al via proton captures in its isomeric state relevant to rp-process nucleosynthesis.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Deconvoluting experimental decay energy spectra: The O 26 case

In nuclear reaction experiments, the measured decay energy spectra can give insights into the shell structure of decaying systems. However, extracting the underlying physics from the measurements is challenging due to detector resolution and acceptance effects. The Richardson-Lucy (RL) algorithm, a deblurring method that is commonly used in optics and has proven to be a successful technique for restoring images, was applied to our experimental nuclear physics data. The only inputs to the method are the observed energy spectrum and the detector's response matrix also known as the transfer matrix. We demonstrate that the technique can help access information about the shell structure of particle-unbound systems from the measured decay energy spectrum that is not immediately accessible via traditional approaches such as χ-square fitting. For a similar purpose, we developed a machine learning model that uses a deep neural network (DNN) classifier to identify resonance states from the measured decay energy spectrum. We tested the performance of both methods on simulated data and experimental measurements. Then, we applied both algorithms to the decay energy spectrum of 26 O → 24 O + n + n measured via invariant mass spectroscopy. Here, the resonance states restored using the RL algorithm to deblur the measured decay energy spectrum agree with those found by the DNN classifier. Both deblurring and DNN approaches suggest that the raw decay energy spectrum of 26 O exhibits three peaks at approximately 0.15 MeV, 1.50 MeV, and 5.00 MeV, with half-widths of 0.29 MeV, 0.80 MeV, and 1.85 MeV, respectively.

Spectrometers & spectroscopic techniques↗

Experimental achievement and signatures of ignition at the National Ignition Facility

An inertial fusion implosion on the National Ignition Facility, conducted on August 8, 2021 (N210808), recently produced more than a megajoule of fusion yield and passed Lawson's criterion for ignition [Phys. Rev. Lett. 129, 075001 (2022)]. Here we describe the experimental improvements that enabled N210808 and present the first experimental measurements from an igniting plasma in the laboratory. Ignition metrics like the product of hot-spot energy and pressure squared, in the absence of self-heating, increased by ~ 35%, leading to record values and an enhancement from previous experiments in the hot-spot energy (~ 3×), pressure (~ 2×), and mass (~ 2×). These results are consistent with self-heating dominating other power balance terms. The burn rate increases by an order of magnitude after peak compression, and the hot-spot conditions show clear evidence for burn propagation into the dense fuel surrounding the hot spot. These novel dynamics and thermodynamic properties have never been observed on prior inertial fusion experiments.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Experimentally Driven Automated Machine-Learned Interatomic Potential for a Refractory Oxide

Understanding the structure and properties of refractory oxides is critical for high temperature applications. In this work, a combined experimental and simulation approach uses an automated closed loop via an active learner, which is initialized by x-ray and neutron diffraction measurements, and sequentially improves a machine-learning model until the experimentally predetermined phase space is covered. Furthermore, a multiphase potential is generated for a canonical example of the archetypal refractory oxide, HfO 2 , by drawing a minimum number of training configurations from room temperature to the liquid state at similar to 2900 degrees C. The method significantly reduces model development time and human effort.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Experimental Observations of Laser-Driven Tin Ejecta Microjet Interactions

The study of high-velocity particle-laden flow interactions is of importance for the understanding of a wide range of natural phenomena, ranging from planetary formation to cloud interactions. Experimental observations of particle dynamics are sparse given the difficulty of generating high-velocity flows of many particles. Ejecta microjets are micron-scale jets formed by strong shocks interacting with imprinted surfaces to generate particle plumes traveling at several kilometers per second. As such, the interaction of two ejecta microjets provides a novel experimental methodology to study interacting particle streams. In this Letter, we report the first time sequences of x-ray radiography images of two interacting tin ejecta microjets taken on a platform designed for the OMEGA Extended Performance (OMEGA EP) laser. We observe that the microjets pass through each other unattenuated for the case of 11.7±3.2 GPa shock pressures and jet velocities of 2.2±0.5 km/s but show strong interaction dynamics for 116.0±6.1 GPa shock pressures and jet velocities of 6.5±0.5 km/s. Furthermore, we find that radiation-hydrodynamic simulations of the experiments are able to capture many aspects of the collisional behavior, such as the attenuation of jet velocity in the direction of propagation, but are unable to match the full spread of the strongly interacting cloud.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Experimental Validation of a Kinetic Ballooning Mode in High-Performance High-Bootstrap Current Fraction Fusion Plasmas

We report the observation of a set of coherent high frequency electromagnetic fluctuations that leads to a turbulence induced self-regulating phenomenon in the DIII-D high bootstrap current fraction plasma. The fluctuations have frequency of 130~220kHz, the poloidal wave length and phase velocity are 16~30 m -1 and ~30 km/s, respectively in the outboard midplane with the estimated toroidal mode number n~5- 9. The fluctuations are located in the internal transport barrier (ITB) region at large radius and are experimentally validated to be kinetic ballooning modes (KBM). Furthermore, quasilinear estimation predicts the KBM to be able to drive experimental particle flux and non-negligible thermal flux, suggesting its significant role in regulating the ITB saturation.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Experimental Generation of Extreme Electron Beams for Advanced Accelerator Applications

In this Letter, we report on the experimental generation of high energy (10 GeV), ultrashort (femtosecond-duration), ultrahigh current (∼ 0.1 MA), petawatt peak power electron beams in a particle accelerator. These extreme beams enable the exploration of a new frontier of high-intensity beam-light and beam-matter interactions broadly relevant across fields ranging from laboratory astrophysics to strong field quantum electrodynamics and ultrafast quantum chemistry. We demonstrate our ability to generate and control the properties of these electron beams by means of a laser-electron beam shaping technique. In conclusion, this experimental demonstration opens the door to on-the-fly customization of extreme beam current profiles for desired experiments and is poised to benefit a broad swath of cross-cutting applications of relativistic electron beams.

43 PARTICLE ACCELERATORS↗

Ab initio modeling and experimental investigation of Fe 2 P by DFT and spin spectroscopies

Fe 2 P alloys have been identified as promising candidates for magnetic refrigeration at room-temperature and for custom magnetostatic applications. The intent of this study is to accurately characterize the magnetic ground state of the parent compound, Fe 2 P, with two spectroscopic techniques, μSR and NMR, in order to provide solid bases for further experimental analysis of Fe 2 P-type transition metal based alloys. Herein, we perform zero applied field measurements using both techniques below the ferromagnetic transition T C = 220 K. The experimental results are reproduced and interpreted using first principles simulations, validating this approach for quantitative estimates in alloys of interest for technological applications.

36 MATERIALS SCIENCE↗

Experimental search for the chiral magnetic effect in relativistic heavy-ion collisions: A perspective

The chiral magnetic effect (CME) refers to generation of the electric current along a magnetic field in a chirally imbalanced system of quarks. The latter is predicted by quantum chromodynamics to arise from quark interaction with nontrivial topological fluctuations of the vacuum gluonic field. The CME has been actively searched for in relativistic heavy-ion collisions, where such gluonic field fluctuations and a strong magnetic field are believed to be present. The CME-sensitive observables are unfortunately subject to a possibly large non-CME background, and firm conclusions on a CME observation have not yet been reached. In this perspective, we review the experimental status and progress in the CME search, from the initial measurements more than a decade ago to the dedicated program of isobar collisions in 2018 and the release of the isobar blind analysis result in 2022 to intriguing hints of a possible CME signal in Au + Au collisions, and discuss future prospects of a potential CME discovery in the anticipated high-statistic Au + Au collision data at the Relativistic Heavy-Ion Collider by 2025. We hope such a perspective will help sharpening our focus on the fundamental physics of the CME and steer its experimental search.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗