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At least 613 records · Page 34

Invariant discovery of features across multiple length scales: Applications in microscopy and autonomous materials characterization

Physical imaging is a foundational characterization method in areas from condensed matter physics and chemistry to astronomy and spans length scales from atomic to universe. Images encapsulate crucial data regarding atomic bonding, materials microstructures, and dynamic phenomena such as microstructural evolution and turbulence, among other phenomena. The challenge lies in effectively extracting and interpreting this information. Variational Autoencoders (VAEs) have emerged as powerful tools for identifying the underlying factors of variation in image data, providing a systematic approach to distilling meaningful patterns from complex data sets. However, a significant hurdle in their application is the definition and selection of appropriate descriptors reflecting local structures. Here, we introduce the scale-invariant VAE approach (SI-VAE) based on the progressive training of the VAE with the descriptors sampled at different length scales. The SI-VAE allows the discovery of the length scale-dependent factors of variation in the system. Here, we illustrate this approach using the ferroelectric domain images and generalize it to the movies of the electron-beam induced phenomena in graphene and topography evolution across combinatorial libraries. This approach can further be used to initialize the decision making in automated experiments including structure–property discovery and can be applied across a broad range of imaging methods. This approach is universal and can be applied to any spatially resolved data including both experimental imaging studies and simulations, and can be particularly useful for exploration of phenomena such as turbulence and scale-invariant transformation fronts.

36 MATERIALS SCIENCE↗

Genetic and Structural Analysis of SARS-CoV-2 Spike Protein for Universal Epitope Selection

Evaluation of immunogenic epitopes for universal vaccine development in the face of ongoing SARS-CoV-2 evolution remains a challenge. Herein, we investigate the genetic and structural conservation of an immunogenically relevant epitope (C662–C671) of spike (S) protein across SARS-CoV-2 variants to determine its potential utility as a broad-spectrum vaccine candidate against coronavirus diseases. Comparative sequence analysis, structural assessment, and molecular dynamics simulations of C662–C671 epitope were performed. Mathematical tools were employed to determine its mutational cost. We found that the amino acid sequence of C662–C671 epitope is entirely conserved across the observed major variants of SARS-CoV-2 in addition to SARS-CoV. Its conformation and accessibility are predicted to be conserved, even in the highly mutated Omicron variant. Costly mutational rate in the context of energy expenditure in genome replication and translation can explain this strict conservation. These observations may herald an approach to developing vaccine candidates for universal protection against emergent variants of coronavirus.

59 BASIC BIOLOGICAL SCIENCES↗

AGN number fraction in galaxy groups and clusters at z < 1.4 from the Subaru Hyper Suprime-Cam survey

Abstract One of the key questions on active galactic nuclei (AGN) in galaxy clusters is how AGN could affect the formation and evolution of member galaxies and galaxy clusters in the history of the Universe. To address this issue, we investigate the dependence of AGN number fraction (fAGN) on cluster redshift (zcl) and distance from the cluster center (R$/$R200). We focus on more than 27000 galaxy groups and clusters at 0.1 < zcl < 1.4 with more than 1 million member galaxies selected from the Subaru Hyper Suprime-Cam. By combining various AGN selection methods based on infrared (IR), radio, and X-ray data, we identify 2688 AGN. We find that (i) fAGN increases with zcl and (ii) fAGN decreases with R$/$R200. The main contributors to the rapid increase of fAGN towards high-z and cluster center are IR- and radio-selected AGN, respectively. These results indicate that the emergence of the AGN population depends on the environment and redshift, and galaxy groups and clusters at high z play an important role in AGN evolution. We also find that cluster–cluster mergers may not drive AGN activity in at least the cluster center, while we have tentative evidence that cluster–cluster mergers could enhance AGN activity in the outskirts of (particularly massive) galaxy clusters.

Hashiguchi, Aoi↗

The Evolution of the Cluster X-ray Scaling Relations in the Wide Angle ROSAT Pointed Survey Sample at 0.6 < z < 1.0

The X-ray properties of a sample of 11 high-redshift (0.6 < z < 1 .O) clusters observed with Chardm and/or XMM-Newton are used to investigate the evolution of the cluster scaling relations. The observed evolution in the normalization of the L-T, M-T, M(sub 2)-T and M-L relations is consistent with simple self-similar predictions, in which the properties of clusters reflect the properties of the Universe at their redshift of observation. Under the assumption that the model of self-similar evolution is correct and that the local systems formed via a single spherical collapse, the high-redshift L-T relation is consistent with the high-z clusters having virialized at a significantly higher redshift than the local systems. The data are also consistent with the more realistic scenario of clusters forming via the continuous accretion of material. The slope of the L-T relation at high redshift (B = 3.32 +/- 0.37) is consistent with the local relation, and significantly steeper than the self-similar prediction of B = 2. This suggests that the same non-gravitational processes are responsible for steepening the local and high-z relations, possibly occurring universally at z is approximately greater than 1 or in the early stages of the cluster formation, prior to their observation. The properties of the intracluster medium at high redshift are found to be similar to those in the local Universe. The mean surface-brightness profile slope for the sample is Beta = 0.66 +/- 0.05, the mean gas mass fractions within R(sub 2500(z)) and R(200(z)) are 0.069 +/- 0.012 and 0.11 +/- 0.02, respectively, and the mean metallicity of the sample is 0.28 +/- 0.11 Z(sub solar).

Maughan, B. J.↗

Screening materials for smoke evolution

The density of smoke produced by burning or smoldering materials is a factor that affects the ability of occupants to escape from a burning structure and the effectiveness of firefighters. Accordingly, considerable effort is being spent on developing materials that minimize the amount of smoke without impairing their performance characteristics. In the present paper, laboratory tests on such materials are described and evaluated. It is seen that the National Bureau of Standards smoke test and the Ohio State University release-rate test are the most promising for screening materials for smoke evolution. It is shown that, for plastics, smoke obscuration is a more realistic concern than smoke toxicity.

Hilado, C. J.↗

The R -process Alliance: Enrichment of r -process Elements in a Simulated Milky Way–like Galaxy

We study the formation of stars with varying amounts of heavy elements synthesized by the rapid neutron-capture process (r-process) based on our detailed cosmological zoom-in simulation of a Milky Way–like galaxy with an N-body/smoothed particle hydrodynamics code, asura. Most stars with no overabundance in r-process elements, as well as the strongly r-process-enhanced (RPE) r-II stars ([Eu/Fe] > +0.7), are formed in dwarf galaxies accreted by the Milky Way within the 6 Gyr after the Big Bang. In contrast, over half of the moderately enhanced r-I stars (+0.3 < [Eu/Fe] ≤ +0.7) are formed in the main in situ disk after 6 Gyr. Our results suggest that the fraction of r-I and r-II stars formed in disrupted dwarf galaxies is larger the higher their [Eu/Fe] is. Accordingly, the most strongly enhanced r-III stars ([Eu/Fe] > +2.0) are formed in accreted components. These results suggest that non-r-process-enhanced stars and r-II stars are mainly formed in low-mass dwarf galaxies that hosted either none or a single neutron star merger, while the r-I stars tend to form in the well-mixed in situ disk. We compare our findings with high-resolution spectroscopic observations of RPE metal-poor stars in the halo and dwarf galaxies, including those collected by the R-Process Alliance. We conclude that observed [Eu/Fe] and [Eu/Mg] ratios can be employed in chemical tagging of the Milky Way’s accretion history.

Chemical enrichment↗

The Evolution of Accreting Binaries: From Brown Dwarfs to Supermassive Black Holes

Circumbinary accretion occurs throughout the universe, from the formation of stars and planets to the aftermath of major galactic mergers. We present an extensive investigation of circumbinary accretion disks, studying circular binaries with mass ratios (q ≡ M 2 /M 1 ) from 0.01 to 1 and at each mass ratio probing the effects of disk thickness and viscosity. We study disks with aspect ratios H/r $\in$ {0.1, 0.05, 0.03} and vary both the magnitude and spatial dependence of viscosity. Although thin accretion disks have previously been found to promote rapid inspirals of equal-mass binaries, we find that gravitational torques become weaker at lower mass ratios and most binaries with 0.01 ≤ q ≤ 0.04 outspiral, which may delay the coalescence of black hole binaries formed from minor mergers and cause high-mass exoplanets to migrate outward. However, in a number of cases, the disks accreting onto binaries with mass ratios ~0.07 fail to develop eccentric modes, leading to extremely rapid inspirals. Variability in black hole accretion correlates with disk eccentricity, and we observe variability above the ~10% level even for mass ratios of 0.01. We demonstrate that the spatial dependence of the viscosity (e.g., α vs. constant ν) significantly affects the degree of preferential accretion onto the secondary, resolving discrepancies between previous studies. Colder circumbinary disks remain eccentric even at q ~ 0.01 and sustain deep, asymmetric cavities.

79 ASTRONOMY AND ASTROPHYSICS↗

The Evolution of Accreting Binaries: From Brown Dwarfs to Supermassive Black Holes

Circumbinary accretion occurs throughout the universe, from the formation of stars and planets to the aftermath of major galactic mergers. We present an extensive investigation of circumbinary accretion disks, studying circular binaries with mass ratios (q ≡ M 2 /M 1 ) from 0.01 to 1 and at each mass ratio probing the effects of disk thickness and viscosity. We study disks with aspect ratios H/r ϵ {0.1, 0.05, 0.03} and vary both the magnitude and spatial dependence of viscosity. Although thin accretion disks have previously been found to promote rapid inspirals of equal-mass binaries, we find that gravitational torques become weaker at lower mass ratios and most binaries with 0.01 ≤ q ≤ 0.04 outspiral, which may delay the coalescence of black hole binaries formed from minor mergers and cause high-mass exoplanets to migrate outward. However, in a number of cases, the disks accreting onto binaries with mass ratios ~0.07 fail to develop eccentric modes, leading to extremely rapid inspirals. Variability in black hole accretion correlates with disk eccentricity, and we observe variability above the ~10% level even for mass ratios of 0.01. We demonstrate that the spatial dependence of the viscosity (e.g., α vs. constant ν) significantly affects the degree of preferential accretion onto the secondary, resolving discrepancies between previous studies. Colder circumbinary disks remain eccentric even at q ~ 0.01 and sustain deep, asymmetric cavities.

79 ASTRONOMY AND ASTROPHYSICS↗

Late time cosmological phase transitions 1: Particle physics models and cosmic evolution

We described a natural particle physics basis for late-time phase transitions in the universe. Such a transition can seed the formation of large-scale structure while leaving a minimal imprint upon the microwave background anisotropy. The key ingredient is an ultra-light pseudo-Nambu-Goldstone boson with an astronomically large (O(kpc-Mpc)) Compton wavelength. We analyze the cosmological signatures of and constraints upon a wide class of scenarios which do not involve domain walls. In addition to seeding structure, coherent ultra-light bosons may also provide unclustered dark matter in a spatially flat universe, omega sub phi approx. = 1.

Frieman, Joshua A.↗

Diagnosing the reionization of the universe - The absorption spectrum of the intergalactic medium and Lyman alpha clouds

The thermal and ionization evolution of a uniform intergalactic medium composed of H and He and undergoing reionization is studied. The diagnosis of the metagalactic ionizing radiation background at z of about three using metal line ratios for Lyman limit quasar absorption line systems is addressed. The use of the He II Gunn-Peterson effect to diagnose the reionization source and/or nature of the Hy-alpha forest clouds is considered.

Giroux, Mark L.↗

Utah FORGE 5-2419: Seismicity-Permeability Relationships Probed via Nonlinear Acoustic Imaging - 2024 Annual Workshop Presentation

This is a presentation on Seismicity-Permeability Relationships Probed via Nonlinear Acoustic Imaging by Pennsylvania State University, presented by Derek Elsworth. This video slide presentation discussed controls and acoustic signatures of aseismic through seismic evolution of relocation-stability-permeability on fractures in shear-reactivation as a precursor to, and a key predictor of, seismic moment magnitude of prospective triggered-seismicity. This presentation was featured in the Utah FORGE R&D Annual Workshop on August 13, 2024.

15 GEOTHERMAL ENERGY↗

Comets and life in the Universe

The notion that comets supplied the primitive Earth with the requisite chemical species for the process of chemical evolution, which is widely held to have led to the origin of life on Earth, has now gained considerable intellectual momentum since its first formulation in 1961. The role of comets in the Earth's biogenesis has been thoroughly addressed in the literature. At this time, in light of a few recent findings, we present here a concise review of this topic together with a brief discussion of the possible role of cometary material in the origin of life elsewhere in the Universe.

Oro, J.↗

The Origin and Early Evolution of Membrane Proteins

The origin and early evolution of membrane proteins, and in particular ion channels, are considered from the point of view that the transmembrane segments of membrane proteins are structurally quite simple and do not require specific sequences to fold. We argue that the transport of solute species, especially ions, required an early evolution of efficient transport mechanisms, and that the emergence of simple ion channels was protobiologically plausible. We also argue that, despite their simple structure, such channels could possess properties that, at the first sight, appear to require markedly larger complexity. These properties can be subtly modulated by local modifications to the sequence rather than global changes in molecular architecture. In order to address the evolution and development of ion channels, we focus on identifying those protein domains that are commonly associated with ion channel proteins and are conserved throughout the three main domains of life (Eukarya, Prokarya, and Archaea). We discuss the potassium-sodium-calcium superfamily of voltage-gated ion channels, mechanosensitive channels, porins, and ABC-transporters and argue that these families of membrane channels have sufficiently universal architectures that they can readily adapt to the diverse functional demands arising during evolution.

Pohorille, Andrew↗

Fundamental tests of galaxy formation theory

The structure of the universe as an environment where traces exist of the seed fluctuations from which galaxies formed is studied. The evolution of the density fluctuation modes that led to the eventual formation of matter inhomogeneities is reviewed, How the resulting clumps developed into galaxies and galaxy clusters acquiring characteristic masses, velocity dispersions, and metallicities, is discussed. Tests are described that utilize the large scale structure of the universe, including the dynamics of the local supercluster, the large scale matter distribution, and the anisotropy of the cosmic background radiation, to probe the earliest accessible stages of evolution. Finally, the role of particle physics is described with regard to its observable implications for galaxy formation.

Silk, J.↗

Gravitational waves from cosmic superstrings and gauge strings

Abstract We perform a phenomenological comparison of the gravitational wave (GW) spectrum expected from cosmic gauge string networks and superstring networks comprised of multiple string types. We show how violations of scaling behavior and the evolution of the number of relativistic degrees of freedom in the early Universe affect the GW spectrum. We derive simple analytical expressions for the GW spectrum from superstrings and gauge strings that are valid for all frequencies relevant to pulsar timing arrays (PTAs) and laser interferometers. We analyze the latest data from PTAs and show that superstring networks are consistent with 32 nHz data from NANOGrav, but are excluded by 3.2 nHz data at 3σunless the string couplingg s <0.2 or the strings evolve in only about 10% of the volume of the higher-dimensional space. We also point out that while gauge string networks are excluded by NANOGrav-15 data at 3σ, they are completely compatible with EPTA and PPTA data. Finally, we study correlations between GW signals at PTAs and laser interferometers.

Physics↗

J-PLUS: Spectral evolution of white dwarfs by PDF analysis

We estimated the spectral evolution of white dwarfs with effective temperature using the Javalambre Photometric Local Universe Survey (J-PLUS) second data release (DR2), which provides 12 photometric optical passbands over 2176 deg 2 . We analyzed 5926 white dwarfs with r ≤ 19.5 mag in common between a white dwarf catalog defined from Gaia EDR3 and J-PLUS DR2. We performed a Bayesian analysis by comparing the observed J-PLUS photometry with theoretical models of hydrogen- and helium-dominated atmospheres. We estimated the probability distribution functions for effective temperature (T eff ), surface gravity, parallax, and composition; and the probability of having a H-dominated atmosphere (p H ) for each source. We applied a prior in parallax, using Gaia EDR3 measurements as a reference, and derived a self-consistent prior for the atmospheric composition as a function of T eff . We described the fraction of white dwarfs with a He-dominated atmosphere (f He ) with a linear function of the effective temperature at 5000 < T eff < 30 000 K. We find f He = 0.24 ± 0.01 at T eff = 10 000 K, a change rate along the cooling sequence of 0.14 ± 0.02 per 10 kK, and a minimum He-dominated fraction of 0.08 ± 0.02 at the high-temperature end. We tested the obtained p H by comparison with spectroscopic classifications, finding that it is reliable. We estimated the mass distribution for the 351 sources with distance d < 100 pc, mass M > 0.45 M ⊙ , and T eff > 6000 K. The result for H-dominated white dwarfs agrees with previous studies, with a dominant M = 0.59 M ⊙ peak and the presence of an excess at M ~ 0.8 M ⊙ . This high-mass excess is absent in the He-dominated distribution, which presents a single peak. The J-PLUS optical data provide a reliable statistical classification of white dwarfs into H- and He-dominated atmospheres. We find a 21 ± 3% increase in the fraction of He-dominated white dwarfs from T eff = 20 000 K to T eff = 5000 K.

79 ASTRONOMY AND ASTROPHYSICS↗

High repetition rate mapping of the interaction between a laser plasma and magnetized background plasma via laser induced fluorescence

In this work, the laminar coupling of energy between a laser-produced plasma and a background magnetized plasma was investigated via planar laser induced fluorescence diagnostic and magnetic flux probes. Experiments performed on the Large Plasma Device at the University of California, Los Angeles, mapped out the two-dimensional spatiotemporal evolution of the laser-plasma (debris) ion velocity distribution function (VDF) to assess debris-background coupling in a sub-Alfvénic regime. The acquisition of these data necessitates high repetition rate (1 Hz) as each dataset is the accumulation of thousands of laser shots, which would not be feasible in single-shot experiments. Fully kinetic, three-dimensional particle-in-cell simulations are compared to the measured VDFs to provide a framework in which we can understand the coupling of a sub-Alfvénic plasma flow through a preformed, magnetized plasma. The simulations display the same departure from the expected gyromotion of the debris plasma as observed in the experimental data, and in conjunction with the measured magnetic field traces, have led to the direct observation of the collisionless coupling via laminar fields.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

XMP gas-rich dwarfs in nearby voids: results of BTA spectroscopy

We present the second part of results of the ongoing project aimed at searching for and studying eXtremely Metal-Poor (XMP) – adopted as those with Z gas ≲ Z ⊙ /30, or with 12+log (O/H) ≲ 7.21 dex - very gas-rich blue dwarfs in voids. They were first identified in the course of the ‘unbiased’ study of the galaxy population in the nearby Lynx–Cancer void. These very rare and unusual galaxies seem to be the best proxies of so-called Very Young Galaxies (VYGs) defined recently in model simulations by Tweed et al. To date, for 16 pre-selected void XMP candidates, using the Big Telescope Alt-azimuth (BTA), the SAO 6-m telescope, we have obtained spectra suitable for the determination of O/H. For majority of the observed galaxies, the principal line [O iii] λ4363 , used for the direct classical T e method of O/H determination, is undetected. Therefore, to estimate O/H, we use a new ‘strong-lines’ method by Izotov et al. This appears to be the most accurate empirical O/H estimator for the range of 12+log (O/H) ≲ 7.4–7.5. For objects with higher O/H, we use the semi-empirical method by Izotov & Thuan with our modification accounting for variance of the excitation parameter O 32 . Six of those 16 candidates are found, with confidence, to be XMP dwarfs. In addition, eight studied galaxies are less metal-poor, with 12+log (O/H) = 7.24–7.33, and these can also fall into the category of VYG candidates. Taking into account our recently published work and the previously known (nine prototype galaxies) XMP gas-rich void objects, the new findings increase the number of this type of galaxy known to date to a total of 19.

79 ASTRONOMY AND ASTROPHYSICS↗