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At least 613 records · Page 34

Provable bounds for noise-free expectation values computed from noisy samples

Quantum computing has emerged as a powerful computational paradigm capable of solving problems beyond the reach of classical computers. However, today’s quantum computers are noisy, posing challenges to obtaining accurate results. Here, we explore the impact of noise on quantum computing, focusing on the challenges in sampling bit strings from noisy quantum computers and the implications for optimization and machine learning. We formally quantify the sampling overhead to extract good samples from noisy quantum computers and relate it to the layer fidelity, a metric to determine the performance of noisy quantum processors. Further, we show how this allows us to use the conditional value at risk of noisy samples to determine provable bounds on noise-free expectation values. We discuss how to leverage these bounds for different algorithms and demonstrate our findings through experiments on real quantum computers involving up to 127 qubits. The results show strong alignment with theoretical predictions.

97 MATHEMATICS AND COMPUTING↗

A curated benchmark for cofolding models on kinase conformational states

Abstract Protein kinases are critical drug targets, requiring therapeutics that can modulate their active and inactive conformational states. While cofolding models can generate global folds directly from kinase sequences and ligand SMILES strings, these models have not yet been tested on their ability to recover ligand-induced-fit conformational states of the kinase proteins. Here, we introduce KinConfBench, a curated benchmark of 2225 high-quality human kinase chains to evaluate the ability of four state-of-the-art cofolding models—Boltz-2, Chai-1, Protenix, and RoseTTAFold-All-Atom—to recover both canonical and rare conformational states. We show that geometric success metrics of a ligand pose in the active site do not correlate strongly with the correct kinase conformational state, motivating a new set of dynamical benchmarks for assessing cofolding models. While all four cofolding models achieve ~60–80% prediction accuracy for kinase conformational classification, they exhibit severe mode collapse when performing multiple inferences, show negligible structural diversity in sampling induced-fit motions, and display a prevalent “apo-drift” in which most cofolding models predominantly predict the kinase to be in its ligand-free state. Our results highlight that capturing ligand-induced protein conformational diversity, not just geometric fit, is critical for next-generation structure-based drug discovery.

Sun, Kunyang↗

Uncovering novel liquid organic hydrogen carriers: a systematic exploration of chemical compound space using cheminformatics and quantum chemical methods

We present a comprehensive, in silico-based discovery approach to identifying novel liquid organic hydrogen carrier (LOHC) candidates using cheminformatics methods and quantum chemical calculations. We screened over 160 billion molecules from ZINC15 and GDB-17 chemical databases for structural similarity to known LOHCs and employed a data-driven selection criterion connecting molecular features with dehydrogenation enthalpy. This scoring criterion effectively predicts dehydrogenation enthalpies from SMILES strings, streamlining the LOHC screening process. After rigorous screening and down-selection, we compiled a database of 3000 dehydrogenation reactions for the most promising LOHC candidates, setting the stage for future selection based on kinetics and catalysis. This work demonstrates the significant impact of integrating quantum chemistry and cheminformatics in materials discovery, accelerating the selection process while reducing experimental efforts and time. By proposing new molecules as prospective LOHC candidates, our study provides a valuable resource for researchers and engineers in the development of advanced LOHC systems and showcases a successful approach for high-throughput discovery, contributing to more efficient and sustainable energy storage solutions.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Open-source generation of sigma profiles: impact of quantum chemistry and solvation treatment on machine learning performance

The combination of machine learning (ML) models with chemistry-related tasks requires the description of molecular structures in a machine-readable way. The nature of these so-called molecular descriptors has a direct and major impact on the performance of ML models and remains an open problem in the field. Structural descriptors like SMILES strings or molecular graphs lack size-independence and can be memory intensive. Machine-learned descriptors can be of low dimensionality and constant size but lack physical significance and human interpretability. Sigma profiles, which are unnormalized histograms of the surface charge distributions of solvated molecules, combine physical significance with low dimensionality and size-independence, making them a suitable candidate for a universal molecular descriptor. However, their widespread adoption in ML applications requires open access to sigma profile generation, which is currently not available. This work details the development of OpenSPGen – an open-source tool for generating sigma profiles. Also presented are studies on the effect of different settings on the efficacy of the generated sigma profiles at predicting thermophysical material properties when used as inputs to a Gaussian process as a simple surrogate ML model. We find that a higher level of theory does not translate to more accurate results. We also provide further recommendations for sigma profile calculation and use in ML models.

Salih, Fathya Y. M. [University of Notre Dame, IN ↗

Infalling ultra-faint dwarfs as emissaries of the Axiverse

Recent discoveries of ultra-faint dwarf galaxies (UFDs) infalling onto the Milky Way, namely Leo K & M at r ≃ 450 kpc, considerably strengthens the case that UFDs constitute a distinct galaxy class that is inherently smaller and fainter, and metal-poorer than the classical dwarf spheroidals (dSph). This distinction is at odds with the inherent continuity of galaxy halo masses formed under scale-free gravity for any standard dark-matter (DM) model. Here, we show that distinct galaxy classes do evolve in cosmological simulations of multiple light bosons representing the “Axiverse” proposal of string theory, where a discrete mass spectrum of axions is generically predicted to span many decades in mass. In this context, the observed UFD class we show corresponds to a relatively heavy boson of 3 × 10 −21 eV, including Leo K & M, whereas a lighter axion of 10 −22 eV comprises the bulk of DM in all larger galaxies including the dSphs. Although Leo M is larger in size than Leo K, we predict its velocity dispersion to be smaller ( ≃ 1.7 km/s) than that of Leo K ( ≃ 4.5 km/s) because of the inverse de Broglie scale dependence on momentum. This scenario can be definitively tested using millisecond pulsars close to the Galactic center, where the Compton frequencies of the heavy and light bosons imprint monotone timing residuals that may be detected by the Square Kilometre Array (SKA) on timescales of approximately one week and four months, respectively.

dark matter↗

Prediction of impact sensitivity, heat of formation and heat of explosion using atomic connectivity

In these proceedings we revisit a large collection of explosives and explosive descriptors with the goal of predicting impact sensitivity using only local atomic environments that can be deciphered from molecular SMILES strings as descriptors without utilizing empirically measured values or computationally expensive electronic structure calculations. From the original database of nearly 500 descriptors, removing empirically measured and electronic structure values decreased the number of descriptors to 135, which we reduced to 18 the most important descriptors using Random Forests. The condensed model predicted impact sensitivity with essentially the same accuracy as the existing, more complex model (R 2 = 0.788 and RSME = 0.312), while remaining applicable to all types of explosives (Peroxides, azides, C-Nitros, Nitroamines, Nitrate Esters, etc.). In addition to impact sensitivity, we proposed similar models to accurately predict values heat of formation (ΔH f ) and heat of explosion (Q), with R 2 = 0.966 and 0.916, respectively. In conclusion, the work in these proceedings allows for prediction of explosive performance and sensitivity with only chemical structure information and an estimate of density.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Strong-Weak Duality via Jordan-Wigner Transformation: Using Fermionic Methods for Strongly Correlated su(2) Spin Systems

The Jordan-Wigner transformation establishes a duality between $su(2)$ and fermionic algebras. We present qualitative arguments and numerical evidence that when mapping spins to fermions, the transformation makes strong correlation weaker, as demonstrated by the Hartree-Fock approximation to the transformed Hamiltonian. This result can be rationalized in terms of rank reduction of spin shift terms when transformed to fermions. Conversely, the mapping of fermions to qubits makes strong correlation stronger, complicating its solution when one uses qubit-based correlators. The presence of string operators poses challenges to the implementation of quantum chemistry methods on classical computers, but these can be dealt with using established techniques of low computational cost. Here, our proof of principle results for XXZ and J1-J2 Heisenberg (in 1D and 2D) indicate that the JW transformed fermionic Hamiltonian has reduced complexity in key regions of their phase diagrams, and provides a better starting point for addressing challenging spin problems.

74 ATOMIC AND MOLECULAR PHYSICS↗

Magnetic phases of spatially modulated spin-1 chains in Rydberg excitons: Classical and quantum simulations

Here, in this work, we study the magnetic phases of a spatially modulated chain of spin-1 Rydberg excitons. Using the Density Matrix Renormalization Group (DMRG) technique, we study various magnetic and topologically nontrivial phases using both single-particle properties, such as local magnetization and quantum entropy, and many-body ones, such as pair-wise Néel and long-range string correlations. In particular, we investigate the emergence and robustness of the Haldane phase, a topological phase of anti-ferromagnetic spin-1 chains. Furthermore, we devise a hybrid quantum algorithm employing restricted Boltzmann machine to simulate the ground state of such a system that shows very good agreement with the results of exact diagonalization and DMRG.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Toward transferable empirical valence bonds: Making classical force fields reactive

The empirical valence bond technique allows classical force fields to model reactive processes. However, parametrization from experimental data or quantum mechanical calculations is required for each reaction present in the simulation. We show that the parameters present in the empirical valence bond method can be predicted using a neural network model and the SMILES strings describing a reaction. This removes the need for quantum calculations in the parametrization of the empirical valence bond technique. In doing so, we have taken the first steps toward defining a new procedure for enabling reactive atomistic simulations. This procedure would allow researchers to use existing classical force fields for reactive simulations, without performing additional quantum mechanical calculations.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Classification of dynamical Lie algebras generated by spin interactions on undirected graphs

Dynamical Lie algebras (DLAs) are a versatile tool for various topics that span from the expressibility-trainability of variational quantum algorithms (VQAs), to simulation of many body Hamiltonians. Quantum gates and most of the Hamiltonians of interest consist of local interactions; therefore, the analysis of all possible DLAs generated by 1- and 2-local operators is crucial for quantum simulation and VQAs on current hardware. Previously in [R. Wiersema et al ., npj Quantum Inf. 10 , 110 (2024)], we analyzed the DLAs on linear, circular and all-to-all topologies, and obtained results about their dimensions and algebraic structure. Here, in this work, we extend our analysis into any possible hardware topology and provide a classification of all DLAs generated by Pauli strings on any undirected interaction graph. Our results indicate that the DLAs depend solely on whether the connectivity or interaction graph is bipartite or not. In addition, we find that the non-trivial polynomially scaling DLAs appear only on 1D line or circle topologies, and all other DLAs have dimensions scaling exponentially with the system size. Together with the current VQA literature, our results imply that either the majority of VQAs are non-trainable, or we are yet to understand the role of DLAs on the trainability of VQAs.

Algebraic structures↗

Fermionic mean-field dynamics for spin systems beyond free fermions

We introduce the fermionized time-dependent Hartree–Fock (fTDHF), a real-time quantum dynamics method for spin-1/2 Hamiltonians following their mapping to fermions via the Jordan-Wigner transformation. fTDHF is formally equivalent to exact dynamics in the case of free fermions, and can efficiently handle non-local string operators arising from long-range interactions via transition matrix elements between non-orthogonal Slater determinants. We show that the fTDHF method can be implemented on a classical computer with a cost that scales polynomially with system size, and linearly with the time steps. We benchmark fTDHF against exact dynamics on three separate spin-1/2 models, representing adiabatic preparation of states with long-range correlations, disorder-driven observation of many-body localization, and particle production in the Schwinger model. For each of these systems, fTDHF is shown to reproduce the qualitative dynamics generated by the exact evolutions, while maintaining a simple physical picture due to its mean-field nature.

Dutta, Rishab↗

An electron-bifurcating “plug” to a protein nanowire in tungsten-dependent aldehyde detoxification

Members of the tungsten-containing oxidoreductase (WOR) family, which contain a tungstopyranopterin (Tuco) cofactor, are typically either monomeric (WorL) or heterodimeric (WorLS). These enzymes oxidize aldehydes to the corresponding acids while reducing the redox protein ferredoxin. They have been structurally characterized mainly using WORs from hyperthermophilic archaea. The WORs of some bacteria contain three additional subunits of the BfuABC family and these chimeric WorABCSL enzymes catalyze an electron-bifurcating reaction in which aldehyde oxidation is coupled to the simultaneous reduction of ferredoxin and nicotinamide adenine dinucleotide. In human gut microbes, electron bifurcation by WorABSL is proposed to enable the detoxification of aldehydes generated from cooked foods and in the tungstocentric production of beneficial short chain fatty acids from lactate, potentially impacting health. Herein we present the high-resolution cryogenic electron microscopy (cryo-EM) structure of the WorABCSL purified from the bacteriumAcetomicrobium mobile.The structure reveals a surprising 1:3 stoichiometry between WorABC and WorSL, with the WorSL units forming a nanowire-like architecture leading from three Tuco-containing catalytic sites in WorL via strings of multiple iron-sulfur clusters in WorS to a single bifurcating WorABC core. Our structure uncovers a distinct domain arrangement that links three Tuco-dependent aldehyde oxidation sites with the bifurcation process and potentially facilitates environmental aldehyde oxidation.

Science & Technology - Other Topics↗

The cosine-sine decomposition with different-orbitals-for-different-spins determinants

We report the spin decomposition of a spin-contaminated different-orbitals-for-different-spins (DODS) wave function is formulated in terms of the Krylov space of the $\hat{S}^2$ ||operator. The number of determinants that contribute to the various projected spin eigenfunctions vertical | $\psi ; S, M \rangle$ depends on the sparsity of the orbital overlap matrix X between the α and β spatial orbitals. The cosine-sine decomposition (CSD) procedure may be applied to this overlap matrix, and the resulting redundant orbital transformations may be applied to the α and β spatial orbitals. This produces a sparse X' matrix in the transformed basis in which each row or column has either one or two nonzero elements. This sparse X' matrix simplifies the spin-decomposition procedure in three ways:1) it reduces the number of contributing determinants within the Krylov basis functions and within the projected spin functions, 2) it reduces the effective orbital dimension through elimination of the frozen core and frozen virtual orbitals, and 3) it simplifies the spin-decomposition procedure in both the original and transformed bases by limiting the Krylov space dimension. These simplifications all reduce the computational effort for the spin-decomposition process. This procedure is implemented within a string-based DODS determinant formulation and applied to spin projection of unrestricted Hartree-Fock determinants.

unrestricted Hartree-Fock↗

Baby universes and worldline field theories

The quantum gravity path integral involves a sum over topologies that invites comparisons to worldsheet string theory and to Feynman diagrams of quantum field theory. However, the latter are naturally associated with the non-abelian algebra of quantum fields, while the former has been argued to define an abelian algebra of superselected observables associated with partition-function-like quantities at an asymptotic boundary. We resolve this apparent tension by pointing out a variety of discrete choices that must be made in constructing a Hilbert space from such path integrals, and arguing that the natural choices for quantum gravity differ from those used to construct QFTs. We focus on one-dimensional models of quantum gravity in order to make direct comparisons with worldline QFT. Finally, we also restrict attention to models in which worldlines do not split apart or join together.

79 ASTRONOMY AND ASTROPHYSICS↗

Axion wormholes with massive dilaton

Abstract If Euclidean wormholes contribute meaningfully to the path integral of quantum gravity they can have important implications for particle physics and cosmology. The dominant effects arise from wormholes whose sizes are comparable to the cut-off scale of effective field theory, for which ultraviolet corrections become relevant. We study corrections to classical axion wormhole solutions in string motivated scenarios in which the dilaton partner of the axion becomes massive. We find corrections near the neck region which are consistent with a recent version of the weak gravity conjecture for axions.

Astronomy & Astrophysics↗

The universal thermodynamic properties of extremely compact objects

An extremely compact object (ECO) is defined as a quantum object without horizon, whose radius is just a small distance s outside its Schwarzschild radius. We show that any ECO of mass M in d + 1 dimensions with s << (M/m p ) 2/(d-2)(d+1) lp must have (at leading order) the same thermodynamic properties—temperature, entropy and radiation rates—as the corresponding semiclassical black hole of mass M. An essential aspect of the argument involves showing that the Tolman–Oppenheimer–Volkoff equation has no consistent solution in the region just outside the ECO surface, unless this region is filled with radiation at the (appropriately blueshifted) Hawking temperature. In string theory it has been found that black hole microstates are fuzzballs—objects with no horizon—which are expected to have a radius that is only a little larger than the horizon radius. Thus the arguments of this paper provide a nice closure to the fuzzball paradigm: the absence of a horizon removes the information paradox, and the thermodynamic properties of the semiclassical hole are nonetheless recovered to an excellent approximation.

79 ASTRONOMY AND ASTROPHYSICS↗

Observational prospects of self-interacting scalar superradiance with next-generation gravitational-wave detectors

Abstract Current- and next-generation gravitational-wave observatories may reveal new, ultralight bosons. Through the superradiance process, these theoretical particle candidates can form clouds around astrophysical black holes and result in detectable gravitational-wave radiation. In the absence of detections, constraints—contingent on astrophysical assumptions—have been derived using LIGO-Virgo-KAGRA data on boson masses. However, the searches for ultralight scalars to date have not adequately considered self-interactions between particles. Self-interactions that significantly alter superradiance dynamics are generically present for many scalar models, including axion-like dark matter candidates and string axions. We implement the most complete treatment of particle self-interactions available to determine the gravitational-wave signatures expected from superradiant scalar clouds and revisit the constraints obtained in a past gravitational-wave search targeting the black hole in Cygnus X-1. We also project the reach of next-generation gravitational-wave observatories to scalar particle parameter space in the mass-coupling plane. We find that while proposed observatories have insufficient reach to self-interactions that can halt black hole spin-down, next-generation observatories are essential for expanding the search beyond gravitational parameter space and can reach a mass and interaction scale of ∼ 10 − 13 –10 −12 eV / c 2 and ≳ 10 17 GeV, respectively.

Collaviti, Spencer (ORCID:0009000372808236)↗

Superstring-inspired particle cosmology: inflation, neutrino masses, leptogenesis, dark matter & the SUSY scale

We develop a string-inspired model for particle cosmology, based on a flipped SU(5)×U(1) gauge group formulated in a no-scale supergravity framework. The model realizes Starobinsky-like inflation, which we assume to be followed by strong reheating, with the GUT symmetry being broken subsequently by a light ‘flaton’ field whose decay generates a second stage of reheating. We discuss the production of gravitinos and the non-thermal contribution made by their decays to the density of cold dark matter, which is assumed to be provided by the lightest neutralino. We also discuss the masses of light and heavy neutrinos and leptogenesis. As discussed previously, a key r&ocirc;le is played by a superpotential coupling between the inflaton, matter and GUT Higgs fields, called λ 6 . We scan over possible values of λ 6 , exploring the correlations between the possible values of observables. We emphasize that the release of entropy during the GUT transition allows large regions of supersymmetry-breaking parameter space that would otherwise lead to severe overdensity of dark matter. Furthermore, we find that the Big Bang nucleosynthesis lower limit on the reheating temperature of ~ 1 MeV restricts the supersymmetry-breaking scale to a range O(10) TeV that is consistent with the absence of supersymmetric particles at the LHC.

79 ASTRONOMY AND ASTROPHYSICS↗