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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 613 records · Page 34
All sourcesNASA NTRSDOE OSTI
DOE OSTI2022

Streaming Statistics

In the context of a larger effort for in situ data analytics, there is a need to calculate basic statistics metrics (e.g., count, mean, median) online as new data points become available. Originally, the code for such online, or in other words streaming, statistics was part of the TALASS (Topological Analysis of Large- Scale Simulations) library. We isolated the relevant code and created a standalone library from it called Streaming Statistics. We also added an ability to serialize and deserialize the statistics objects so that the library can be used in distributed, task-based processing. To use the Streaming Statistics library, the user chooses a statistic, constructs an object for it, and then "adds" values to it, which means the statistic is augmented.

Shudler, Sergei↗
DOE OSTI2023

optimas v0.1

optimas is a Python library that can coordinate a large number of numerical simulations on high-performance computing resources, with the aim of optimizing a given simulation result. More specifically, this library is currently used for design optimization of laser-plasma particle accelerators. In this context, the performance of particle accelerator designs are often evaluated with large-scale simulation codes, and many separate simulations need to be run - with different design parameters - in order to find the most performant design. optimas facilitates this process by providing a convenient interface to advanced optimizers (e.g. Bayesian optimization), and by coordinating the execution of the different simulations on HPC resources. (This is done by leveraging the library libensemble.) Compared to other open-source optimization libraries (e.g. Ax), optimas is more tailored towards execution on DOE HPC resources (e.g. Perlmutter, Summit, etc.) and is specialized for the type of simulation codes and workflows that are used in the community of laser-plasma acceleration.

Lehe, Remi↗
DOE OSTI2024

Vistransformers Explained

The Vistransformers Explained library is a collection of python notebooks that demonstrate the internal mechanics and uses of visual-transformer (ViT) machine learning models. The code implements, with mild modifications, ViT models that have been made publicly available through publication and GitHub code. The value added by this code is in-depth explanations of the mathematics behind the sub-modules of the ViT models, including original figures. Additionally, the library contains the code necessary to implement and train the ViT models. The library does not include example training data for the models; instead, it would rely on users generating their own datasets. The code is based on the PyTorch python library. It does not include any files other than python scripts, modules, or notebooks.

Callis, Skylar↗
DOE OSTI2023

Qthreads Support for MPICH

SAND2024-00944O Qthread Support for MPICH is software that provides additions needed to enable the use of the Qthreads library. The high-performance message passing interface (MPICH) is an open-source implementation of MPI mainly developed and distributed by Argonne National Laboratory. Qthreads is a lightweight, user-level threading library developed and distributed by Sandia National Laboratories. MPICH currently supports Posix threads, Windows threads, and Argobots. This software enables parallel programs built with the MPICH implementation of MPI to use Qthreads user-level threads rather than Posix system-level threads. The software uses existing infrastructure in MPICH to interface to the Qthreads library. The existing interfaces in MPICH allow for creating, destroying, and managing the execution of multiple threads within a process and this software translates these calls to the equivalent Qthreads library functions. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525.

Ciesko, Jan↗
DOE OSTI2024

Synthetic Biology PacBio/JAWS QC Analysis (PBJ) v3.0

This software was designed as a sequence validation tool for the assembly of synthetic constructs. It analyzes FASTQ files against a list of reference sequences, combining the results from eight sequencing libraries to generate a summary, and the files needed to view the results in the Integrative Genomics Viewer (IGV) application for manual verification. This was developed for FASTQ files generated by PacBio sequencing, but could be used on any FASTQ files that do not have paired end reads. It can be used to analyze one - eight libraries at a time, and assumes that each construct sequence in the reference will be in each pool, however, this is not a requirement. This is used to identify which libraries of pooled sequences contains a perfect match, or fixable match to the reference file. This pipeline uses many freely available open source libraries, the value added is that in our application the steps of the pipeline are defined in Workflow Description Language (WDL) and run through the Cromwell workflow engine in Docker containers, for easy distribution and set up, as well as the user friendly html summary that is generated.

Simirenko, Lisa↗
DOE OSTI2024

datacenterCoolingModel

ExaDigiT is a framework for developing comprehensive digital twins of liquid-cooled supercomputers, which has three main modules: (1) a python-based Resource Allocator and Power Simulator (RAPS), (2) a Modelica-based Thermo-Fluidic cooling model, and (3) a C++-based augmented reality model built on Unreal Engine 5. The Modelica-based cooling model is primarily built-on the open-source Transient Simulation Framework of Reconfigurable Models (TRANSFORM) library and the open-source autocsm library. The library follows the templating architecture developed in the TRANSFORM and the autocsm libraries. This tool can be easily extended to model other Frontier-like liquid cooled supercomputers.

Kumar, Vineet [Oak Ridge National Laboratory (ORNL↗
DOE OSTI2022

Non-target RNA depletion strategy to improve sensitivity of next-generation sequencing for the detection of RNA viruses in poultry

PCR-based assays have become the benchmark for detecting pathogens of poultry and other livestock; however, these techniques are limited in their ability to detect multiple infecting agents, provide limited genetic information on the pathogen, and, for RNA viruses, must be reviewed frequently to assure high sensitivity and specificity. In contrast, untargeted, high-throughput sequencing can rapidly detect all infecting agents in a sample while providing genomic sequence information to allow more in-depth characterization of viruses. Although next-generation sequencing (NGS) offers many advantages, one of its primary limitations is low sensitivity to pathogens given the abundance of host and other non-target sequences in sequencing libraries. We explored methods for improving the sensitivity of NGS to detect respiratory and enteric viruses in poultry from RNA extracts of swab samples. We employed commercial and custom-designed negative enrichment strategies to selectively deplete the most abundant rRNA reads from the host and non-target bacteria; host RNA was diminished from up to 40% of total reads to as low as 3%, and the total number of reads assigned to abundant bacterial classes were reduced greatly. Our treatment resulted in up to a 700-fold increase in the number of viral reads, detection of a greater number of viral agents, and higher average genome coverage for pathogens. Depletion assays added only 2 h to the NGS library preparation workflow. Custom depletion probe design offered significant cost savings (US$7–12 per sample) compared to commercial kits (US$30–50 per sample).

Parris, D. Joshua↗
DOE OSTI2022

Rotational symmetry relation for efficient response function generation in the coarse mesh transport method COMET

The coarse mesh transport code COMET is a continuous energy hybrid stochastic-deterministic neutronics solver with high fidelity and formidable computation speed in solving reactor core problems. Its method is based on the incident flux expansion theory. In this work, we take advantage of the local geometric symmetry in many reactor cores lattices (e.g., fuel lattices and reflector blocks) to develop relations among the flux response expansion coefficients for symmetric surfaces to further improve the computational efficiency of the COMET response function generation tool (method). This is done by a rigorous derivation of the transformation matrices for the angular and spatial expansion moments resulting from a rotation of a coarse mesh by an arbitrary angle. The relations for the response coefficients for the symmetric surfaces can be then written as the Kronecker product of those transformation matrices. The method is implemented into COMET and tested on two advanced high temperature reactor (AHTR) full-length single assembly benchmark problems. The COMET results using the response function library based on the symmetry relations were compared to those using the library directly generated by continuous energy Monte Carlo for all surfaces. It was found that the eigenvalues and stripe-wise fission densities using the two libraries are in statistical agreement as expected. This indicates that the new method maintains the high fidelity of the original COMET method while improving the computational efficiency in the response function generation by 270% to 400%, depending on the local geometric symmetry. This method also reduces the size of the response function library by the same magnitude (270% to 400%). (authors)

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗
DOE OSTI2025

Quantitative infrared spectroscopy of aerosols: Mie theory modeling with experimental validation

Infrared spectroscopy is a well-established method for identifying solid, liquid, and gas-phase chemicals. Accurate infrared spectroscopic analysis requires reference libraries where library endmembers reflect all optical phenomena contributing to the observed spectra. Traditional spectral libraries most often contain molecular-based absorption spectra, but these do not account for the complex scattering effects that become significant when measuring aerosols. In this work, we combine the laboratory-derived, wavelength-dependent complex optical vectors ( n / k ) of liquid dioctyl sebacate (DOS) with Mie scattering theory and the Beer–Lambert law to generate synthetic infrared transmission spectra of aerosolized DOS. Additionally, we record experimental infrared transmission spectra using an FTIR spectrometer coupled to a simple aerosol chamber filled with a quantified number size distribution of aerosolized DOS. The modeled and measured spectra show strong agreement, with Mie scattering effects clearly altering the overall spectral shape as well as the positions and profiles of absorption features. The results demonstrate that synthetic spectra generated from n / k values can reliably capture aerosol-specific spectral behavior and thus serve as a foundation for building scalable, physics-based aerosol reference libraries to enable infrared spectroscopic detection of aerosols.

Salcido, Jessica M. O. [Pacific Northwest National↗
DOE OSTI2020

NRC Multiphysics Analysis Capability Deployment FY2020 - Part 4

This report details progress and activities of Idaho National Laboratory (INL) on the Nuclear Regulatory Commission (NRC) project “Development and Modeling Sup- port for Advanced Non-Light Water Reactors.” The tasks completed for this report are: • Task 3a: This task demonstrates the effectiveness of Griffin’s methods for interpolating cross sections and SPH correction factors as a function of control drum rotation. The Monte Carlo code Serpent is used to generate reference results. The accuracy of Griffin-calculated eigenvalues and reaction rates are studied as a function of control drum rotation for cross section and SPH factor libraries of varying fidelity. Higher-fidelity libraries require less interpolation and are therefore inherently more accurate; however, they require more computational resources to create. Overall, Griffin is able to accurately model eigenvalue and reaction rates over the full range of drum rotation using a library generated from three to five discrete drum rotations for a particular microreactor design. • Task 3c: This preliminary task successfully demonstrates the performance of a coupled neutron-photon transport calculation with Griffin using the spherical harmonics approximation. The Griffin solutions are compared to reference solutions from the continuous energy Monte Carlo codes MCNP and Serpent. Furthermore, this work also demonstrates how to prepare the neutron and photon libraries using NJOY, MCNP, and Serpent with the latest ENDF/B-VIII data for 235 U and graphite. The Griffin total energy deposition in the active core region is calculated within 0.3% of the reference, but it degrades in the reflector regions with a maximum difference of -1.5%. Overall, the results look promising and future analysis should use an improved data stream and focus on determining the potential cancellation of error within each energy group.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗
DOE OSTI2021

CSPlib - A Software Toolkit for the Analysis of Dynamical Systems and Chemical Kinetic Models

CSPlib is an open source software library for analyzing general ordinary differential equation (ODE) systems and detailed chemical kinetic ODE systems. It relies on the computational singular perturbation (CSP) method for the analysis of these systems. The software provides support for: General ODE models (gODE model class) for computing source terms and Jacobians for a generic ODE system; TChem model (ChemElemODETChem model class) for computing source term, Jacobian, other necessary chemical reaction data, as well as the rates of progress for a homogenous batch reactor using an elementary step detailed chemical kinetic reaction mechanism. This class relies on the TChem [2] library; A set of functions to compute essential elements of CSP analysis (Kernel class). This includes computations of the eigensolution of the Jacobian matrix, CSP basis vectors and co-vectors, time scales (reciprocals of the magnitudes of the Jacobian eigenvalues), mode amplitudes, CSP pointers, and the number of exhausted modes. This class relies on the Tines library; A set of functions to compute the eigensolution of the Jacobian matrix using Tines library GPU eigensolver; A set of functions to compute CSP indices (Index Class). This includes participation indices and both slow and fast importance indices.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2021

Distributed Training for High Resolution Images: A Domain and Spatial Decomposition Approach

In this work we developed two Pytorch libraries using the PyTorch RPC interface for distributed deep learning approaches on high resolution images. The spatial decomposition library allows for distributedtraining on very large images, which otherwise won’t be possible on a single GPU. The domain parallelism library allows for distributed training across multiple domain unlabeled data, by leveraging the domain separation architecture. Both of those libraries were tested on the Summit supercomputer at a moderate scale, and we are releasing the code for both of them.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2022

BCLink User Documentation

BCLink is a shared programming library providing general functionality to read temporally- and spatially-varying boundary condition data (contained in Exodus files) into MDG codes (ParaDyn and Diablo). This document is intended for prospective users of BCLink, presenting a summary of the available features of the library, including details regarding the input syntax with accompanying examples. The library’s capabilities are demonstrated through example problems run in ParaDyn, and using the BCRemap command line utility – a stand-alone preprocessing tool which leverages the native functionality provided by the BCLink library to remap surface data between dissimilar meshes.

42 ENGINEERING↗
DOE OSTI2022

Spiner vs EOSPAC6: capabilities, performance, and accuracy considerations

The Cross-Cutting Capabilities Project (XCAP) has significant interest in collecting and implementing a common set of libraries to be used across the various production hydro-codes at LANL. A common set of libraries will help facilitate comparisons between codes. In addition to minimizing variables for comparisons and physics validation, efforts toward optimization and porting of packages for future architectures will be more efficient. As part of this push Singularity is being considered as an inclusive materials interface library. One crucial part of this library is the importing, inverting, and interpolation of equation of state (EOS) data. Currently the Lagrangian Applications Project (LAP) and Safety Applications Project (SAP) are using EOSPAC6 for delivery EOS data. The Eulerian Applications Project (EAP) has historically used TEOS and more recently an implementation of Singularly via a package called Spiner for EOS interpolation. Singularity currently has the option of using several analytical EOS models, directly employing SESAME via Spiner, or directly using SESAME via EOSPAC6 (not optimized yet). Assuming Singularity moves forward as a common platform for the implementation of materials models, a decision will need to be made on which EOS interpolation package XCAP should move forward with, given resources and people are finite. We will attempt to address pros and cons of Spiner and EOSPAC6 and the trade-offs that should be considered during the decision making process. This report is intended as an ASC-PEM-EOS perspective on what is needed in an EOS interpolation package. Performance and Accuracy sections will mostly address data from comparison studies in LA-UR-22-22699.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗
DOE OSTI2022

Five years of ForTrilinos ECP

The ForTrilinos subproject of the Exascale Computing Project (ECP) was initiated to bring the capabilities and scalability of the Trilinos numerical solver collection to Fortran scientific application codes. A novel Fortran extension to the Simplified Wrapper and Interface Generator (SWIG) tool, which automatically generates Fortran bindings from existing C/C++ library code, has been applied to key Trilinos solver libraries to generate the new ForTrilinos libraries. SWIG-Fortran has additionally been used to generate new Fortran compatibility layers for additional scientific libraries and applications. This report summarizes the products and impact of the ForTrilinos subproject.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2025

Release of ENDF81SaB: ENDF/B-VIII.1-Based ACE Data Files for Thermal Scattering

On August 30, 2024, the National Nuclear Data Center (NNDC) released the ENDF/B-VIII.1 nuclear data library. The library was released in the standard Evaluated Nuclear Data File (ENDF) format. These files can be accessed on the NNDC's website (www.nndc.bnl.gov). The files provided in the thermal neutron scattering sublibrary were processed into A Compact ENDF (ACE)-formatted files, verified, and validated by the XCP-5 Nuclear Data Team, resulting in the ENDF81SaB application library. This report details the processing of these files and the quality assurance approach taken. This is not intended to be a full validation effort; rather, this library is intended to simply reproduce the released files for further validation testing by the community. The validation basis and details of the evaluations are documented in the forthcoming ``Big Paper''.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2025

Continuing Development of the Nuclear Data Processing Code AMPX [Poster]

The ENDF/B-VIII.1 evaluation library has seen a great growth in the thermal neutron scattering sub-library. The SCALE code system has traditionally approached CE transport by assuming that the CE library on disk represented the fully expanded cumulative probability distributions, conditional on exiting angle and marginal on exiting energy. While this is a complete description of the data, it comes at the potential cost of large amounts of on-disk storage. This approach was strained by several TSL files in ENDF/B-VIII.1, such as graphite, which contained data for a large number of Bragg edges. In the fully expanded probability distributions, this was found to be a disproportionately large fraction of the SCALE CE library.

GNDS↗
DOE OSTI2026

Lib81 ACE neutron sublibrary erratum for 190-198 Pt and 180m Ta

The ACE library based on the neutron-induced ENDF/B-VIII.1 sub-library, Lib81, was released in September 2025. This memorandum documents the release of 80 errata files for the Lib81 library, which fix a problem in the neutron capture γ-ray energy distributions. This Lib81 erratum does not correspond to an ENDF/B library erratum.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗