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At least 613 records · Page 34

Magic Pools: Parallel Assessment of Transposon Delivery Vectors in Bacteria

Transposon mutagenesis coupled to next-generation sequencing (TnSeq) is a powerful approach for discovering the functions of bacterial genes. However, the development of a suitable TnSeq strategy for a given bacterium can be costly and time-consuming. To meet this challenge, we describe a part-based strategy for constructing libraries of hundreds of transposon delivery vectors, which we term “magic pools.” Within a magic pool, each transposon vector has a different combination of upstream sequences (promoters and ribosome binding sites) and antibiotic resistance markers as well as a random DNA barcode sequence, which allows the tracking of each vector during mutagenesis experiments. To identify an efficient vector for a given bacterium, we mutagenize it with a magic pool and sequence the resulting insertions; we then use this efficient vector to generate a large mutant library. We used the magic pool strategy to construct transposon mutant libraries in five genera of bacteria, including three genera of the phylum Bacteroidetes .

59 BASIC BIOLOGICAL SCIENCES↗

Mitigation of External Exposure of Energy Delivery System (MEEDS).

MEEDS is a cybersecurity solution that empowers under resourced owners and operators of critical energy infrastructure to rapidly identify and detect the publicly exposed and vulnerable operational technology (OT) and other critical Industrial Control and Energy Delivery Systems.

Mylrea, Michael↗

Optimizing Energy For Delivery Drones - A Comprehensive Tool Set For Drone Energy Calculation And Drone Fleet Optimization

This tool is intended to be deployed for potential customers to compare the energy profiles across various drone types/classes. The primary factors considered were design of the drone, the weight of the drone, the weight of the payload, and how the drone is flown. It has energy comparison metrics like "Drone (A) vs Drone (B) ", "Drone vs Ground Vehicle", "Drone Energy from delivery via landing versus hovering". It also includes the ability to determine the number of drones and batteries needed to optimally deliver goods from a chosen location to a set of destinations.

Mendadhala, Rohit [Idaho National Laboratory (INL)↗

Data for Efficient Delivery of a DNA Aptamer-Based Biosensor into Plant Cells for Glucose Sensing through Thiol-Mediated Uptake

DNA aptamers have been widely used as biosensors for detecting a variety of targets. Despite decades of success, they have not been applied to monitor any targets in plants, even though plants are a major platform for providing oxygen, food, and sustainable products ranging from energy fuels to chemicals, and high-value products such as pharmaceuticals. A major barrier to progress is a lack of efficient methods to deliver DNA into plant cells. We herein report a thiol-mediated uptake method that more efficiently delivers DNA into Arabidopsis and tobacco leaf cells than another state-of-the-art method, DNA nanostructures. Such a method allowed efficient delivery of a glucose DNA aptamer sensor into Arabidopsis for sensing glucose. This demonstration opens a new avenue to apply DNA aptamer sensors for functional studies of various targets, including metabolites, plant hormones, metal ions, and proteins in plants for a better understanding of the biodistribution and regulation of these species and their functions.

Conversion↗

Wavelength domain spatial frequency modulation imaging: enabling fiber optic delivery and detection

Spatial frequency modulation imaging (SPIFI) provides a simple architecture for modulating an extended illumination source that is compatible with single pixel imaging. We demonstrate wavelength domain SPIFI (WD-SPIFI) by encoding time-varying spatial frequencies in the spectral domain that can produce enhanced resolution images, like its spatial domain counterpart, spatial domain (SD) SPIFI. However, contrary to SD-SPIFI, WD-SPIFI enables remote delivery by single mode fiber, which can be attractive for applications where free-space imaging is not practical. Finally, we demonstrate a cascaded system incorporating WD-SPIFI in-line with SD-SPIFI enabling single pixel 2D imaging without any beam or sample scanning.

47 OTHER INSTRUMENTATION↗

Effect of Antigen Shedding on Targeted Delivery of Immunotoxins in Solid Tumors from a Mathematical Model

Most cancer-specific antigens used as targets of antibody-drug conjugates and immunotoxins are shed from the cell surface (Zhang & Pastan (2008) Clin. Cancer Res. 14: 7981-7986), although at widely varying rates and by different mechanisms (Dello Sbarba & Rovida (2002) Biol. Chem. 383: 69–83). Why many cancer-specific antigens are shed and how the shedding affects delivery efficiency of antibody-based protein drugs are poorly understood questions at present. Before a detailed numerical study, it was assumed that antigen shedding would reduce the efficacy of antibody-drug conjugates and immunotoxins. However, our previous study using a comprehensive mathematical model showed that antigen shedding can significantly improve the efficacy of the mesothelin-binding immunotoxin, SS1P (anti-mesothelin-Fv-PE38), and suggested that receptor shedding can be a general mechanism for enhancing the effect of inter-cellular signaling molecules. Here, we improved this model and applied it to both SS1P and another recombinant immunotoxin, LMB-2, which targets CD25. We show that the effect of antigen shedding is influenced by a number of factors including the number of antigen molecules on the cell surface and the endocytosis rate. The high shedding rate of mesothelin is beneficial for SS1P, for which the antigen is large in number and endocytosed rapidly. On the other hand, the slow shedding of CD25 is beneficial for LMB-2, for which the antigen is small in number and endocytosed slowly.

60 APPLIED LIFE SCIENCES↗

FTICR-MS, Sensor, and Environmental Data from 5 Streams Impacted by the 2020 Holiday Farm Fire Associated with: "Spatiotemporal controls on the delivery of dissolved organic matter to streams following a wildfire"

This data package is associated with the publication "Spatiotemporal Controls on the Delivery of Dissolved Organic Matter to Streams Following a Wildfire" submitted to Geophysical Research Letters (Roebuck et al., 2022). The study aims to understand storm induced transport of pyrogenic materials to streams impacted by varying degrees of burn severity. Time series samples (24 samples in 1-hour intervals) were collected at 5 sites within the McKenzie River Watershed (Oregon, USA) whose catchment were each completely engulfed by the 2020 Holiday Farm Fire. The samples were collected in November 2020 during the first major storm pulse following the conclusion of the wildfire. Samples were characterized for dissolved organic carbon, total dissolved nitrogen, and by ultra-high resolution mass spectrometry. In situ turbidity data also collected.This data package contains 4 primary folders that include the following: 1) Metadata, 2) EnvData (Environmental Data), 3) SensorData, and 4) FTICR_SupportingData. The package contains a single file-level metadata (flmd) file. Each primary folder also contains individual data dictionaries (dd) to define and provide descriptors of column/row headers and data flags. The FTICR_SupportingData, folder 4, contains raw, unprocessed FTICR-MS Data files in addition to a csv containing processed FTICR-MS data. This package contains the following file types: csv, xml, pdf.

54 ENVIRONMENTAL SCIENCES↗

Rolling Horizon Based Temporal Decomposition for the Offline Pickup and Delivery Problem with Time Windows

The offline pickup and delivery problem with time windows (PDPTW) is a classical combinatorial optimization problem in the transportation community, which has proven to be very challenging computationally. Due to the complexity of the problem, practical problem instances can be solved only via heuristics, which trade-off solution quality for computational tractability. Among the various heuristics, a common strategy is problem decomposition, that is, the reduction of a large-scale problem into a collection of smaller sub-problems, with spatial and temporal decompositions being two natural approaches. While spatial decomposition has been successful in certain settings, effective temporal decomposition has been challenging due to the difficulty of stitching together the sub-problem solutions across the decomposition boundaries. In this work, we introduce a novel temporal decomposition scheme for solving a class of PDPTWs that have narrow time windows, for which it is able to provide both fast and high-quality solutions. We utilize techniques that have been popularized recently in the context of online dial-a-ride problems along with the general idea of rolling horizon optimization. To the best of our knowledge, this is the first attempt to solve offline PDPTWs using such an approach. To show the performance and scalability of our framework, we use the optimization of paratransit services as a motivating example. Due to the lack of benchmark solvers similar to ours (i.e., temporal decomposition with an online solver), we compare our results with an offline heuristic algorithm using Google OR-Tools. In smaller problem instances (with an average of 129 requests per instance), the baseline approach is as competitive as our framework. However, in larger problem instances (approximately 2,500 requests per instance), our framework is more scalable and can provide good solutions to problem instances of varying degrees of difficulty, while the baseline algorithm often fails to find a feasible solution within comparable compute times.

Kim, Youngseo↗

Machine Learning for Slow Spill Regulation in the Fermilab Delivery Ring for Mu2e

A third-integer resonant slow extraction system is being developed for the Fermilab’s Delivery Ring to deliver protons to the Mu2e experiment. During a slow extraction process, the beam on target is liable to experience small intensity variations due to many factors. Owing to the experiment’s strict requirements in the quality of the spill, a Spill Regulation System (SRS) is currently under design. The SRS primarily consists of three components - slow regulation, fast regulation, and harmonic content tracker. In this presentation, we shall present the investigations of using Machine Learning (ML) in the fast regulation system, including further optimizations of PID controller gains for the fast regulation, prospects of an ML agent completely replacing the PID controller using supervised learning schemes such as Long Short-Term Memory (LSTM) and Gated Recurrent Unit (GRU) ML models, the simulated impact and limitation of machine response characteristics on the effectiveness of both PID and ML regulation of the spill. We also present here nascent results of Reinforcement Learning efforts, including continuous-action soft actor-critic methods, to regulate the spill rate.

43 PARTICLE ACCELERATORS↗

FPGA-Based Spill Regulation System for the Muon Delivery Ring at Fermilab

The Muon to Electron Experiment (Mu2e) requires a uniform beam profile from the Muon Delivery Ring to meet their experimental needs. A specialized Spill Regulation System (SRS) has been developed to help achieve consistent spill uniformity. The system is based on a custom-designed carrier board featuring an Arria 10 SoC, capable of executing real-time feedback control. The FPGA processes beam pulses of approximately 200 ns every 1.695 $μ$s, allowing for continuous monitoring of the extracted spill intensity through fast bunch integration. The system directly controls three quadrupole magnets, which work in conjunction with sextupole magnets to achieve third-order resonant extraction. Furthermore, the board interfaces with Fermilab's Accelerator Control Network (ACNET), enabling operators to modify spill regulation settings in real-time via the control network while providing diagnostic waveforms. These waveforms help operators monitor the process and fine-tune the feedback mechanisms. This paper presents an overview of the board's architecture and its initial progress toward regulating beam extraction. This initial version of the regulation system aims to evaluate baseline performance to inform future system improvements.

Berlioz, J. R. [Fermilab]↗

Mu2e resonant extraction regulation system simulation in delivery ring

Mu2e is an upcoming experiment at Fermilab that relies on the slowly extracted 8 GeV proton beam from the Delivery Ring. The experiment imposes strong requirements on the spill uniformity. To address these requirements, the fast spill regulations system is being developed and commissioned. To inform this development and optimize the system performance we are carrying out the detailed simulations of the regulation process. The simulation includes the effect of six harmonic sextupoles that excite the third-integer resonance and three fast ramping quadrupoles that drive the horizontal tune to 29/3. The components of spill regulation system are designed to mitigate long-term drifts in the beam, ensuring stable operation over extended timescales, as well as addresses rapid variations within single spill. In this study, we review the regulation system design, simulation of the slow regulation, and the fast regulation PID regulation to curtail random variations in the extraction rate that could occur within a single spill.

Narayanan, Aakaash [Fermilab]↗

The Need for a Life Cycle Assessment of Drone-Based Commercial Package Delivery

Commercial freight drones are currently illegal in the U.S. Consequently, commercial interests such as Amazon, Inc. will be lobbying for new regulatory allowances in the coming years. The Federal Aviation Administration and other government entities must balance safety and other public interests against the potential commercial benefits of UAV freight. Controversy over commercial UAV’s has so far centered on the privacy implications of the devices, which are significant. However, no assessment has yet been made of the energy and environmental implications of widespread UAV-based delivery. Such an accounting of environmental impacts would inform current regulatory discussions about whether and how much commercial drone traffic should be permitted.

25 ENERGY STORAGE↗

Accelerating the Delivery of Home Performance Upgrades through a Synergistic Business Model

Achieving Building America energy savings goals (40% by 2030) will require many existing homes to install energy upgrades. Engaging large numbers of homeowners in building science-guided upgrades during a single remodeling event has been difficult for a number of reasons. Performance upgrades in existing homes tend to occur over multiple years and usually result from component failures (furnace failure) and weather damage (ice dams, roofing, siding). This research attempted to: A) understand the homeowner's motivations regarding investing in building science based performance upgrades; B) determining a rapidly scalable approach to engage large numbers of homeowners directly through existing customer networks; and C) access a business model that will manage all aspects of the contractor-homeowner-performance professional interface to ensure good upgrade decisions over time. The solution results from a synergistic approach utilizing networks of suppliers merging with networks of homeowner customers. Companies in the $\$ $400 to $\$ $800 billion home services industry have proven direct marketing and sales proficiencies that have led to the development of vast customer networks. Companies such as pest control, lawn care, and security have nurtured these networks by successfully addressing the ongoing needs of homes. This long-term access to customers and trust established with consistent delivery has also provided opportunities for home service providers to grow by successfully introducing new products and services like attic insulation and air sealing. The most important component for success is a business model that will facilitate and manage the process. The team analyzes a group that developed a working model.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Software Build and Delivery Systems

This presentation deals with the hierarchy of software build and delivery systems. One of the goals is to maximize the success rate of new users and developers when first trying your software. First impressions are important. Early successes are important. This also reduces critical documentation costs. This is a presentation focused on computer science and goes into detail about code documentation.

97 MATHEMATICS AND COMPUTING↗

Assembly and Delivery of Rabbit Capsules for Irradiation of Silicon Carbide Cladding Tube Specimens in the High Flux Isotope Reactor

Neutron irradiation of silicon carbide (SiC)-based fuel cladding under a high radial heat flux presents a critical challenge for SiC cladding concepts in light water reactors (LWRs). Fission heating in the fuel provides a high heat flux through the cladding, which, combined with the degraded thermal conductivity of SiC under irradiation, results in a large temperature gradient through the thickness of the cladding. The strong temperature dependence of swelling in SiC creates a complex stress profile in SiCbased cladding tubes as a result of differential swelling. The Nuclear Science User Facilities (NSUF) Program within the US Department of Energy Office of Nuclear Energy is supporting research efforts to improve the scientific understanding of the effects of irradiation on SiC cladding tubes. Ultimately, the results of this project will provide experimental validation of multi-physics models for SiC-based fuel cladding during LWR operation. The first objective of this project is to irradiate tube specimens using a previously developed design that allows for irradiation testing of miniature SiC tube specimens subjected to a high radial heat flux. The previous “rabbit” capsule design uses the gamma heating in the core of the High Flux Isotope Reactor (HFIR) to drive a high heat flux through the cladding tube specimens. A compressible aluminum foil allows for a constant thermal contact conductance between the cladding tubes and the rabbit housing despite swelling of the SiC tubes. To allow separation of the effects of irradiation from those due to differential swelling under a high heat flux, a new design was developed under the NSUF program. This design allows for irradiation of similar SiC cladding tube specimens without a high radial heat flux. This report briefly describes the irradiation experiment design concepts, summarizes the irradiation test matrix, and reports on the successful delivery of six rabbit capsules to the HFIR. Rabbits of both low and high heat flux configurations have been assembled, welded, evaluated, and delivered to the HFIR along with a complete quality assurance fabrication package. These rabbits contain a wide variety of specimens including monolith tubes, SiC fiber SiC matrix (SiC/SiC) composites, duplex specimens (inner composite, outer monolith), and specimens with a variety of metallic or ceramic coatings on the outer surface. The rabbits are targeted for insertion during HFIR cycle 475, which is scheduled for September 2017.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Recommendations for Filler Material Composition and Delivery Method for Bench-Scale Testing

This report supplements Joint Workplan on Filler Investigations for DPCs (SNL 2017) providing new and some corrected information for use in planning Phase 1 laboratory testing of slurry cements as possible DPC fillers. The scope description is to "Describe a complete laboratory testing program for filler composition, delivery, emplacement in surrogate canisters, and post-test examination. To the extent possible specify filler material and equipment sources." This report includes results from an independent expert review (Dr. Arun Wagh, retired from Argonne National Laboratory and contracted by Sandia) that helped to narrow the range of cement types for consideration, and to provide further guidance on mix variations to optimize injectability, durability, and other aspects of filler performance.

36 MATERIALS SCIENCE↗

Assembly and Delivery of Rabbit Capsules for Irradiation of Reinforced Radiation Resistant SiC-SiC Composites in the High Flux Isotope Reactor

The development of reinforced radiation resistant composites presents a critical challenge for in-vessel component application in advanced high temperature reactors. In its pursuit of this, Physical Optics Corporation (POC) is interested in developing a silicon carbide (SiC)-based ceramic matrix composite (CMC) with improved thermal conductivity in a high neutron radiation environment. The US Department of Energy (DOE) is supporting research efforts to develop Advanced Reactor Technology. Ultimately, the results of this project will determine the viability of using SiC matrix composites in hot structures in advanced high temperature reactors. The first objective of this project is to irradiate torsion and bend bar specimens in the High Flux Isotope Reactor (HFIR) and develop an initial data set to evaluate the evolution of composite mechanical strength, dimensional changes, and thermal conductivity. This report briefly describes the irradiation experiment design concepts, summarizes the irradiation test matrix, and reports on the successful delivery of three rabbit capsules to the HFIR. Rabbits of both torsion and bend bar configurations have been assembled, welded, evaluated, and delivered to the HFIR along with a complete quality assurance fabrication package.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Economy and Emissions Impacts from Solazyme Fuel in UPS Delivery Vehicles

To improve understanding of the potential fuel economy and emissions impacts from switching a fleet of vehicles from conventional petroleum diesel to synthetic renewable diesel, the National Renewable Energy Laboratory (NREL) conducted fuel economy and emissions analyses at NREL's Renewable Fuels and Lubricants (ReFUEL) Laboratory. Representative test cycles were developed based on real-world data from six package delivery vehicles and six class 8 day-cab tractors operated by UPS in the Dallas, Texas, area. A three-week in-field data collection period yielded 170 days of real-world vehicle operations data that NREL used to select representative standard drive cycles for testing. Fuel economy and emissions tests at the ReFUEL Laboratory showed that, in general, when switching from conventional diesel to renewable diesel observed changes in tailpipe carbon dioxide (CO2), fuel consumption, and fuel economy are primarily driven by changes in fuel properties such as the hydrogen-to-carbon ratio, density, and lower heating value (LHV). The vehicles tested with the renewable diesel showed a consistent 4.2% reduction in tailpipe CO2 emissions, but a 3.5%-4.8% reduction in fuel economy compared with local pump diesel. This is consistent with the 4.2% lower volumetric LHV of the sourced renewable diesel compared to the pump diesel. The UPS package car tested on renewable diesel also demonstrated a 4.1% oxides of nitrogen (NOx) reduction. NOx emissions from the UPS selective-catalyst-reduction-equipped tractor were an order of magnitude lower than the package car but showed relatively higher variability in results from cycle to cycle.

33 ADVANCED PROPULSION SYSTEMS↗