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All sources NASA NTRS DOE OSTI

DOE OSTI2020

Deconstructing the Soil Microbiome into Reduced-Complexity Functional Modules

The soil microbiome is an invaluable component of the biosphere and critical for ecosystem functions, including biogeochemical cycling, soil-atmosphere gas exchange, degradation of toxic compounds, and promotion of plant growth and stress resistance/resilience. An improved understanding of the soil microbiome will help with predicting how these processes respond to external perturbations, and with harnessing beneficial aspects of the soil microbiome for agronomic applications such as crop amendments. However, the extensive taxonomic and functional diversity inherent within the soil microbiome hinders efficient analysis of this system. Microbial biodiversity in soils is orders of magnitude greater than other commonly studied systems such as the human gut microbiome (Blum, Zechmeister-Boltenstern, and Keiblinger 2019; Berendsen, Pieterse, and Bakker 2012). Thousands of microbial taxa may be found in a single gram of soil (Roesch et al. 2007), and high rates of gene flow and mutation further promote microbial diversification (Sergaki et al. 2018). Concomitantly, functional diversity in soil is similarly extensive. Soil is a heterogeneous mixture of microenvironments with defined physical and chemical attributes (Bach et al. 2018), within which numerous microbial guilds of distinct life-strategies and metabolic capacities can be found (Perez-Garcia, Lear, and Singhal 2016; H.-S. Song et al. 2014). Furthermore, the soil microbiome harbors a significant fraction of rare and/or quiescent members (Blagodatskaya and Kuzyakov 2013) that exist below the threshold of detection of current technologies. Such rare taxa may make significant contributions to process rates (Shade and Gilbert 2015; Dawson et al. 2017), but their scarcity complicates their identification and analysis. Finally, the vast amounts of information generated through holistic analyses of soil communities represent an intense computational burden (Scholz, Lo, and Chain 2012; Prosser 2015) that precludes assessment of the complete functional and taxonomic diversity contained in this ecosystem.

Naylor, Dan T.↗

DOE OSTI2021

Ecosystems and Networks Integrated with Genes and Molecular Assemblies (ENIGMA): Component 5: Imaging Protein Conformations, Shapes & Assemblies in Solution & Administration project (Final Scientific/Technical Report, Subcontract No. 6974584)

We set ambitious goals to examine microorganism communities and measure both their chemical input and output as a read out of specific biochemical activity. These scientific goals are driving the development of sophisticated algorithms to analyze large amounts of experimental measurements made using high throughput technologies to explain and predict how the environment influences biological function at multiple scales and how the microbial systems in tum modify the environment. By examining how bacteria communities rely on symbiotic metabolic relationships for survival and reproductive success, and how these relationships consequently affect their biochemical capabilities. This was accomplished using state-of-the-art mass spectrometry-based methods, and metabolic fingerprinting approaches with a high degree of chemical specificity and sensitivity. During this period the original effort transitioned and was consolidated into what is now ENIGMA, the efforts on technology development expanded to include more untargeted metabolomics and its application to organisms on a systems level.

59 BASIC BIOLOGICAL SCIENCES↗

NASA NTRS2013

Microradiometers Reveal Ocean Health, Climate Change

When NASA researcher Stanford Hooker is in the field, he pays close attention to color. For Hooker, being in the field means being at sea. On one such research trip to the frigid waters of the Arctic, with a Coast Guard icebreaker looming nearby and the snow-crusted ice shelf a few feet away, Hooker leaned over the edge of his small boat and lowered a tethered device into the bright turquoise water, a new product devised by a NASA partner and enabled by a promising technology for oceanographers and atmospheric scientists alike. Color is a function of light. Pure water is clear, but the variation in color observed during a visit to the beach or a flight along a coastline depends on the water s depth and the constituents in it, how far down the light penetrates and how it is absorbed and scattered by dissolved and suspended material. Hooker cares about ocean color because of what it can reveal about the health of the ocean, and in turn, the health of our planet. "The main thing we are interested in is the productivity of the water," Hooker says. The seawater contains phytoplankton, microscopic plants, which are the food base for the ocean s ecosystems. Changes in the water s properties, whether due to natural seasonal effects or human influence, can lead to problems for delicate ecosystems such as coral reefs. Ocean color can inform researchers about the quantities and distribution of phytoplankton and other materials, providing clues as to how the world ocean is changing. NASA s Coastal Zone Color Scanner, launched in 1978, was the first ocean color instrument flown on a spacecraft. Since then, the Agency s ocean color research capabilities have become increasingly sophisticated with the launch of the SeaWiFS instrument in 1997 and the twin MODIS instruments carried into orbit on NASA s Terra (1999) and Aqua (2002) satellites. The technology provides sweeping, global information on ocean color on a scale unattainable by any other means. One issue that arises from satellite observation, however, is that the instruments must be continuously calibrated over time to maintain the quality of the data they gather from orbit. To validate and calibrate the satellites, researchers must also gather data at sea level.

Source record↗

DOE OSTI2025

Molecular diversity of dissolved organic matter reflects macroecological patterns in river networks

Deciphering dissolved organic matter (DOM) molecular complexity is crucial for understanding ecosystem function. Using the continental-scale Worldwide Hydrobiogeochemistry Observation Network for Dynamic Rivers Systems (WHONDRS) Fourier-transform ion cyclotron resonance mass spectrometry (FTICR-MS) dataset, we reveal fundamental scaling patterns of DOM chemodiversity with watershed characteristics. Analysis of 54 river sites shows local and regional watershed features significantly influence DOM chemodiversity (2500–8718 unique formulae), exhibiting consistent scaling patterns across compound classes and a novel latitudinal gradient (decreasing diversity with increasing latitude). Scaling relationships for DOM composition vary by compound class. Crucially, the scaling parameters (B, baseline chemodiversity; Z, sensitivity) are linearly interrelated. This B–Z relationship is most robust for potentially bio-labile carbohydrates (coefficient of determination R 2 ≈ 0.85), diminishing for recalcitrant, plant-derived molecules (such as lignin), and indicates (potential) biolability-dependent coupling between baseline diversity and environmental responsiveness. These quantitative scaling relationships, with scaling exponents ranging from − 2.1 to 2.2 across compound classes, enable prediction of DOM composition across watersheds, offering a framework to understand ecosystem responses to environmental change. This research bridges biogeochemistry and ecology, providing tools to anticipate molecular transformations across scales.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2018

Impact of hydrologic boundaries on microbial planktonic and biofilm communities in shallow terrestrial subsurface environments

Subsurface environments contain a large proportion of planetary microbial biomass and harbor diverse communities responsible for mediating biogeochemical cycles important to groundwater used by human society for consumption, irrigation, agriculture and industry. Within the saturated zone, capillary fringe and vadose zones, microorganisms can reside in two distinct phases (planktonic or biofilm), and significant differences in community composition, structure and activity between free-living and attached communities are commonly accepted. However, largely due to sampling constraints and the challenges of working with solid substrata, the contribution of each phase to subsurface processes is largely unresolved. Here, we synthesize current information on the diversity and activity of shallow freshwater subsurface habitats, discuss the challenges associated with sampling planktonic and biofilm communities across spatial, temporal and geological gradients, and discuss how biofilms may be constrained within shallow terrestrial subsurface aquifers. We suggest that merging traditional activity measurements and sequencing/-omics technologies with hydrological parameters important to sediment biofilm assembly and stability will help delineate key system parameters. Ultimately, integration will enhance our understanding of shallow subsurface ecophysiology in terms of bulk-flow through porous media and distinguish the respective activities of sessile microbial communities from more transient planktonic communities to ecosystem service and maintenance.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2011

Final Technical Report: Controlled Hydrogen Fleet and Infrastructure Demonstration and Validation Project

This report summarizes the work conducted under U.S. Department of Energy (DOE) under contract DE-FC36-04GO14285 by Mercedes-Benz & Research Development, North America (MBRDNA), Chrysler, Daimler, Mercedes Benz USA (MBUSA), BP, DTE Energy and NextEnergy to validate fuel cell technologies for infrastructure, transportation as well as assess technology and commercial readiness for the market. The Mercedes Team, together with its partners, tested the technology by operating and fueling hydrogen fuel cell vehicles under real world conditions in varying climate, terrain and driving conditions. Vehicle and infrastructure data was collected to monitor the progress toward the hydrogen vehicle and infrastructure performance targets of $2.00 to 3.00/gge hydrogen production cost and 2,000-hour fuel cell durability. Finally, to prepare the public for a hydrogen economy, outreach activities were designed to promote awareness and acceptance of hydrogen technology.

02 PETROLEUM↗

NASA NTRS2019

Freshwater Requirements of Large-Scale Bioenergy Plantations for Limiting Global Warming to 1.5°C

Limiting mean global warming to well below 2 °C will probably require substantial negative emissions (NEs) within the 21st century. To achieve these, bioenergy plantations with subsequent carbon capture and storage (BECCS) may have to be implemented at a large scale. Irrigation of these plantations might be necessary to increase the yield, which is likely to put further pressure on already stressed freshwater systems. Conversely, the potential of bioenergy plantations (BPs) dedicated to achieving NEs through CO2 assimilation may be limited in regions with low freshwater availability. This paper provides a first-order quantification of the biophysical potentials of BECCS as a negative emission technology contribution to reaching the 1.5 °C warming target, as constrained by associated water availabilities and requirements. Using a global biosphere model, we analyze the availability of freshwater for irrigation of BPs designed to meet the projected NEs to fulfill the 1.5 °C target, spatially explicitly on areas not reserved for ecosystem conservation or agriculture. We take account of the simultaneous water demands for agriculture, industries, and households and also account for environmental flow requirements (EFRs) needed to safeguard aquatic ecosystems. Furthermore, we assess to what extent different forms of improved water management on the suggested BPs and on cropland may help to reduce the freshwater abstractions. Results indicate that global water withdrawals for irrigation of BPs range between ~400 and ~3000 km(exp 3) yr(exp -1), depending on the scenario and the conversion efficiency of the carbon capture and storage process. Consideration of EFRs reduces the NE potential significantly, but can partly be compensated for by improved on-field water management.

Stenzel, Fabian↗

NASA NTRSDate not supplied

Robotic Manipulation Testbeds with HPSC

Interoperability and scalability of robotic manipulators will be key to develop and sustain a lunar surface and cislunar ecosystem. From in-space servicing, assembly, and manufacturing (ISAM) to logistics, maintenance, and science operations, robotic manipulation is a critical NASA capability need and the demand for high-performance spaceflight computing will only rise as robotic tasks become more autonomous. With increased complexity, testbeds for research, feasibility studies, and technology demonstrations will be essential. The Dexterous Robotics Team at NASA Johnson Space Center has established multiple robotic manipulation testbeds taking a supervised autonomous remote operations approach and plans to infuse High-Performance Spaceflight Computing (HPSC) to emulate the flight environment and close the gap between space technology development and flight operations.

Alex Sowell↗

NASA NTRSDate not supplied

NASA's Implementation of Cloud Services for Human Space Flight

Cloud is a tried-and-true technology used throughout United States government agencies, including the National Aeronautics and Space Administration (NASA). With reliable results and infrequent downtimes, cloud allows for secure remote access, customizability, and streamlined monitoring options, creating an environment for better data integrity and availability. As NASA increasingly migrates functions to the cloud, the Space Communications and Navigation Program (SCaN) program has been investigating how this capability can be leveraged to provide communication services to its users and customers. Currently, missions such as NASA-ISRO Synthetic Aperture Radar (NISAR), Plankton, Aerosol, Cloud, ocean Ecosystem (PACE), and Roman Space Telescope (RST) are planned to incorporate cloud into their data delivery architecture. However, SCaN is looking to expand further. This conversion to using cloud services allows for greater availability of mission data for both robotic and human space flight (HSF)missions. The SCaN program and the Near Space Network (NSN) are working to consolidate resources and create a cloud environment suitable for the entirety of the SCaN program network architecture. SCaN is in the process of finalizing its cloud architecture and soon will be implementing cloud services. The new services used will adhere to federal regulations including Federal Risk and Authorization Management Program (FedRAMP), which is built upon National Institute of Standards and Technology (NIST)documentation. While keeping in mind these security requirements, an auxiliary objective of the cloud integration is to ensure the most cost-efficient solution; providing a scalable, robust and resilient system. Using cloud services, NASA will gain access to better centralized monitoring and management features, along with customizable services on a pay-per-use plan. With the ever-growing NASA mission data volume needs, maintaining ample storage space is another major constraint. Processing and storing such large amounts of data, on the order of terabytes a day, requires dynamic processing capability which is inherently a strength of cloud computing. By routing this data from ground stations through the cloud, there will be greater ease of access for both SCaN and the user community. Artificial intelligence and other built-in cloud functions can also enhance efficiency, improving data processing time. Thereby also allowing for better data availability. As we look to the future of cloud services, NASA will continue to leverage capabilities that will benefit NASA’s ability to provide cost-effective communication services. This paper further outlines the evolution of cloud use by SCaN in the context of Human Space Flight.

cloud storage↗

DOE OSTI2023

Demonstrate FARM supervisory capabilities for a thermal energy storage problem for the DETAIL facility: IES Simulation Ecosystem Control System Development

The goal of the power dispatch problem for an Integrated Energy System (IES) is to adjust the power output and the heat flow of each component to maximize the profitability of the whole unit. Facilities that can integrate real-time digital signals, mock nuclear power, thermal energy storage and industrial heat use via high-temperature electrolysis were constructed at INL to support the research activities. The Dynamic Energy Technology and Integration Laboratory (DETAIL) houses the Microreactor Agile Non-nuclear Experimental Test Bed (MAGNET) and the Thermal Energy Distribution System (TEDS). In this report, the hierarchical control system architecture proposed in June 2023 milestone for the flexible operation of DETAIL facility is finalized and demonstrated. A brief description of the components and the corresponding Dymola models from the HYRBID repository is first provided. Then, the current control strategy is presented. In particular, the approach for generating the set-point trajectories to be fed to the PI controllers is analyzed, and its limits were identified. To preserve safe operation over both long-time and real-time horizons, the integration of a Supervisory Control layer embedding a modified version of FARM (Feasible Actuator Range Modifier) module is proposed. FARM is a component of the RAVEN-based FORCE framework designed to support HERON module at optimizing the operation of IES units. The proposed control system for DETAIL foresees FARM to be applied twice, i.e., the original version (“FARM-Validator”) aiding the solution of the power dispatch problem, and a modified version (“FARM-Supervisory”) coordinating the PID controllers. Despite the kernel of the two modules is the same, their tasks are quite different. The former intervenes at the beginning of each hour to prevent constraint violations over long time periods, the latter addresses real-time control tasks and monitors the response of constrained variables at a much finer time resolution. A tentative procedure for training the embedded Digital Twins with the experimental data is also proposed. Finally, the capabilities of the designed architecture and the impact of the added Supervisory Control layer are demonstrated by simulating a representative power dispatch scenario.

25 ENERGY STORAGE↗

DOE OSTI2019

Exploring Energy-Efficient and Sustainable Urban Mobility Strategies: An Initial Framework to Curate Data/Models, Measure Performance, and Diffuse Innovation: Preprint

Many cities across the United States seek to understand the maturity of data and models that are available to help manage challenges, opportunities, and uncertainties associated with the shifts in technologies, human behaviors and sustainable urban mobility strategies. One key question identified for smart city action planning includes how to best shape continuous improvements for urban populations at the intersection of mobility, energy, and quality of life? With the emerging megatrends of urbanization (more than 70% of world population in cities by 2050), on-demand shared mobility, vehicle electrification, and automated vehicles, initial 'urban science' studies to date have demonstrated the potential and need for maturing the related data and model ecosystems and on-going performance measurement across multiple urban system goals: e.g., from more mobility, clean and efficient energy use, accessibility and safety to less air pollution, traffic, and resource-intensive urban sprawl. To build on emerging literature and understand city responses to disruptive change, this initial study engages researchers and practitioners across four smart city finalists (Columbus, Denver, Austin and Portland) that competed in the U.S. Department of Transportation (DOT) Smart City Challenge. The initial results emphasize the need for a suite of datasets and diverse analytical approaches that support U.S. Department of Energy (DOE) relevant research with cities. Considering desirable energy and mobility outcomes as a first step to advancing smart city solutions strategies, we systematically review approaches of and shortcomings in four U.S. cities, and suggest improvements in three areas: measurement, modeling effectiveness of new mobility technologies, and data-driven governance.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

DOE OSTI2019

Environmental co-benefits and adverse side-effects of alternative power sector decarbonization strategies

A rapid and deep decarbonization of power supply worldwide is a pivotal element of any strategy for limiting global warming to well below 2 °C. Previous studies have shown substantial flexibility in technology choice for achieving near carbon-free electricity supply. Here we combine scenarios from integrated assessment models with forward-looking life-cycle assessment to explore how alternative power sector decarbonization strategies compare on the system level in terms of non-climate environmental impacts. While all strategies yield major environmental co-benefits, we find that the scale of co-benefits as well as profiles of adverse side-effects depend strongly on technology choice. Mitigation scenarios focusing on wind and solar power are more effective in reducing human health impacts compared to those focusing on nuclear and CCS, while inducing a more pronounced shift away from fossil toward mineral resource depletion. Conversely, an increase in land requirements, chiefly for bioenergy, exacerbates non-climate ecosystem damage from power supply in all decarbonization scenarios.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2026

Microbial inoculants for soil restoration: A Risk-Proportional Stewardship Framework Integrating Strain-Resolved Genomics and Adaptive Governance

Global soil degradation and increasing reliance on chemical inputs threaten agricultural sustainability, driving interest in microbial inoculants as tools for soil restoration. These biological products have the potential to enhance nutrient cycling, improve soil structure, and support plant resilience, but their environmental release raises important safety and stewardship considerations. Here, we propose a risk-proportional framework for the responsible deployment of microbial inoculants grounded in release-based stewardship. The framework integrates genome-resolved strain identification, exclusionary hazard screening, bioassay-based risk triage, ecological testing under realistic conditions, and monitored field deployment. Drawing on evidence from microbial ecology and invasion biology, we highlight how inoculants can alter resident microbial communities, influence ecosystem function, and, in some cases, facilitate gene flow, underscoring the need for risk assessment. We further outline a federated, genome-informed data infrastructure to support traceability, cross-jurisdiction learning, and adaptive management. Together, this approach provides a scalable and scientifically grounded pathway to balance innovation and safety, enabling microbial technologies to contribute to soil restoration and climate-resilient agriculture.

Edlund, Anna [OATH Inc]↗

DOE OSTI2022

The 5 Cs of Agrivoltaic Success Factors in the United States: Lessons from the InSPIRE Research Study

The concept of agrivoltaics (combining agriculture and solar photovoltaics technologies on the same land in novel configurations) has emerged as an approach to mitigate conflicts between solar and agricultural activities by providing mutual benefits and added values to each sector. The U.S. Department of Energy has supported agrivoltaics research since 2015 through its Innovative Solar Practices Integrated with Rural Economies and Ecosystems (InSPIRE) research project (National Renewable Energy Laboratory 2022). The InSPIRE project is the most comprehensive coordinated research effort on agrivoltaics in the United States and has examined opportunities and tradeoffs at over 25 sites across the country that span crop production, pollinator habitat, ecosystem services, animal husbandry, and d. Integrating research sites with active commercial agricultural operations can introduce unique challenges for conducting research. This synthesis aims to highlight the technical and non-technical insights from InSPIRE agrivoltaic field research sites from 2015-2021 to support i) appropriate deployment of agrivoltaic projects; ii) more successful research on agrivoltaics; and iii) more effective partnerships on agrivoltaic projects. The synthesized lessons discussed here are focused less on specific case study outcomes (i.e., the percent change in crop yield in an agrivoltaics configuration), and instead more on the elements that enable and facilitate agrivoltaics projects to be installed and operated along with research to be conducted at those sites. We find that there are some insights that are applicable across all types of agrivoltaic projects, while ecosystem service projects and crop production agrivoltaic projects can often have other unique considerations.

14 SOLAR ENERGY↗

DOE OSTI2023

Electric Vehicle Lithium-Ion Battery Life Cycle Management

There is no question that electric vehicles (EVs), which are key for addressing climate change impacts from the transportation sector, are quickly gaining popularity and availability. With limits and other challenges related to the supply of critical battery minerals, maximizing the use of EV batteries and ensuring recovery of battery minerals is imperative. Therefore, proper end-of-life-cycle management (reuse and recycling) of these batteries must be part of the EV ecosystem from the perspective of both the supply chain and environmental footprint. Second use of batteries for energy storage systems extends the initial life of these resources and provides a buffer until economical material recovery facilities are in place. Although there are multiple pathways to recycling and recovery of materials, new recovery technologies are moving toward commercially available hydrometallurgy and promising direct recycling, which analysis has shown has the lowest overall carbon footprint. Strategically locating these plants close to battery collection further reduces transportation and thus recycling and recovering costs. Proper life cycle management could alleviate future lithium-ion battery materials supply chains for EVs. Governments and other stakeholders around the world have started initiatives and proposed regulations to address the challenges associated with life cycle management of EV lithium batteries. Finally, as manufacturers are increasingly faced with the likelihood of such extensive regulatory requirements, attention should be given to new designs, sales, and service models that can reduce life cycle management costs.

25 ENERGY STORAGE↗

DOE OSTI2024

Electric Vehicles: A Sustainable Solution for Transportation Systems

The imperative for strong and rapid emissions reductions to mitigate global warming and enhance air quality necessitates a transition to net-zero emissions. This shift requires significant changes throughout the entire energy supply-demand ecosystems, tailored to various sectors. Transportation stands as the least-diversified energy sector and the largest source of U.S. GHG emissions. As the primary enabler for vehicle decarbonization when paired with clean electricity, electric vehicles (EVs) will play a pivotal role in the future. This talk summarizes current status of EV technologies and markets, future projections, and opportunities associated with a conversion to EV for all on-road vehicles. Moreover, EVs are poised to drive substantial growth in electricity demand and presents a unique opportunity to provide demand-side flexibility that is crucial for future renewable-dominated electricity systems. Smart integration of EVs can strengthen the grid, reducing costs and enhancing resilience.

ADVANCED PROPULSION SYSTEMS,POWER TRANSMISSION AND↗

DOE OSTI2023

Baltimore Ecosystem Study: Soil atmosphere fluxes of carbon dioxide, nitrous oxide and methane, 1998 - ongoing

The Baltimore Ecosystem Study (BES) established a network of long-term permanent biogeochemical study plots in 1998. These plots provide long-term data on vegetation, soil and hydrologic processes in the key ecosystem types within the urban ecosystem. The network of study plots includes forest plots (upland and riparian), chosen to represent the range of forest conditions in the area and grass plots (to represent home lawns). Plots are instrumented with lysimeters (drainage and tension) to sample soil solution chemistry, time domain reflectometry probes to measure soil moisture, dataloggers to measure and record soil temperature, and trace gas flux chambers to measure the flux of carbon dioxide, nitrous oxide and methane from soil to the atmosphere. Measurements of in situ nitrogen mineralization, nitrification and denitrification were made at approximately monthly intervals from Fall 1998 - Fall 2000. Detailed vegetation characterization (all layers) was done in summer 1998 and 2015. Data from these plots has been published in Groffman et al. (2006, 2009), Groffman and Pouyat (2009), Savva et al. (2010), Costa and Groffman (2013), Duncan et al. (2013), Waters et al. (2014), Ni and Groffman (2018), Templeton et al. (2019). Literature Cited Costa, K.H. and P.M. Groffman. 2013. Factors regulating net methane flux in urban forests and grasslands. Soil Science Society of America Journal 77:850 - 855. Duncan, J. M., L. E. Band, and P. M. Groffman. 2013. Towards closing the watershed nitrogen budget: Spatial and temporal scaling of denitrification. Journal of Geophysical Research Biogeosciences 118:1-5; DOI: 10.1002/jgrg.20090 Groffman PM, Pouyat RV, Cadenasso ML, Zipperer WC, Szlavecz K, Yesilonis IC,. Band LE and Brush GS. 2006. Land use context and natural soil controls on plant community composition and soil nitrogen and carbon dynamics in urban and rural forests. Forest Ecology and Management 236:177-192. Groffman, P.M., C.O. Williams, R.V. Pouyat, L.E. Band and I.C. Yesilonis. 2009. Nitrate leaching and nitrous oxide flux in urban forests and grasslands. Journal of Environmental Quality 38:1848-1860. Groffman, P.M. and R.V. Pouyat. 2009. Methane uptake in urban forests and lawns. Environmental Science and Technology 43:5229-5235. DOI: 10.1021/es803720h. Ni, X. and P.M. Groffman. 2018. Declines in methane uptake in forest soils. Proceedings of the National Academies of Science of the United States of America 115:8587-8590. Savva, Y., K. Szlavecz, R. V. Pouyat, P. M. Groffman, and G. Heisler. 2010. Effects of land use and vegetation cover on soil temperature in an urban ecosystem. Soil Science Society of America Journal 74:469-480. Templeton, L., M.L. Cadenasso, J. Sullivan, M. Neel and P.M. Groffman. 2019. Changes in vegetation structure and composition of urban and rural forest patches in Baltimore from 1998 to 2015. Forest Ecology and Management. In press. Waters, E.R., J.L. Morse, N.D. Bettez and P.M. Groffman. 2014. Differential carbon and nitrogen controls of denitrification in riparian zones and streams along an urban to exurban gradient. Journal of Environmental Quality 43:955–963.

Groffman, Peter M↗

DOE OSTI2021

Novel and Emerging Capabilities that Can Provide a Holistic Understanding of the Plant Root Microbiome

In recent years, the root microbiome (i.e., microorganisms growing inside, on, or in close proximity to plant roots) has been shown to play an important role in plant health and productivity. Despite its importance, the root microbiome is challenging to study because of its complexity, heterogeneity, and subterranean location. Fortunately, root microbiome research has seen a tremendous influx of novel technologies (e.g., imaging tools, robotics, and molecular analyses), experimental platforms (e.g., micro- and mesocosms), and data integration, modeling, and prediction tools in the past decade that have greatly increased our ability to dissect the complex network of interactions between above- and belowground environmental parameters, plants, bacteria, and fungi that dictate soil and broader ecosystem health. Herein, we discuss methods that are currently used in root microbiome research and that can be expanded to phytobiome research in general ranging from laboratory studies to mesocosm-scale studies and, finally, to field studies; evaluate their relevance to ecosystem studies; and discuss future root microbiome research directions.

59 BASIC BIOLOGICAL SCIENCES↗