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At least 595 records · Page 33

Fixed-target serial crystallography at the Structural Biology Center

Serial synchrotron crystallography enables the study of protein structures under physiological temperature and reduced radiation damage by collection of data from thousands of crystals. The Structural Biology Center at Sector 19 of the Advanced Photon Source has implemented a fixed-target approach with a new 3D-printed mesh-holder optimized for sample handling. The holder immobilizes a crystal suspension or droplet emulsion on a nylon mesh, trapping and sealing a near-monolayer of crystals in its mother liquor between two thin Mylar films. Data can be rapidly collected in scan mode and analyzed in near real-time using piezoelectric linear stages assembled in an XYZ arrangement, controlled with a graphical user interface and analyzed using a high-performance computing pipeline. Here, the system was applied to two β-lactamases: a class D serine β-lactamase from Chitinophaga pinensis DSM 2588 and L1 metallo-β-lactamase from Stenotrophomonas maltophilia K279a.

59 BASIC BIOLOGICAL SCIENCES↗

CrossLink: Meshing a 3D part from a STEP file [Slides]

This example shows how to use CrossLink to create a mesh for a 3D geometry part read in from a STEP file. A STEP file (Standard for the Exchange of Product data) is a common file format used for 3D modelling that can be written out from a CAD program (e.g., Creo Parametric). Being able to read and mesh STEP file geometries is essential for meshing parts from engineering models. Creating the mesh typically involves: (1) Importing the geometry; (2) Creating geometry groups; (3) Assigning curves and surfaces to the geometry groups; (4) Building a topology; (5) Applying geometric and mesh constraints; and (6) Generating the final mesh. Current issues with this process in CrossLink include: (1) The GUI does not display trimmed surfaces; (2) The user must manually create and assign geometry groups; and (3) The user must be aware of duplicate curves and surfaces from the CAD model.

97 MATHEMATICS AND COMPUTING↗

3D Reality Energy Modeling Software

The team will combine Bentley Systems’ ContextCapture and extend Oak Ridge National Laboratory’s building energy modeling capabilities in order to create digital twins of buildings that allow simulation-informed improvement for energy efficiency and demand response in the design and operation of the built environment. Bentley Systems’ ContextCapture software processes data from 3D laser scanning and photographs (through photogrammetry) to create a photorealistic, 3D mesh with a scale of individual objects to building to city-sized. This capability easily provides city-level visualization models and platforms where sustainable design alternatives are readily evaluated. Oak Ridge National Laboratory (ORNL) serves the U.S. Dept. of Energy (DOE) as one of three core laboratories developing building energy modeling tools EnergyPlus and OpenStudio. ORNL’s AutoBEM software (bit.ly/AutoBEM) can process imagery (satellite, aerial, and street level), LiDAR, cartographic layers, tax assessor’s data, and other data sources to extract building footprints, height, window-to-wall ratio, building type, vintage, and other building properties. AutoBEM has created 178,368 building energy models that were empirically validated with 15-minute whole-building electrical data from a utility.

97 MATHEMATICS AND COMPUTING↗

Mesh holder for serial crystallography

The invention provides a device for immobilizing and shipping crystals and for data collection via serial crystallography, the device having a first planar substrate defining a first transversely extending aperture, wherein the first substrate has a first laterally facing surface; a second planar substrate defining a second transversely extending aperture coaxial with the first aperture, wherein the second substrate has a second laterally facing surface; a third planar substrate and a fourth planar substrate positioned between the first and second substrates such that the first planar substrate, the second planar substrate, the third planar substrate and the fourth planar substrate are parallel; and a means for reversibly applying axial pressure to the first and second laterally facing surfaces so as to compress the third and fourth substrates together.

Lavens, Alex A.↗

CAVE: A computer code for two-dimensional transient heating analysis of conceptual thermal protection systems for hypersonic vehicles

A digital computer code CAVE (Conduction Analysis Via Eigenvalues), which finds application in the analysis of two dimensional transient heating of hypersonic vehicles is described. The CAVE is written in FORTRAN 4 and is operational on both IBM 360-67 and CDC 6600 computers. The method of solution is a hybrid analytical numerical technique that is inherently stable permitting large time steps even with the best of conductors having the finest of mesh size. The aerodynamic heating boundary conditions are calculated by the code based on the input flight trajectory or can optionally be calculated external to the code and then entered as input data. The code computes the network conduction and convection links, as well as capacitance values, given basic geometrical and mesh sizes, for four generations (leading edges, cooled panels, X-24C structure and slabs). Input and output formats are presented and explained. Sample problems are included. A brief summary of the hybrid analytical-numerical technique, which utilizes eigenvalues (thermal frequencies) and eigenvectors (thermal mode vectors) is given along with aerodynamic heating equations that have been incorporated in the code and flow charts.

Rathjen, K. A.↗

The computation of mesh configurations for three-dimensional flow analysis

A geometry modeling method was developed to define three-dimensional mesh configurations, which were expressed by the set of surface intersections with a coordinate mesh. These configurations define bodies for transonic potential-flow computation in simple physical coordinates. Various configurations were prepared for 3-D potential flow analysis, including many bare inlet models in cylindrical coordinates. Trimmed surface models were used to prepare nacelle installation configurations. A variety of ducts and mixers were represented. Analytically defined mesh/surface intersections were compared with similar data obtained from the corresponding surface model. Parameters for an analytic surface definition from mesh-surface intersections obtained from a model of the surface were produced. In both studies the modeling accuracy was shown to be compatible with the flow analysis requirements. This technique fulfills the requirements of the associated three-dimensional potential-flow analysis. It preserves the flow analysis method's superior flexibility for adapting to unusual geometries. The geometry modeling technique is supported by a sufficient set of tools for effective use by general users, and sufficient accuracy was demonstrated.

Gibson, S. G.↗

Assessment of the CTF subchannel code for modeling a large-break loss-of-coolant accident reflood transient

With increased industry interest in extending reactor operating cycles, the Nuclear Energy Advanced Modeling and Simulation (NEAMS) program has been investigating the behavior of high-burnup fuel during design basis accidents such as the large-break loss-of-coolant accident (LBLOCA) with consideration for risk of fuel fragmentation, relocation, and dispersal (FFRD). As part of that activity, the NEAMS subchannel thermal/ hydraulics (T/H) code, CTF, is being used for modeling of LBLOCA and to determine the impact of subchannel resolution on results. Although CTF includes a wide range of models for LBLOCA conditions, the code has not been used for this application while maintained at Oak Ridge National Laboratory (ORNL) until now. Therefore, here, in this work, a preliminary assessment of several of these models was performed using openly available reflood experimental data from the Flooding Experiments in Blocked Arrays (FEBA) tests. One coarse mesh and one fine mesh model were set up in CTF for high and low flooding rate tests performed in the unblocked FEBA facility. A coarse TRACE model was set up to be as consistent as possible with the coarse CTF model to allow for code-to-code benchmarking. The assessment shows a tendency of the codes to over-predict peak cladding temperature (PCT) near the top of the bundle and to quench early. Advanced spacer grid models were shown to improve upper bundle predictions in CTF. The resolved CTF model over-predicted PCT by a larger degree in the center channels in the low-flooding rate test, and it is believed that the radiative heat transfer model, which was not used in this study, may be needed to correct this over-prediction. Finally, this work demonstrates the importance of the droplet model in determining quench time and vapor temperature and PCT prediction, which necessitates a more in-depth validation of these models in the future.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Separating Physics and Dynamics Grids for Improved Computational Efficiency in Spectral Element Earth System Models

Previous studies have shown that atmospheric models with a spectral element grid can benefit from putting physics calculations on a relatively coarse finite volume grid. Here we demonstrate an alternative high-order, element-based mapping approach used to implement a quasi-equal-area, finite volume physics grid in E3SM. Unlike similar methods, the new method in E3SM requires topology data purely local to each spectral element, which trivially allows for regional mesh refinement. Simulations with physics grids defined by 2 × 2, 3 × 3, and 4 × 4 divisions of each element are shown to verify that the alternative physics grid does not qualitatively alter the model solution. The model performance is substantially affected by the reduction of physics columns when using the 2 × 2 grid, which can increase the throughput of physics calculations by roughly 60%–120% depending on whether the computational resources are configured to maximize throughput or efficiency. A pair of regionally refined cases are also shown to highlight the refinement capability.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Graph convolutional networks applied to unstructured flow field data

Abstract Many scientific and engineering processes produce spatially unstructured data. However, most data-driven models require a feature matrix that enforces both a set number and order of features for each sample. They thus cannot be easily constructed for an unstructured dataset. Therefore, a graph based data-driven model to perform inference on fields defined on an unstructured mesh, using a graph convolutional neural network (GCNN) is presented. The ability of the method to predict global properties from spatially irregular measurements with high accuracy is demonstrated by predicting the drag force associated with laminar flow around airfoils from scattered velocity measurements. The network can infer from field samples at different resolutions, and is invariant to the order in which the measurements within each sample are presented. The GCNN method, using inductive convolutional layers and adaptive pooling, is able to predict this quantity with a validation R 2 above 0.98, and a Normalized Mean Squared Error below 0.01, without relying on spatial structure.

Ogoke, Francis (ORCID:0000000224327783)↗

Hydrodynamic Analysis and Optimization of Aquantis Marine Turbine: Cooperative Research and Development (Final Report)

The primary aim of this proposal is to improve the accurate prediction of hydrodynamic performance and dynamic load responses of the AQ10 floating axial-flow tidal turbine with a tri-cat mooring configuration. The validation of reduced-order modeling approaches with high-fidelity model will be implemented. Additionally, the frequency response domain, Response Amplitude Floating Wind (RAFT) toolbox plus an optimizer expanded for marine hydrokinetic turbines under the Submarine Hydrokinetic And Riverine Kilo-megawatt. Systems (SHARKS) program will be used for designing and exploring different key design parameters (platform dimension, mooring layout and its parameters) of next marine hydrokinetic (MHK) turbine generation.

16 TIDAL AND WAVE POWER↗

Quiet wind tunnel

Simple and inexpensive technique suppresses background noise generated by pores in wind tunnel wall lining and makes aerodynamic data more accurate and reliable. Porous walls are covered with wire-mesh screen. Screen offers smoother surface to airflow and damps vortexes and resonance caused by wall perforations; yet it provides enough open area for perforations to cancel shock waves generated by model.

Howard, P. W.↗

Phased arrays for satellites and the TDRSS antennas

The design and performance of satellite phased-array systems are examined by considering several specific antennas built for spacecraft use. Particular consideration is given to: (1) the JARED (Jammer Reduction Antenna System) antenna, and adaptive phased array which can be used to null jammer signals while providing coverage to specific user areas; (2) the algorithm used in the JARED antenna; and (3) a technique that can be used to detect and locate jammers. The antennas used by the Tracking and Data Relay Satellite System (TDRSS) are then described. A significant aspect of the TDRSS is the multiple access antenna which is a 30-element phased array, providing a single steered beam on transmit and the ability to receive data from 20 simultaneous users. Also included on the TDRSS is a mesh deployable reflector and a C-band and K-band communications system.

Imbriale, W. A.↗

Elastic-plastic models for multi-site damage

This paper presents recent developments in advanced analysis methods for the computation of stress site damage. The method of solution is based on the p-version of the finite element method. Its implementation was designed to permit extraction of linear stress intensity factors using a superconvergent extraction method (known as the contour integral method) and evaluation of the J-integral following an elastic-plastic analysis. Coarse meshes are adequate for obtaining accurate results supported by p-convergence data. The elastic-plastic analysis is based on the deformation theory of plasticity and the von Mises yield criterion. The model problem consists of an aluminum plate with six equally spaced holes and a crack emanating from each hole. The cracks are of different sizes. The panel is subjected to a remote tensile load. Experimental results are available for the panel. The plasticity analysis provided the same limit load as the experimentally determined load. The results of elastic-plastic analysis were compared with the results of linear elastic analysis in an effort to evaluate how plastic zone sizes influence the crack growth rates. The onset of net-section yielding was determined also. The results show that crack growth rate is accelerated by the presence of adjacent damage, and the critical crack size is shorter when the effects of plasticity are taken into consideration. This work also addresses the effects of alternative stress-strain laws: The elastic-ideally-plastic material model is compared against the Ramberg-Osgood model.

Actis, Ricardo L.↗

Assessment of Near-Field Sonic Boom Simulation Tools

A recent study for the Supersonics Project, within the National Aeronautics and Space Administration, has been conducted to assess current in-house capabilities for the prediction of near-field sonic boom. Such capabilities are required to simulate the highly nonlinear flow near an aircraft, wherein a sonic-boom signature is generated. There are many available computational fluid dynamics codes that could be used to provide the near-field flow for a sonic boom calculation. However, such codes have typically been developed for applications involving aerodynamic configuration, for which an efficiently generated computational mesh is usually not optimum for a sonic boom prediction. Preliminary guidelines are suggested to characterize a state-of-the-art sonic boom prediction methodology. The available simulation tools that are best suited to incorporate into that methodology are identified; preliminary test cases are presented in support of the selection. During this phase of process definition and tool selection, parallel research was conducted in an attempt to establish criteria that link the properties of a computational mesh to the accuracy of a sonic boom prediction. Such properties include sufficient grid density near shocks and within the zone of influence, which are achieved by adaptation and mesh refinement strategies. Prediction accuracy is validated by comparison with wind tunnel data.

Casper, J. H.↗

Simulations of Low Mach Number Reactive Flows Coupled with Electric Fields

Applying electric fields to flames can provide an effective, non-invasive control of the combustion process. In this work, an algorithm recently introduced to handle the interactions between reactive flows and an electric field is extended to handle multiple dimensions and adaptive mesh refinement (AMR), and applied to a series of laminar flames. Experimental data allows to validate the ability of the algorithm to capture the mechanisms driving the flame response to electric fields.

electric fields↗

Simulations of Low Mach Number Reactive Flows Coupled with Electric Fields: Preprint

Applying electric fields to flames can provide an effective, non-invasive control of the combustion process. In this work, an algorithm recently introduced to handle the interactions between reactive flows and an electric field is extended to handle multiple dimensions and adaptive mesh refinement (AMR), and applied to a series of laminar flames. Experimental data allows to validate the ability of the algorithm to capture the mechanisms driving the flame response to electric fields.

electric field↗

Development of Preliminary VERA-CS Crud Induced Localized Corrosion Modeling Capability

The objective of this milestone was to develop a crud-induced localized corrosion (CILC) screening capability in VERA-CS using existing codes and capabilities that had been developed in the Consortium for Advanced Simulation of Light Water Reactors (CASL) as part of the efforts to resolve the crud challenge problem. The milestone work focused on improving existing CASL software and implementing clad corrosion modeling into VERA-CS. Clad corrosion modeling was implemented by creating an application interface (API) in the Cicada software so that its clad heat transfer and corrosion models could be used in VERA-CS. Cicada was coupled to the subchannel code CTF for solving crud and corrosion growth. Additionally, a clad corrosion model was added directly to CTF to serve as an alternate approach. The rod thermal hydraulic reconstruction (ROTHCON) process, which is used for capturing computational fluid dynamics (CFD)-predicted rod-surface heat and turbulence behavior that can impact crud-induced power shift (CIPS) and CILC prediction, was also implemented into VERA-CS. Usability improvements were made to this feature, which was developed over several previous milestones, so that the VERA-CS user can link spacer grids in a VERA-CS model to an applicable pregenerated spacer grid data file if available. Several assessments were performed to demonstrate the proper functioning of the new capability. Sensitivity studies were performed to demonstrate the effect of crud lithium content, oxide thermal conductivity, Cicada mesh refinement, and ROTHCON coupling mesh refinement on predicted amounts of crud and oxide growth. A full-scale demonstration was performed by running Seabrook Cycle 5 with the CILC capability. Some general observations were made from the assessments. It was observed that predicted corrosion thickness is less than anticipated for CILC cases, so further work is needed to better understand and improve the corrosion modeling. Refining the coupling mesh in the ROTHCON process leads to increased corrosion and crud thickness, which can affect where crud and corrosion grow, how thick it gets, and how many rods experience crud and corrosion growth. Results indicate that applying the ROTHCON process and refining the coupling mesh leads to only a slight increase in total core maximum crud and corrosion thickness, but it leads to a significant increase in the number of rods with a maximum thickness that surpasses a set threshold value (i.e., more rods grow thicker corrosion and crud). Computational performance of the simulation is degraded by a factor of 5{6 with high coupling mesh refinement. The impact of the ROTHCON coupling mesh refinement on total core crud mass is less significant; however, using the ROTHCON process with CFD-generated data over the Yao{Hochreiter{Leech (YHL) model in CTF leads to significantly different amounts of total core crud mass. Future work on the CILC screening capability will include model improvement and validation, development and testing of a CILC-risk screening criteria, and performance improvements.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Portable interactive visualization of large-scale simulations in geotechnical engineering using Unity3D

Development in large-scale geotechnical engineering simulation places tremendous demand for efficient visualization of such simulation data. This study presents a lightweight software tool, i.e. Geotechnical Interactive Visualization (GIV), as a solution to this challenge, which achieves efficient interactive visualization of large-scale simulations data in geotechnical engineering. Visualization data flow and algorithms specifically optimized for common geotechnical engineering applications are implemented in GIV. GIV can visualize geotechnical structure models with time-varying attributes attached to mesh with fixed topology, and also models with time-varying mesh topologies but no attributes attached, the two most common visualization tasks in geotechnical engineering. Furthermore, challenges for large-scale simulation data visualization, including parallel simulation data redundancy, massive data size, dynamic user interaction, and portability are overcome via specifically designed algorithms for simulation data preprocessing and optimized visualization modules using the powerful 3D rendering and interactive game engine Unity3D. Comparison of GIV with several widely used visualization tools for the visualization of large-scale idealized datasets and realistic geotechnical simulations highlights the visualization efficiency, smooth interactivity, and lightweight features of GIV.

42 ENGINEERING↗