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At least 595 records · Page 33

Measures of Holographic Correlation: Discovery, Interpretation, Application (Final Report)

The main goals of this project were twofold: (1) to find measures of quantum correlations that are amenable to interpretation in a holographic context, and use these measures to develop a more detailed understanding of holography itself and (2) To use insights developed in a holographic setting to better understand the theory of quantum information in more traditional (nonholographic) settings.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Interpretation of borehole strain measurements using surrogate modeling-based optimization

Interpreting strain data measured during well testing requires inverting poroelastic forward models set up to represent an aquifer or reservoir. One approach is to use stochastic methods to conduct the inversion. Subsurface parameters such as elastic modulus, permeability, and geometry of heterogeneities are estimated by searching the parameter space. This is feasible, but cumbersome, requiring more than a week of computation using many hundreds of computer nodes in one of our earlier analyses. This motivated us to consider alternative methods, including an artificial neural network (ANN) as a surrogate model.

Roudini, Soheil↗

Interpreting and Accelerating Transformers for Jet Tagging

Attention-based transformers are ubiquitous in machine learning applications from natural language processing to computer vision. In high energy physics, one central application is to classify collimated particle showers in colliders based on the particle of origin, known as jet tagging. In this work, we study the interpretatbility and prospects for acceleration of Particle Transformer (ParT), a state-of-the-art model, leverages particle-level attention to improve jet-tagging performance. We analyzing ParT's attention maps and particle-pair correlations in the eta-phi plane, revealing intriguing features, such as a binary attention pattern that identifies critical substructure in jets. These insights enhance our understanding of the model's internal workings and learning process and hint at ways to improve its efficiency. Along these lines, we also explore low-rank attention, attention alternatives, and dynamic quantization to accelerate transformers for jet tagging. With quantization, we achieve a 50% reduction in model size and a 10% increase in inference speed without compromising accuracy. These combined efforts enhance both the performance and the interpretability of transformers in high-energy physics, opening avenues for more efficient and physics-driven model designs.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

The Essence of Cryptol: A Denotational Cryptol Interpreter in Coq for Foundational Assurances for Quantum Resistant Cryptosystems

Systems of the utmost consequence need a means to establish authenticity of software and data. Cryptosystems implement authentication, but can be vulnerable to cryptographic and implementation attacks. With the threat of quantum cryptographic attacks, “post-quantum” cryptosystems (PQCs) must be henceforth used in these systems. However, the new cryptography needs new ways to, rigorously and machine-checkably, prove systems free of vulnerabilities. We propose a retargetable capability to rapidly instantiate proven correct postquantum cryptosystems through novel proof-carrying synthesis and proof-automation technique, extending those proven successful on existing systems. This capability is crucial to meeting the cryptographic requirements for future high-consequence systems. Since specifications for high consequence cryptography are presently captured in a domain specific language known as Cryptol. While this can enable convenient fully automated reasoning about Cryptol specificaitons and implementations via the Software Analysis Workbench (SAW), Cryptol has expressivity gaps, so that cryptosystems with probabilistic programming features like Falcon cannot be fully expressed in the language. Moreover, SAW’s automation fails for programs and specificaitons with inductive and recursive structure, as in the Sphincs+ PQC. Finally, Cryptol and SAW together represent some 200,000 lines of unverified Haskell, so that the any guarantees about high consequence cryptography are presently contingent on a large, unverified, yet trusted computing base. The first step of the larger project of agile, assured crpytography is therefore to provide a formal, mechanized semantics for Cryptol, so that the specifications expressed by cryptographers in Cryptol can be reasoned about and compiled into performant implementations with a foundational, machine checkable certificate of correctness. This report describes our work on this first step, culminating in the design of a certified denotational interpreter, in Coq, for core Cryptol.

97 MATHEMATICS AND COMPUTING↗

Interpreting Forced Oscillation Notifications from ESAMS: General Guidance for Reliability Coordinators

The Eastern Interconnection Situational Awareness Monitoring System (ESAMS) project demonstrated the feasibility of aggregating synchrophasor measurements from across an interconnection, analyzing them, and providing real-time wide-area situational awareness to system operators who may have excellent visibility within their footprint but lack an interconnection-wide view. An application within ESAMS that has garnered industry interest involves detecting forced oscillations visible across multiple areas, identifying the region where the oscillation originated from, quantifying the uncertainty in source localization results, and notifying users in real-time if the detected oscillation amplitudes cross a specified threshold. It is expected that system operators will utilize their internal SCADA/EMS/synchrophasor systems in conjunction with information provided by ESAMS to take effective mitigation actions if forced oscillation notifications are received. This report provides some general guidance on how the ESAMS information can be used for source localization and coordination among multiple reliability coordinators; and also identifies potential enhancements to ESAMS notifications for improved interpretability.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Learning quantum computers' errors using interpretable neural networks

Learning and reducing the errors and noise in quantum computing systems is necessary for achieving quantum computation’s promise. However, rapid advances in experimental quantum computing are making this task increasingly difficult, because state-of-the-art systems now contain hundreds of qubits and many characterization techniques are hard to apply at this scale. Furthermore, complex kinds of errors in these systems, such as crosstalk and non-Markovian effects, must be understood and decreased, but these errors are challenging to study with most existing methods. In this project, we explored using neural networks for scalable characterization of complex errors in quantum computers. We proposed and demonstrated characterizing a quantum computer’s errors with neural networks that have interpretable parameters corresponding to the rates of different kinds of errors, within a sparse Lindbladian parameterization for errors. To enable scaling to many qubit systems, these networks then predict how these errors combine within quantum circuits and impact their outcomes using an efficient approximations. We demonstrated these networks ability to learn coherent crosstalk errors and context-dependent errors in a simulated 4-qubit system.

97 MATHEMATICS AND COMPUTING↗

Exploring the Whole Set of Accurate Sparse Interpretable Models

In data science applications, there are often many models that fit the data well. This phenomenon was called the Rashomon Effect by Leo Breiman. The set of good models is called the Rashomon Set, and the goal of this project is to locate, store, and study the Rashomon sets for classes of interpretable models, including decision trees and generalized additive models.

97 MATHEMATICS AND COMPUTING↗

One Earth Energy Seismic Interpretation

The objectives of the Illinois Storage Corridor (ISC) project are to accelerate commercial deployment of carbon capture utilization and storage at two individual sites and receive approvals for Underground Injection Control (UIC) Class VI permits for construction at each site (ISC Project Narrative, 2020). As part of this project, and as part of the subsurface geologic characterization, 2D seismic data was acquired at both sites. This report summarizes the findings from the 2D and 3D seismic interpretation at the One Earth Energy site near Gibson City, Illinois. The seismic data confirms the stratigraphic continuity of the Mt. Simon Arkose Zone storage interval and the Eau Claire confining unit across the project area. The seismic data also indicates that there are faults that transect the Mt. Simon Arkose Zone Sandstone storage reservoir within the modeled CO 2 plume (for more detailed information, see Faults and Fractures section of One Earth Energy Class VI Permit applications). However, the seismic data also shows that there are no faults within the modeled CO 2 plume that transect the confining unit Eau Claire Formation. The faults that transect the Mt. Simon Arkose Zone Sandstone storage reservoir all tip out in the Lower Mt. Simon Formation and do not reach the overlying Eau Claire confining unit. A small 3D survey acquired around the One Earth Energy #1 characterization well confirms these findings.

20 FOSSIL-FUELED POWER PLANTS↗

Prairie State Generating Company 2D Seismic Interpretation

The objectives of the Illinois Storage Corridor (ISC) project are to accelerate commercial deployment of carbon capture utilization and storage at two individual sites and receive approvals for Underground Injection Control (UIC) Class VI permits for construction at each site (ISC Project Narrative, 2020). As part of this project, and as part of the subsurface geologic characterization, two-dimensional (2D) seismic data was acquired at both sites. This report summarizes the findings from two phases of 2D acquisition and seismic interpretation at the Prairie State Generating Company site near Marissa, Illinois. The seismic data indicates the presence of three faults that completely transect the storage and confining units. The initial 2021 2D seismic acquisition revealed the presence of a feature two miles east of the Lively Grove #1 characterization well. The feature is a polyphase fault with a component of strike-slip motion, forming a small positive flower structure. The second phase of 2D seismic acquisition in 2022 constrained the maximum extent of the fault, indicating it has a relatively limited length. Other 2022 seismic lines revealed the presence of two other faults that transect the storage and confining units in the southwest and northeast portions of the 2D seismic acquisition area. The 2021 and 2022 2D seismic surveys have identified three specific locations within the project area that may have an elevated risk of out of zone CO 2 migration due to faulting. Further technical work will be needed to quantify this risk and determine how and if this risk will impact the placement of CO 2 injection wells across the project area.

01 COAL, LIGNITE, AND PEAT↗

FAIR Data and Interpretable AI Framework for Architectured Metamaterials (Final Report)

This research program established a transformative framework for the discovery and design of mechanical metamaterials, which are architected structures engineered to control physical phenomena like sound and vibration in ways natural materials cannot. To overcome the traditional reliance on trial-and-error, the project developed an interpretable Artificial Intelligence (AI) framework that moves beyond "black box" models to reveal the specific geometric patterns—such as "unit-cell templates"—that govern a material’s performance. A major breakthrough was the development of a hierarchical design method, which allows a single material to block vibrations across multiple frequency ranges simultaneously by layering patterns at different scales without them interfering with one another. This was further expanded to include irregular, graph-based designs that use spanning tree algorithms to ensure structural connectivity while allowing for customized, direction-dependent properties like stiffness and acoustic impedance. Beyond design, the project addressed the practicalities of real-world production by developing uncertainty quantification techniques that account for manufacturing defects and material variability, reducing the need for expensive physical testing by orders of magnitude. To speed up the discovery process, the team implemented Gaussian Process Regression and other surrogate models that provide accurate performance predictions at a fraction of the traditional computational cost. The AI-generated designs were successfully validated through fabrication of physical samples and wave propagation experiments, confirming their ability to accurately guide or reflect waves as predicted. By contributing these tools and high-quality FAIR benchmark datasets to the wider scientific community, this work provides a scalable foundation for advancing technologies in aerospace vibration control, medical imaging, and noise reduction.

36 MATERIALS SCIENCE↗

Conceptual Interpretation of First and Second Kinds of Errors at Management Mode Selection under Conditions of Its Possible Crisis State

Errors in the selection of management practices at an enterprise confronting the prospect of crisis are considered: specifically, the adoption of standard management during a crisis; or crisis management when no crisis exists. By analogy with classical approaches in probability theory and operational research, such errors are interpreted as errors of the first and second kind. The basic problems arising from such errors are identified, and some measures are proposed for reducing their likelihood. The results should prove useful to managers at industrial enterprises, consulting firms, developers of management systems, and the faculty at universities and staff-training centers.

99 GENERAL AND MISCELLANEOUS↗

Model for Interpreting Discordant SARS-CoV-2 Diagnostic Test Results

We devised a model to interpret discordant SARS-CoV-2 test results. We estimate that, during March 2020–May 2022, a patient in the United States who received a positive rapid antigen test result followed by a negative nucleic acid test result had only a 15.4% (95% CI 0.6%–56.7%) chance of being infected.

59 BASIC BIOLOGICAL SCIENCES↗

Design, execution, and interpretation of plant RNA-seq analyses

Genomics has transformed our understanding of the genetic architecture of traits and the genetic variation present in plants. Here, we present a review of how RNA-seq can be performed to tackle research challenges addressed by plant sciences. We discuss the importance of experimental design in RNA-seq, including considerations for sampling and replication, to avoid pitfalls and wasted resources. Approaches for processing RNA-seq data include quality control and counting features, and we describe common approaches and variations. Though differential gene expression analysis is the most common analysis of RNA-seq data, we review multiple methods for assessing gene expression, including detecting allele-specific gene expression and building co-expression networks. With the production of more RNA-seq data, strategies for integrating these data into genetic mapping pipelines is of increased interest. Finally, special considerations for RNA-seq analysis and interpretation in plants are needed, due to the high genome complexity common across plants. By incorporating informed decisions throughout an RNA-seq experiment, we can increase the knowledge gained.

59 BASIC BIOLOGICAL SCIENCES↗

Deep learning models for interpretation of point of care ultrasound in military working dogs

Introduction: Military working dogs (MWDs) are essential for military operations in a wide range of missions. With this pivotal role, MWDs can become casualties requiring specialized veterinary care that may not always be available far forward on the battlefield. Some injuries such as pneumothorax, hemothorax, or abdominal hemorrhage can be diagnosed using point of care ultrasound (POCUS) such as the Global FAST® exam. This presents a unique opportunity for artificial intelligence (AI) to aid in the interpretation of ultrasound images. In this article, deep learning classification neural networks were developed for POCUS assessment in MWDs. Methods: Images were collected in five MWDs under general anesthesia or deep sedation for all scan points in the Global FAST® exam. For representative injuries, a cadaver model was used from which positive and negative injury images were captured. A total of 327 ultrasound clips were captured and split across scan points for training three different AI network architectures: MobileNetV2, DarkNet-19, and ShrapML. Gradient class activation mapping (GradCAM) overlays were generated for representative images to better explain AI predictions. Results: Performance of AI models reached over 82% accuracy for all scan points. The model with the highest performance was trained with the MobileNetV2 network for the cystocolic scan point achieving 99.8% accuracy. Across all trained networks the diaphragmatic hepatorenal scan point had the best overall performance. However, GradCAM overlays showed that the models with highest accuracy, like MobileNetV2, were not always identifying relevant features. Conversely, the GradCAM heatmaps for ShrapML show general agreement with regions most indicative of fluid accumulation. Discussion: Overall, the AI models developed can automate POCUS predictions in MWDs. Preliminarily, ShrapML had the strongest performance and prediction rate paired with accurately tracking fluid accumulation sites, making it the most suitable option for eventual real-time deployment with ultrasound systems. Further integration of this technology with imaging technologies will expand use of POCUS-based triage of MWDs.

59 BASIC BIOLOGICAL SCIENCES↗

Uncovering Structure–Conductivity Relationships in Anion Exchange Membranes (AEMs) Using Interpretable Machine Learning

Anion exchange membranes (AEMs) play a vital role in the performance of water electrolyzers and fuel cells, yet their discovery and optimization remain challenging due to the complexity of structure–property relationships. In this study, we introduce a machine learning framework that leverages conditional graph neural networks (cGNNs) and descriptor-based models and a hybrid graph neural network (HGARE) to predict and interpret ionic conductivity. The descriptor-based pipeline employs principal component analysis (PCA), ablation, and SHAP analysis to identify factors governing anion conductivity, revealing electronic, topological, and compositional descriptors as key contributors. Beyond prediction, dimensionality reduction and clustering are performed by employing t-SNE and KMeans as well as SOM, which reveal distinct membranes clusters, some of which were enriched with high anion conductivity. Among graph-based approaches, the graph convolutional (GCN) achieved strong predictive performance, while the Hybrid Graph Autoencoder-Regressor Ensemble (HGARE) achieved the highest accuracy. Additionally, atom-level saliency maps from GCN provide spatial explanations for conductive behavior, revealing the importance of polarizable and flexible regions. This work contributes to the accelerated and data-driven design of high-performance AEMs.

Naghshnejad, Pegah [Department of Chemical Enginee↗

The High-resolution Transmission Spectrum of HD 189733b Interpreted with Atmospheric Doppler Shifts from Three-dimensional General Circulation Models

The signature of wind patterns caused by the interplay of rotation and energy redistribution in hot Jupiters is detectable at high spectral resolution, yet no direct comparison has been attempted between predictions from general circulation models (GCMs) and observed high-resolution spectra. We present the first such comparison on near-infrared transmission spectra of the hot Jupiter HD 189733b. Exploring 12 rotation rates and two chemical regimes, we have created model spectra from 3D GCMs and cross-correlated them with the observed spectra. Comparing our models against those of HD 189733b, we obtain three key results: (1) we confirm CO and H{sub 2}O in the planet’s atmosphere at a detection significance of 8.2σ; (2) we recover the signature of day-to-night winds with speeds of several km s{sup −1} at pressures of several millibars; and (3) we constrain the rotation period of the planet to between 1.2 and 4.69 days (synchronous rotation (2.2 days) remains consistent with existing observations). Our results do not suffer from the shortcomings of 1D models as cross-correlation templates—these models mainly tend to overconstrain the slower rotation rates and show evidence for anomalous blueshifts. Our 3D models instead match the observed line-of-sight velocity of this planet by self-consistently including the effects of high-altitude day-to-night winds. Overall, we find a high degree of consistency between observations of HD 189733b and our GCM-based spectra, implying that the physics and chemistry are adequately described in current 3D forward models for the purpose of interpreting observations at high spectral resolution.

79 ASTRONOMY AND ASTROPHYSICS↗