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At least 595 records · Page 33

Compilation and utilization of a sorghum transcriptome compendium for gene regulatory network analysis and crop trait engineering

Sorghum bicolor (Sorghum) is a drought and heat tolerant C4 grass crop used to produce grain, forage, biofuels, and other bioproducts. Genetic improvement of sorghum hybrid crops is aided by a large and diverse germplasm, sorghum's diploid inbreeding genetics, and a relatively small genome that has facilitated genomic research. Over the past 20 years, the sorghum research community characterized the cytogenetic and recombinant landscapes of sorghum's 10 chromosomes, sequenced and annotated the sorghum genome, and used that information to identify genes/alleles that modulate flowering time, plant height, seed shattering, and other important traits. More recently, >1000 RNA-seq transcriptome profiles were collected from 15 sorghum genotypes to help understand the genetic basis of variation in growth and development of sorghum stems, tillers, roots, and leaves, and the regulation of biosynthetic pathways that produce epicuticular wax, dhurrin, and RFOs, compounds that contribute to sorghum's resilience. Transcriptome studies were designed to identify differentially expressed genes that are co-expressed during development or in response to a treatment to enable construction of gene regulatory networks. Co-expression and network analysis identified transcription factors and their cognate binding sites in target gene promoters and signaling pathways that modulate gene regulatory networks providing gene editing targets for further trait optimization. RNA-seq data from >20 experiments targeting sorghum organs, tissues, cell types, developmental stages, and responses to environmental conditions (i.e., diel, day-length, shading, water-deficit, temperature) has been compiled in a sorghum transcriptome compendium. The goal of this resource paper is to describe compendium content, accessibility, and a compendium data analysis pipeline and to illustrate the types of information that can be derived from the compendium with a focus on the elucidation of gene regulatory networks useful for guiding the improvement of sorghum traits through gene editing.

RNA-seq↗

An effective description of charge diffusion and energy transport in a charged plasma from holography

We discuss the physics of sound propagation and charge diffusion in a plasma with non-vanishing charge density. Our analysis culminates the program initiated in to construct an open effective field theory of low-lying modes of the stress tensor and charge current in such plasmas. We model the plasma holographically as a Reissner-Nordström-AdS d+1 black hole, and study linearized fluctuations of longitudinally polarized scalar gravitons and photons in this background. We demonstrate that the perturbations can be decoupled and repackaged into the dynamics of two designer scalars, whose gravitational coupling is modulated by a non-trivial dilatonic factor. The holographic analysis allows us to isolate the phonon mode from the charge diffusion mode, and identify the combination of currents that corresponds to each of them. We use these results to obtain the real-time Gaussian effective action, which includes both the retarded response and the associated stochastic (Hawking) fluctuations, accurate to quartic order in gradients.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

An aerodynamic analysis of the autogiro rotor with a comparison between calculated and experimental results

This report presents an extension of the autogiro theory of Glauert and Lock in which the influence of a pitch varying with the blade radius is evaluated and methods of approximating the effect of blade tip losses and the influence of reversed velocities on the retreating blades are developed. A comparison of calculated and experimental results showed that most of the rotor characteristics could be calculated with reasonable accuracy, and that the type of induced flow assumed has a secondary effect upon the net rotor forces, although the flapping motion is influenced appreciably. An approximate evaluation of the effect of parasite drag on the rotor blades established the importance of including this factor in the analysis.

Wheatley, John B↗

Plant GATA Factors: Their Biology, Phylogeny, and Phylogenomics

GATA factors are evolutionarily conserved transcription factors that are found in animals, fungi, and plants. Compared to that of animals, the size of the plant GATA family is increased. In angiosperms, four main GATA classes and seven structural subfamilies can be defined. In recent years, knowledge about the biological role and regulation of plant GATAs has substantially improved. Individual family members have been implicated in the regulation of photomorphogenic growth, chlorophyll biosynthesis, chloroplast development, photosynthesis, and stomata formation, as well as root, leaf, and flower development. In this review, we summarize the current knowledge of plant GATA factors. Using phylogenomic analysis, we trace the evolutionary origin of the GATA classes in the green lineage and examine their relationship to animal and fungal GATAs. Lastly, we speculate about a possible conservation of GATA-regulated functions across the animal, fungal, and plant kingdoms.

59 BASIC BIOLOGICAL SCIENCES↗

Preoperative Pazopanib in High-Risk Soft Tissue Sarcoma: Phase II Window-of Opportunity Study of the German Interdisciplinary Sarcoma Group (NOPASS/GISG-04)

Background: Preoperative devascularization might improve local control and thus the outcome of patients with soft tissue sarcoma (STS). The multikinase inhibitor pazopanib has antiangiogenic effects and is approved for treating metastatic STS. We conducted a trial of preoperative pazopanib therapy in high-risk STS. Methods: This single-arm, phase II trial included patients with resectable, non-metastatic, treatment-naïve, high-risk STS. Patients received pazopanib 800 mg daily while waiting for surgery (21-day ‘window of opportunity’). The primary endpoint was metabolic response rate (MRR; proportion of patients with ≥ 50% reduction of mean standardized uptake value [SUV{sub mean}] in post- vs. pretreatment fluorodeoxyglucose–positron emission tomography/computed tomography [FDG-PET-CT]). Planned sample size was 35 patients (type I error, 5%; type II error, 20%). A translational substudy explored associations between response and concentration of circulating angiogenic factors. Results: Futility analysis was performed after 21 patients (11 female, mean age 67 years; liposarcoma n = 15); 17/21 patients were evaluable for the primary endpoint. The MRR was 1/17 (5.9%, 95% confidence interval < 0.01–0.29). Mean change in SUV{sub mean} of post- versus pretreatment PET was a 6% decrease (range 65% decrease to 34% increase); 7/21 (33.3%) patients had 12 grade 3/4 toxicities, and 19/21 (95.2%) patients were resected (all R0). One (4.8%) patient suffered a grade 4 postoperative complication (anastomotic leakage). Circulating endothelial progenitor cells, soluble vascular endothelial growth factor, and angiopoietin-2 concentrations showed no relevant changes during treatment. Conclusions: Although this study showed that preoperative pazopanib is not effective for unselected high-risk STS patients, relevant treatment effects were observed in a single patient. Future research needs to better define subgroups potentially benefiting from preoperative pazopanib treatment. ClinicalTrials.gov identifier: NCT01543802.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

A study of autogiro rotor-blade oscillations in the plane of the rotor disk

An analysis of the factors governing the oscillation of an autogiro rotor blade in the plane of the rotor disk showed that the contribution of the air forces to the resultant motion was small and that the oscillation is essentially a direct effect of the rotor-blade flapping motion. A comparison of calculated oscillations with those measured in flight on three different rotors disclosed that the calculations gave satisfactory agreement with experiment. The calculated air forces on the rotor blade appear to be larger than the experimental ones, but this discrepancy can be attributed to the deficiencies in the strip analysis.

Wheatley, John B↗

In-Situ Resource Utilization for Space Exploration: Resource Processing, Mission-Enabling Technologies, and Lessons for Sustainability on Earth and Beyond

As humanity begins to reach out into the solar system, it has become apparent that supporting a human or robotic presence in transit and/or on station requires significant expendable resources including consumables (to support people), fuel, and convenient reliable power. Transporting all necessary expendables is inefficient, inconvenient, costly, and, in the final analysis, a complicating factor for mission planners and a significant source of potential failure modes. Over the past twenty-five years, beginning with the Space Exploration Initiative, researchers at the NASA Glenn Research Center (GRC), academic collaborators, and industrial partners have analyzed, researched, and developed successful solutions for the challenges posed by surviving and even thriving in the resource limited environment(s) presented by near-Earth space and non-terrestrial surface operations. In this retrospective paper, we highlight the efforts of the co-authors in resource simulation and utilization, materials processing and consumable(s) production, power systems and analysis, fuel storage and handling, propulsion systems, and mission operations. As we move forward in our quest to explore space using a resource-optimized approach, it is worthwhile to consider lessons learned relative to efficient utilization of the (comparatively) abundant natural resources and improving the sustainability (and environment) for life on Earth. We reconsider Lunar (and briefly Martian) resource utilization for potential colonization, and discuss next steps moving away from Earth.

Hepp, A. F.↗

In-Situ Resource Utilization for Space Exploration: Resource Processing, Mission-Enabling Technologies, and Lessons for Sustainability on Earth and Beyond

As humanity begins to reach out into the solar system, it has become apparent that supporting a human or robotic presence in transit andor on station requires significant expendable resources including consumables (to support people), fuel, and convenient reliable power. Transporting all necessary expendables is inefficient, inconvenient, costly, and, in the final analysis, a complicating factor for mission planners and a significant source of potential failure modes. Over the past twenty-five years, beginning with the Space Exploration Initiative, researchers at the NASA Glenn Research Center (GRC), academic collaborators, and industrial partners have analyzed, researched, and developed successful solutions for the challenges posed by surviving and even thriving in the resource limited environment(s) presented by near-Earth space and non-terrestrial surface operations. In this retrospective paper, we highlight the efforts of the co-authors in resource simulation and utilization, materials processing and consumable(s) production, power systems and analysis, fuel storage and handling, propulsion systems, and mission operations. As we move forward in our quest to explore space using a resource-optimized approach, it is worthwhile to consider lessons learned relative to efficient utilization of the (comparatively) abundant natural resources and improving the sustainability (and environment) for life on Earth. We reconsider Lunar (and briefly Martian) resource utilization for potential colonization, and discuss next steps moving away from Earth.

Specific impulse↗

The Zintl Concept Applied to Intergrowth Structures: Electron‐Hole Matching, Stacking Preferences, and Chemical Pressures in Pd 5 InAs

Abstract Enumerating the potential stacking sequences of layers is a fundamental way to account for the structure diversity of solid state compounds. In many cases, these stacking variations represent polymorphs with only small energetic differences. Here, we examine a compound for which the preferred stacking pattern instead reveals key aspects about its chemical bonding: Pd 5 InAs. Its structure is based on the intergrowth of slabs of the AuCu 3 and PtHg 2 (or alternatively, fluorite) structure types. Two basic stacking arrangements are available to this compound, represented by the Pd 5 TlAs and HoCoGa 5 structure types. DFT total energy calculations reveal that the former outcompetes the latter by a staggering 0.65 eV/formula unit. Through a combination of DFT‐reversed approximation Molecular Orbital (DFT‐raMO) and DFT‐Chemical Pressure (DFT‐CP) analysis we trace this preference to two factors. First, with DFT‐raMO analysis, we derive a Zintl‐like bonding scheme of Pd 5 InAs. This scheme, along with the inspection of selected crystal orbitals, is then connected to preferred stacking through the coordination environments of the Pd atoms at the interface between the Pd−In and Pd−As layers. In the hypothetical HoCoGa 5 ‐type and observed Pd 5 InAs‐type structures, different Pd coordination environments arise at the interfaces. The hypothetical structure features square planar PdIn 2 As 2 units, in each of which the same 4d‐orbital serves in the Pd sublattice's role as both Lewis acid (for interactions with the As) and Lewis base (for interactions with the In). In the observed structure, tetrahedral PdIn 2 As 2 units occur instead, so that these contradictory roles are distributed to separate 4d‐orbitals, leading to more effective bonding. DFT‐CP analysis illustrates that this driving force for the Pd 5 TlAs‐type arrangement is supplemented by a favorable alignment of the packing tensions in the parent structures. Altogether, the resulting picture demonstrates how the reaction of simple intermetallic structures to form intergrowths can be guided by recognizable chemical interactions.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Perturbative calculations of gravitational form factors at large momentum transfer

We perform a perturbative QCD analysis of the gravitational form factors (GFFs) of nucleon at large momentum transfer. We derive the explicit factorization formula of the GFFs in terms of twist-3 and twist-4 light-cone distribution amplitudes of nucleon. Power behaviors for these GFFs are obtained from the leading order calculations. Numeric results of the quark and gluon contributions to various GFFs are presented with model assumptions for the distribution amplitudes in the literature. We also present the perturbative calculations of the scalar form factor $\langle P$' $|F^2|P \rangle$ for pion and proton at large momentum transfer.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Studies on Thorium Adsorption Characteristics upon Activated Titanium Hydroxide Prepared from Rosetta Ilmenite Concentrate

The titanium hydroxide prepared from Rosetta ilmenite concentrate has been applied for Th (IV) adsorption from its acid aqueous solutions. The prepared hydroxide is first characterized by both Fourier transform infrared (FT-IR) spectrum and thermogravimetric analysis. The relevant factors affecting the adsorption process have been studied. The obtained equilibrium data fits well with the Langmuir isotherm rather than Freundlich isotherm, while the adsorption kinetic data follow the pseudo-second order model. The different thermodynamic parameters have also been calculated and indicate that the adsorption process is spontaneous.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Shear joint capability versus bolt clearance

The results of a conservative analysis approach into the determination of shear joint strength capability for typical space-flight hardware as a function of the bolt-hole clearance specified in the design are presented. These joints are comprised of high-strength steel fasteners and abutments constructed of aluminum alloys familiar to the aerospace industry. A general analytical expression was first arrived at which relates bolt-hole clearance to the bolt shear load required to place all joint fasteners into a shear transferring position. Extension of this work allowed the analytical development of joint load capability as a function of the number of fasteners, shear strength of the bolt, bolt-hole clearance, and the desired factor of safety. Analysis results clearly indicate that a typical space-flight hardware joint can withstand significant loading when less than ideal bolt hole clearances are used in the design.

Lee, H. M.↗

Observation, Analysis, and Recommendations for ND Management Reviews (W88-0/Mk5 ALT 370 Program Report)

Progress and status reviews allow teams to provide updates and targeted information designed to inform the customer of progress and to help the customer understand current risks and challenges. Both presenters and the customer should have well-calibrated expectations for the level of content and information. However, what needs to be covered in systems-level management reviews can too often be poorly defined. These unclear expectations can lead teams to overpreparing or attempting to guess what information the customer considers as most critical. This aspect of the review process is stressful, disruptive, and bad for morale – and time spent overpreparing reports is time spent not focusing on the technical work necessary to stay on schedule. To define and address these issues, this report was designed to observe various aspects of development program coordination and review activities for NNSA and Navy customers, and then to conduct unbiased, independent Human Factors observation and analysis from an outside perspective. The report concludes with suggestions and recommendations for improving the efficiency of information flow related to reviews, with the goals of increasing productivity and benefitting both Sandia and the customer.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Association of female reproductive and hormonal factors with gallbladder cancer risk in Asia: A pooled analysis of the Asia Cohort Consortium

Abstract The female predominance of gallbladder cancer (GBC) has led to a hypothesis regarding the hormone‐related aetiology of GBC. We aimed to investigate the association between female reproductive factors and GBC risk, considering birth cohorts of Asian women. We conducted a pooled analysis of 331,323 women from 12 cohorts across 4 countries (China, Japan, Korea, and Singapore) in the Asia Cohort Consortium. Cox proportional hazard models were used to estimate the hazard ratios (HRs) and corresponding 95% confidence intervals (CIs) to assess the association between reproductive factors (age at menarche, parity, age at first delivery, breastfeeding, and age at menopause) and GBC risk. We observed that a later age at menarche was associated with an increased risk of GBC (HR 1.4, 95% CI 1.16–1.70 for 17 years and older vs. 13–14 years), especially among the cohort born in 1940 and later (HR 2.5, 95% CI 1.50–4.35). Among the cohort born before 1940, women with a later age at first delivery showed an increased risk of GBC (HR 1.56, 95% CI 1.08–2.24 for 31 years of age and older vs. 20 years of age and younger). Other reproductive factors did not show a clear association with GBC risk. Later ages at menarche and at first delivery were associated with a higher risk of GBC, and these associations varied by birth cohort.

Shin, Aesun↗

Study of spread spectrum multiple access systems for satellite communications with overlay on current services

The feasibility of using spread spectrum techniques to provide a low-cost multiple access system for a very large number of low data terminals was investigated. Two applications of spread spectrum technology to very small aperture terminal (VSAT) satellite communication networks are presented. Two spread spectrum multiple access systems which use a form of noncoherent M-ary FSK (MFSK) as the primary modulation are described and the throughput analyzed. The analysis considers such factors as satellite power constraints and adjacent satellite interference. Also considered is the effect of on-board processing on the multiple access efficiency and the feasibility of overlaying low data rate spread spectrum signals on existing satellite traffic as a form of frequency reuse is investigated. The use of chirp is examined for spread spectrum communications. In a chirp communication system, each data bit is converted into one or more up or down sweeps of frequency, which spread the RF energy across a broad range of frequencies. Several different forms of chirp communication systems are considered, and a multiple-chirp coded system is proposed for overlay service. The mutual interference problem is examined in detail and a performance analysis undertaken for the case of a chirp data channel overlaid on a video channel.

Ha, Tri T.↗

Thermal and Structural Analysis of Beamline Components in the Mu2e Experiment

Fermi National Accelerator Laboratory will be conducting the high energy particle physics experiment Muons to Electrons (Mu2e). In this experiment, physicists will attempt to witness and understand an ultra-rare process which is the conversion of a muon into the lighter mass electron, without creating additional neutrinos. The experiment is conducted by first generating a proton beam which will be collided into a target within the production solenoid (PS). This creates a high-intensity muon beam which passes through a transport solenoid (TS) and into the detector solenoid (DS). In the detector solenoid the muons will be stopped in an aluminum target and a series of detectors will measure the electrons produced. These components have been named the DS train since they are coupled and travel on a rail system when being inserted or extracted from the DS. To facilitate the installation and removal of the DS train, a set of external stands and a support stand for the instrumentation feed-through bulkhead (IFB) have been designed. Full analysis of safety factors and performance of these two designs has been completed. The detector solenoid itself will need to be maintained to a temperature of 22°C ± 10°C. This will minimize thermal strain and ensure the accurate position of the components is maintained to the tolerance of 2 mm. To reduce the thermal gradient, a passive heating system has been developed and reported.

43 PARTICLE ACCELERATORS↗

Integrated emergency control board including design extended conditions for Krsko NPP - 297

In the aim of implementing post-Fukushima safety measures, Krsko Nuclear Power Plant is developing a Safety Upgrade Program. Krsko NPP is upgrading the remote shutdown capabilities and implementing ways to prevent and mitigate the consequences of potential Severe Accidents. This modification enhances remote shutdown capabilities of the plant to prevent potential severe accidents and improve the ways to mitigate their consequences. Within the set of plant design modifications, addressed the design, construction, and commissioning, of a new Emergency Control Room (EMCB. Tecnatom is the responsible of the design modification of the plant together with Idom, that participates with Tecnatom in the project as a joint venture, who provides a new set of field instrumentation, including its design and the corresponding wiring. EMCB integrates Human- System Interface throughout centralizing capabilities to safety shutdown and cooldown the plant as well as to control the new Design Extension Systems. The process relies on a Human Factors Engineering (HFE) analysis applying a specific methodology based on NUREG-0711 . Tecnatom has developed a specific HFE Program Management Plan to proceed with the analysis in a documented, traceable and reliable way. HFE activities ends with an Integrated System Validation in the actual full scope simulator involving MCR crews. This paper describes different phases of the project, the integrated schedule between HFE and I and C activities, benefits of upgrading main and emergency control rooms beyond design bases and addresses Tecnatom lessons learned obtained during the project execution. (authors)

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Sources of price dispersion in U.S. residential solar installations

Prices of solar PV have dropped dramatically, by half in just the past 6 years. But looking simply at prices paid today, there is considerable heterogeneity. For systems installed in 2014, the 10-90 percentile range for the observed $/W spans nearly a factor of 2. This apparent price dispersion raises policy relevant questions, such as: why are consumers paying more than they need to? And would better-informed consumers increase the social benefits of solar PV? This paper analyzes price dispersion in U.S. residential PV installations between 2008 and 2014. Focusing on the most commonly used metric in previous studies of price dispersion, we use the quarterly coefficient of variation (CV) as our measure of price dispersion. We find higher levels of price dispersion in our data (0.22) than the average of 55 previous studies we reviewed (0.16). We also find that price dispersion has been persistent; it has remained above 0.15 since 2000 with no trend over that period. If anything, price dispersion has been increasing recently during the period for which we have complete data, 2008-14. Econometric analysis of the factors affecting price dispersion supports theories from the economic literature focusing on access to information and the costs and benefits of consumer search. Factors that increase the consumer payoffs of investing time in searching for information—system size and the value of solar— are associated with lower levels of price dispersion. Factors that reduce the costs of search—neighbors who have recently installed solar and having third-party quotes available—are also associated with less price dispersion. These results provide support for the importance of public efforts to enhance access to price information, e.g. by supporting private sector price quote providers. The results also point to the particular need for information in nascent markets for PV in which access to the experience of neighbors is not available.

14 SOLAR ENERGY↗