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At least 595 records · Page 33

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DOE OSTI2016

TU-H-CAMPUS-TeP2-04: Measurement of Stereotactic Output Factors with DNA Double-Strand Breaks

Purpose: Radiotherapy treatment is specified by radiation dose prescriptions, but biological DNA damage actually controls treatment effectiveness. It is impractical to directly measure dose in the clinic, so we measure quantities, such as collected charge, and calculate the relationship to dose. At small fields, such as those in stereotactic radiosurgery (SRS), charged-particle equilibrium (CPE) breaks down and the accuracy of the measurement for delivered dose decreases. By measuring DNA double-strand breaks (DSB) directly, we believe treatment accuracy could improve by providing a more meaningful measurement. Methods: A DNA dosimeter, consisting of magnetic streptavidin beads attached to 4 kilobase pair DNA strands labeled with biotin and fluorescein amidite (FAM) on opposing ends, was suspended in phosphate-buffered saline (PBS). Twenty µL samples were placed in plastic micro-capillary tubes inside a water tank setup and irradiated with 10 cm, 3 cm, 1.25 cm, 0.75 cm, and 0.5 cm radiation field sizes, where the three smallest sizes were cones. After irradiation, the dosimeters were mechanically separated into beads (intact DNA) and supernatant (broken DNA/FAM) using a magnet. The fluorescence was read and the probability of DSB was calculated. This was used to calculate the output factor for an SRS beam and compared to that measured using a diode detector. Results: The output factors relative to a 10 cm field were 0.89±0.07, 0.76±0.08, 0.59±0.04, and 0.78±0.12 for the field sizes of 3 cm, 1.25 cm, 0.75 cm, and 0.5 cm, respectively. Some of the diode measurements do not fall within these uncertainties. Conclusion: This was the first attempt to measure output factors in a water tank with the DNA dosimeter. Although differences compared to the diode were observed, the uncertainty analysis ignored systematic errors. For future work, we will repeat this experiment to quantify and correct systematic errors, such as those caused by positional alignment and sample contamination. This work was funded in part by CPRIT (RP140105).

60 APPLIED LIFE SCIENCES↗

DOE OSTI2011

Methods for data classification

The present invention provides methods for classifying data and uncovering and correcting annotation errors. In particular, the present invention provides a self-organizing, self-correcting algorithm for use in classifying data. Additionally, the present invention provides a method for classifying biological taxa.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

DOE OSTI2026

Superconducting Material Growth for Radio-Frequency (RF) Cavities

Superconducting radio-frequency (SRF) cavities, usually manufactured from Niobium (Nb), are vital components of modern particle accelerators because of their ability to achieve high acceleration gradients with little power dissipation. Naturally forming Nb surface oxides significantly alter cavity performance by changing surface resistance. A nondestructive characterization of oxide thickness is helpful for relating surface processing treatments to cavity performance. This work develops a protocol to measure Nb oxide thickness using Angle-Resolved X-ray Photoelectron Spectroscopy (ARXPS) while correcting instrumental errors. Using uniform bulk standard samples (Silver, Aluminum oxide, and Germanium), we determined a baseline correction factor to account for analyzer-related intensity evolution as the measurement angle increases. The correction factor was then applied to Nb 3d ARXPS data. Applying the Strohmeier equation to the corrected data yielded a Nb2O5 thickness of 6.04 nm, closely matching the 5.5 (±.05) nm value obtained from cross-sectional transmission electron microscopy. Our approach will bring a method to incorporate inherent errors in the thickness measurements using ARXPS and can be broadly applied to improve the accuracy of thickness measurements in a wide range of heterostructures.

Lambert, Nathan [Fermilab]↗

DOE OSTI2026

Superconducting Material Growth for Radio-Frequency (RF) Cavities

Lambert, Nathan [Fermilab]↗

DOE OSTI2020

The many-body expansion for aqueous systems revisited: 1. Water-water interactions

We revisit the Many-Body Expansion (MBE) for water-water interactions by examining the effects of the basis set, including those resulting from the Basis Set Superposition Error (BSSE) correction, on the various terms for selected sizes of water clusters up to n = 21. The analysis is performed at the second order Møller-Plesset (MP2) perturbation theory with the family of augmented correlation consistent basis sets up to five zeta quality for the (H2O)n, n = 7, 10, 13, 16 and 21 clusters, for which we report either the complete MBE (n = 7, 10) or the one through the 6-body (n = 13) and the 5-body terms (n = 16, 21). Our results suggest that any sizeable contributions to the total cluster binding energy arising from the 5-body and larger terms are solely an artifact of the size of the basis set. Indeed, all terms above the 4-body converge monotonically to practically zero at the Complete Basis Set (CBS) limit. The magnitudes of the 5-body and above terms are accurately reproduced even with the smaller basis set of the series (aug-cc-pVDZ) once the BSSE correction is taken into account. The same level of theory (MP2/aug-cc-pVDZ, BSSEcorrected) also accurately reproduces the MP2/CBS values of the 3- and 4-body terms. The contribution of electron correlation to the 3- and 4-body terms is quite small, so that neglecting the correlation contribution in all terms above the 3-body results in an error of ??(0.1%). The BSSE correction to the largest 2-body term in the MBE was accurately estimated from the function ?? [1 + erf(-?? ??)], which is proportional to the common (overlapping) area between two Gaussian distributions whose centers are separated by R, with the constants ??, ?? fitted to the calculated BSSE corrections for the individual 2-body terms of the clusters with each basis set. Our results unquestionably demonstrate that the MBE for water-water interactions converges to the 4-body term, since any finite terms above the 4-body are artifacts of the size of the basis set and can be safely truncated at the 4-body term when either a very large basis set is used or BSSE corrections are taken into account even with the aug-cc-pVDZ basis set. We expect these findings to have important consequences in the pursuit of accurate many-body molecular dynamics simulations for aqueous systems.

Heindel, Joseph↗

DOE OSTI2021

Erratum: “On virial analysis at low aspect ratio” [Phys. Plasmas 23, 072508 (2016)]

This article corrects an error in M.W. Bongard et al., 'On Virial Analysis at Low Aspect Ratio,' Phys. Plasmas 23, 072508 (2016) pertaining to a typographical error in its equation 21. Furthermore, all numerical calculations reported in this paper utilized the correct formulation described here. Accordingly, no changes to the conclusions of the original article are required.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2016

SU-F-T-281: Monte Carlo Investigation of Sources of Dosimetric Discrepancies with 2D Arrays

Purpose: Intensity modulated radiation therapy (IMRT) poses a number of challenges for properly measuring commissioning data and quality assurance (QA). Understanding the limitations and use of dosimeters to measure these dose distributions is critical to safe IMRT implementation. In this work, we used Monte Carlo simulations to investigate the possible sources of discrepancy between our measurement with 2D array system and our dose calculation using our treatment planning system (TPS). Material and Methods: MCBEAM and MCSIM Monte Carlo codes were used for treatment head simulation and phantom dose calculation. Accurate modeling of a 6MV beam from Varian trilogy machine was verified by comparing simulated and measured percentage depth doses and profiles. Dose distribution inside the 2D array was calculated using Monte Carlo simulations and our TPS. Then Cross profiles for different field sizes were compared with actual measurements for zero and 90° gantry angle setup. Through the analysis and comparison, we tried to determine the differences and quantify a possible angular calibration factor. Results: Minimum discrepancies was seen in the comparison between the simulated and the measured profiles for the zero gantry angles at all studied field sizes (4×4cm{sup 2}, 10×10cm{sup 2}, 15×15cm{sup 2}, and 20×20cm{sup 2}). Discrepancies between our measurements and calculations increased dramatically for the cross beam profiles at the 90° gantry angle. This could ascribe mainly to the different attenuation caused by the layer of electronics at the base behind the ion chambers in the 2D array. The degree of attenuation will vary depending on the angle of beam incidence. Correction factors were implemented to correct the errors. Conclusion: Monte Carlo modeling of the 2D arrays and the derivation of angular dependence correction factors will allow for improved accuracy of the device for IMRT QA.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2015

Correction to the paper “a simple model to determine the interrelation between the integral characteristics of hall thrusters” [Plasma Physics Reports 40, 229 (2014)]

The paper is devoted to comparison of experimental data with theoretical predictions concerning the dependence of the current of accelerated ions on the operating voltage of a Hall thruster with an anode layer. The error made in the paper published by the authors in Plasma Phys. Rep. 40, 229 (2014) occurred because of a misprint in the Encyclopedia of Low-Temperature Plasma. In the present paper, this error is corrected. It is shown that the simple model proposed in the above-mentioned paper is in qualitative and quantitative agreement with experimental results.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2015

Analyzing the effectiveness of a frame-level redundancy scrubbing technique for SRAM-based FPGAs

Radiation effects such as soft errors are the major threat to the reliability of SRAM-based FPGAs. This work analyzes the effectiveness in correcting soft errors of a novel scrubbing technique using internal frame redundancy called Frame-level Redundancy Scrubbing (FLR-scrubbing). This correction technique can be implemented in a coarse grain TMR design. The FLR-scrubbing technique was implemented on a mid-size Xilinx Virtex-5 FPGA device used as a case study. The FLR-scrubbing technique was tested under neutron radiation and fault injection. Implementation results demonstrated minimum area and energy consumption overhead when compared to other techniques. The time to repair the fault is also improved by using the Internal Configuration Access Port (ICAP). Lastly, neutron radiation test results demonstrated that the proposed technique is suitable for correcting accumulated SEUs and MBUs.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2012

DISSECTING THE STELLAR-MASS-SFR CORRELATION IN z = 1 STAR-FORMING DISK GALAXIES

Using a mass-limited sample of 24 {mu}m detected, star-forming galaxies at 0.5 < z < 1.3, we study the mass-star formation rate (SFR) correlation and its tightness. The correlation is well defined ({sigma} = 0.28 dex) for disk galaxies (n{sub Sersic} < 1.5), while more bulge-dominated objects often have lower specific SFRs (sSFRs). For disk galaxies, a much tighter correlation ({sigma} = 0.19 dex) is obtained if the rest-frame H-band luminosity is used instead of stellar mass derived from multi-color photometry. The sSFR correlates strongly with rest-frame optical colors (hence luminosity-weighted stellar age) and also with clumpiness (which likely reflects the molecular gas fraction). This implies that most of the observed scatter is real, despite its low level, and not dominated by random measurement errors. After correcting for these differential effects a remarkably small dispersion remains ({sigma} = 0.14 dex), suggesting that measurement errors in mass or SFR are {approx}< 0.10 dex, excluding systematic uncertainties. Measurement errors in stellar masses, the thickening of the correlation due to real sSFR variations, and varying completeness with stellar mass, can spuriously bias the derived slope to lower values due to the finite range over which observables (mass and SFR) are available. When accounting for these effects, the intrinsic slope for the main sequence for disk galaxies gets closer to unity.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2020

FPDetect: Efficient Reasoning About Stencil Programs Using Selective Direct Evaluation

We present FPDetect, a low-overhead approach for detecting logical errors and soft errors affecting stencil computations without generating false positives. We develop an offline analysis that tightly estimates the number of floating-point bits preserved across stencil applications. This estimate rigorously bounds the values expected in the data space of the computation. Violations of this bound can be attributed with certainty to errors. FPDetect helps synthesize error detectors customized for user-specified levels of accuracy and coverage. FPDetect also enables overhead reduction techniques based on deploying these detectors coarsely in space and time. Experimental evaluations demonstrate the practicality of our approach.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2022

An efficient decoder for a linear distance quantum LDPC code

Recent developments have shown the existence of quantum low-density parity check (qLDPC) codes with constant rate and linear distance. A natural question concerns the efficient decodability of these codes. In this paper, we present a linear time decoder for the recent quantum Tanner codes construction of asymptotically good qLDPC codes, which can correct all errors of weight up to a constant fraction of the blocklength. Our decoder is an iterative algorithm which searches for corrections within constant-sized regions. At each step, the corrections are found by reducing a locally defined and efficiently computable cost function which serves as a proxy for the weight of the remaining error.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2024

Multi-Fidelity Scheme for Accelerating 4D Finite Element Analysis for Mircoreactors

Next-generation microreactors are currently being designed to be operated terrestrial and extraterrestrial for remote surface power production. These systems will provide an alternative source of carbon-free energy that is versatile and can be utilized for various applications. These applications of microreactors have prompted the usage of high-fidelity unstructured finite element (FE) based approaches to provide time-dependent solutions for multiple physics fields. Computing these high-fidelity (4-D) solutions for multiple design iterations, physics fields, and transient events requires an immense computational cost. These high-fidelity solutions are computational expensive and the cost can be reduced through the implementation of less accurate low-fidelity solutions. Unlike the current fleet of commercial nuclear reactors, these next-gen systems present challenges due to the material and physical limitations required. Due to these constraints, the brute force technique of parameterizing important system characteristics determines whether a design meets the project objective. A system such as a nuclear reactor could have thousands of design parameters that affect system performance. In order to analyze the entire parameter space of such a complex system would require millions of CPU hours and countless design iterations. This costly approach is not practical due to regulatory and budget limitations. In this proposal, an approach that utilizes hybrid high-fidelity and low-fidelity FE models to reduce the computational cost of evaluating these applications in 4-D will be presented. The accuracy of the high-fidelity model and the computational efficiency of the low-fidelity model are taken advantage of to produce a solution that closely resembles the full order high-fidelity solution. By utilizing an unconverged coarse FE mesh, operation limits such as temperature, structural loading, etc., can be evaluated in an accelerated fashion and then can be spatially interpolated onto a finer mesh. The resulting error arising from the coarse mesh can be mitigated with a discrepancy function that actively quantifies and corrects the error in the coarse solution. This discrepancy function can be periodically updated with high-fidelity calculations across the temporal domain thus requiring less iterations on the fine mesh. As a result, the computational cost can be reduced for the evaluation and design iteration of microreactors. The proposal for this research contains three sections: Section 2 provides a literature review, Section 3 outlines the methodology for the proposed multi-fidelity scheme, and Section 4 displays preliminary results of the proposed research.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

DOE OSTI2022

Active readout-error mitigation

Mitigating errors is a significant challenge for near-term quantum computers. One of the most important sources of errors is related to the readout of the quantum state into a classical bit stream. A variety of techniques have been proposed to mitigate these errors with post-hoc corrections. Here, we propose a complementary scheme to actively reduce readout errors on a shot-by-shot basis by encoding single qubits, immediately prior to readout, into multiqubit states. The computational resources of our technique are independent of the circuit depth and are compatible with the error rates and connectivity of many current devices. We analyze the potential of our approach using two types of error-correcting codes, and, as a proof of principle, we demonstrate an 80% improvement in readout error on the IBMQ Mumbai quantum computer.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2018

Reply to “Comment on ‘Comparative study of ab initio nonradiative recombination rate calculations under different formalisms’ ”

As pointed out by the comments of Wickramaratne et al., there was indeed an algebra error in our original publication [Phys. Rev. B 91, 205315 (2015)] in calculating the 1D model. We have corrected this error, and did a renewed calculation and comparison of the 1D model and other approximated models. The revised comparison provides some insights for the origin of the difference between the full phonon spectrum electron-phonon coupling static formula results and other approximated results, especially for how to evaluate the amplitude of electron-phonon coupling.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

DOE OSTI2014

On the estimation of gravitational wave spectrum from cosmic domain walls

We revisit the production of gravitational waves from unstable domain walls analyzing their spectrum by the use of field theoretic lattice simulations with grid size 1024{sup 3}, which is larger than the previous study. We have recognized that there exists an error in the code used in the previous study, and the correction of the error leads to the suppression of the spectrum of gravitational waves at high frequencies. The peak of the spectrum is located at the scale corresponding to the Hubble radius at the time of the decay of domain walls, and its amplitude is consistent with the naive estimation based on the quadrupole formula. Using the numerical results, the magnitude and the peak frequency of gravitational waves at the present time are estimated. It is shown that for some choices of parameters the signal of gravitational waves is strong enough to be probed in the future gravitational wave experiments.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2020

Automated label flows for excited states of correlation functions in lattice gauge theory

Extracting excited states from lattice gauge theory correlation functions can be achieved through $χ^2$ minimization fits or algebraic approaches such as the variational method and Prony's method. Performing any kind of error analysis often leads to overlapping confidence regions of model parameters, even when the spectrum is not particularly dense. To correctly estimate errors, one must beware of mislabeling the states. In this work, we provide an algorithm that we call automated label flows which consistently and systematically identifies a deterministic labeling of states. This is a black-box approach in the sense that it gives a sensible set of labels without user guidance. Further, as an example, we pair one black box method with another, analyzing a lattice correlation function from real data using automated label flows in the context of Prony's method.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2013

Feasibility study of real-time planning for stereotactic radiosurgery

Purpose: 3D rotational setup errors in radiotherapy are often ignored by most clinics due to inability to correct or simulate them accurately and efficiently. There are two types of rotation-related problems in a clinical setting. One is to assess the affected dose distribution in real-time if correction is not applied and the other one is to correct the rotational setup errors prior to the initiation of the treatment. Here, the authors present the analytical solutions to both problems. Methods: (1) To assess the real-time dose distribution, eight stereotactic radiosurgery (SRS) cases were used as examples. For each plan, two new sets of beams with different table, gantry, and collimator angles were given in analytical forms as a function of patient rotational errors. The new beams simulate the rotational effects of the patient during the treatment setup. By using one arbitrary set of beams, SRS plans were recomputed with a series of different combinations of patient rotational errors, ranging from (-5 Degree-Sign , -5 Degree-Sign , -5 Degree-Sign ) to (5 Degree-Sign , 5 Degree-Sign , 5 Degree-Sign ) (roll, pitch, and yaw) with an increment of 1 Degree-Sign and compared with those without rotational errors. For each set of rotational errors, its corresponding equivalent beams were computed using the analytical solutions and then used for dose calculation. (2) To correct for the rotational errors, two new sets of table, gantry, and collimator angles were derived analytically to validate the previously published derivation. However, in the derivation, a novel methodology was developed and two sets of table, gantry, and collimator angles were obtained in analytical forms. The solutions provide an alternative approach to rotational error correction by rotating the couch, gantry, and collimator rather than the patient. Results: For demonstration purpose, the above-derived new beams were implemented in a treatment planning system (TPS) to study the rotational effects on the SRS cases. For each case, the authors have generated ten additional plans that accounted for different rotations of the patient. They have found that rotations have an insignificant effect on the minimal, maximum, mean doses, and V{sub 80%} of the planning target volume (PTV) when the rotations were relatively small. This was particularly true for the small and near-spherical targets. They, however, did change V{sub 95%} significantly when the rotations approached 5 Degree-Sign . The theory has been validated with clinical SRS cases and proven to be practical and viable. The preliminary results demonstrate that the rotational effects are patient-specific and depend on several important factors, such as the PTV size, the PTV location, and the beam configuration. The solutions given in this paper are of great potential values in clinical applications. Conclusions: They have derived the analytical solutions to a new set of table, gantry, and collimator angles for a given treatment beam configuration as a function of patient rotational errors. One solution was used to assess the dosimetric effects of an imperfect patient setup and the other one was used to correct for the setup errors without rotating the patient. Compared to the widely adopted method of rotation effect assessment by importing the rotational CT images into TPS, the equivalent beam approach is simple and accurate. The analytical solutions to correcting for rotational setup errors prior to treatment were also derived. Based on the initial clinical investigations, they firmly believe that clinically viable real-time treatment planning and adaptive radiation therapy are feasible with this novel method.

60 APPLIED LIFE SCIENCES↗