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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 595 records · Page 33
All sourcesNASA NTRSDOE OSTI
DOE OSTI2022

Disrupting the ArcA Regulatory Network Amplifies the Fitness Cost of Tetracycline Resistance in Escherichia coli

There is an urgent need for strategies to discover secondary drugs to prevent or disrupt antimicrobial resistance (AMR), which is causing >700,000 deaths annually. Here, we demonstrate that tetracycline-resistant (Tet R ) Escherichia coli undergoes global transcriptional and metabolic remodeling, including downregulation of tricarboxylic acid cycle and disruption of redox homeostasis, to support consumption of the proton motive force for tetracycline efflux. Using a pooled genome-wide library of single-gene deletion strains, at least 308 genes, including four transcriptional regulators identified by our network analysis, were confirmed as essential for restoring the fitness of Tet R E. coli during treatment with tetracycline. Targeted knockout of ArcA, identified by network analysis as a master regulator of this new compensatory physiological state, significantly compromised fitness of Tet R E. coli during tetracycline treatment. A drug, sertraline, which generated a similar metabolome profile as the arcA knockout strain, also resensitized Tet R E. coli to tetracycline. We discovered that the potentiating effect of sertraline was eliminated upon knocking out arcA, demonstrating that the mechanism of potential synergy was through action of sertraline on the tetracycline-induced ArcA network in the Tet R strain. Our findings demonstrate that therapies that target mechanistic drivers of compensatory physiological states could resensitize AMR pathogens to lost antibiotics.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Efficacy of using a dynamic length representation vs. a fixed-length for neuroarchitecture search

Deep learning neuroarchitecture and hyperparameter search are important in finding the best configuration that maximizes learned model accuracy. However, the number of types of layers, their associated hyperparameters, and the myriad of ways to connect layers poses a significant computational challenge in discovering ideal model configurations. Here, we assess two different approaches for neuroarchitecture search for a LeNet style neural network, one that uses a fixed-length approach where there is a preset number of possible layers that can be toggled on or off via mutation, and a variable-length approach where layers can be freely added or removed via special mutation operators. We found that the variable-length implementation trained better models while discovering unusual layer configurations worth further exploration.

Coletti, Mark↗
DOE OSTI2020

Dynamic Construction, Perception, and Remodeling of Plant Cell Walls

Plant cell walls are dynamic structures that are synthesized by plants to provide durable coverings for the delicate cells they encase. They are made of polysaccharides, proteins, and other biomolecules and have evolved to withstand large amounts of physical force and to resist external attack by herbivores and pathogens but can in many cases expand, contract, and undergo controlled degradation and reconstruction to facilitate developmental transitions and regulate plant physiology and reproduction. Recent advances in genetics, microscopy, biochemistry, structural biology, and physical characterization methods have revealed a diverse set of mechanisms by which plant cells dynamically monitor and regulate the composition and architecture of their cell walls, but much remains to be discovered about how the nanoscale assembly of these remarkable structures underpins the majestic forms and vital ecological functions achieved by plants.

biofuels (including algae and biomass), bio-inspir↗
DOE OSTI2022

In-Operando XRD Study of the Effects of Water Vapor on Phase Formation in LSM/YSZ SOFC Cathodes

Here, in-operando XRD was conducted on anode supported SOFC button cells with LSM-YSZ cathodes operated at varying cathode air compositions under constant current conditions for over 1000 h. 1-hour XRD scans were continuously collected throughout the entire operation duration. By taking the sum of measured intensities from all of the collected patterns, the resulting cumulative XRD count times allowed the identification of minor phases present at concentrations as low as <0.1 wt%. In dry air with no contaminants, the cathode exhibited improving power output during the first couple of hundred hours, followed by stable operation. The effect of 3% H 2 O + 12% CO 2 on the LSM-YSZ cathode was very similar to the effect of 3% H 2 O alone, exhibiting performance degradation. Increasing contaminants in the cathode air were found to decrease the performance of the cells. In-operando XRD discovered an increase in MnO concentration and decrease in La 2 O 3 . A gradual expansion of the LSM lattice resulting from loss of Sr or O was discovered in the LSM/YSZ cathodes tested in humid cathode air. The inverse relationship between the unit cell volume and operating voltage suggests a possible correlation between Sr segregation and performance degradation in the LSM/YSZ cathodes.

25 ENERGY STORAGE↗
DOE OSTI2022

Electron Temperature Gradient Driven Transport Model for Tokamak Plasmas

A new model for electron temperature gradient (ETG) modes is developed as a component of the Multi-Mode anomalous transport module [T. Rafiq \textit{et al.,} Phys Plasmas \textbf{20}, 032506 (2013)] to predict a time dependent electron temperature profile in conventional and low aspect ratio tokamaks. This model is based on two-fluid equations that govern the dynamics of low-frequency short- and long-wavelength electromagnetic toroidal ETG driven drift modes. A low collisionality NSTX discharge is used to scan the plasma parameter dependence on the ETG real frequency, growth rate, and electron thermal diffusivity. Electron thermal transport is discovered in the deep core region where modes are more electromagnetic in nature. Several previously reported gyrokinetic trends are reproduced, including the dependencies of density gradients, magnetic shear, $\beta$ and gradient of $\beta$ $(\betap)$, collisionality, safety factor, and toroidicity, where $\beta$ is the ratio of plasma pressure to the magnetic pressure. The electron heat diffusivity associated with the ETG mode is discovered to be on a scale consistent with the experimental diffusivity determined by power balance analysis.

ETG↗
DOE OSTI2021

Mapping the combustion modes of a dual-fuel compression ignition engine

Compression-ignition (CI) engines can produce higher thermal efficiency (TE) and thus lower carbon dioxide (CO 2 ) emissions than spark-ignition (SI) engines. Unfortunately, the overall fuel economy of CI engine vehicles is limited by their emissions of nitrogen oxides (NO x ) and soot, which must be mitigated with costly, resource- and energy-intensive aftertreatment. NO x and soot could also be mitigated by adding premixed gasoline to complement the conventional, non-premixed direct injection (DI) of diesel fuel in CI engines. Several such “dual-fuel” combustion modes have been introduced in recent years, but these modes are usually studied individually at discrete conditions. This paper introduces a mapping system for dual-fuel CI modes that links together several previously studied modes across a continuous two-dimensional diagram. This system includes the conventional diesel combustion (CDC) and conventional dual-fuel (CDF) modes; the well-explored advanced combustion modes of HCCI, RCCI, PCCI, and PPCI; and a previously discovered but relatively unexplored combustion mode that is herein titled “Piston-split Dual-Fuel Combustion” or PDFC. Tests show that dual-fuel CI engines can simultaneously increase TE and lower NO x and/or soot emissions at high loads through the use of Partial HCCI (PHCCI). At low loads, PHCCI is not possible, but either PDFC or RCCI can be used to further improve NO x and/or soot emissions, albeit at slightly lower TE. These results lead to a “partial dual-fuel” multi-mode strategy of PHCCI at high loads and CDC at low loads, linked together by PDFC. Drive cycle simulations show that this strategy, when tuned to balance NO x and soot reductions, can reduce engine-out CO 2 emissions by about 1% while reducing NO x and soot by about 20% each with respect to CDC. This increases emissions of unburnt hydrocarbons (UHC), still in a treatable range (2.0 g/kWh) but five times as high as CDC, requiring changes in aftertreatment strategy.

Engineering↗
DOE OSTI2020

Comparative RNA-Seq transcriptome analyses reveal dynamic time-dependent effects of 56 Fe, 16 O, and 28 Si irradiation on the induction of murine hepatocellular carcinoma

One of the health risks posed to astronauts during deep space flights is exposure to high charge, high-energy (HZE) ions (Z > 13), which can lead to the induction of hepatocellular carcinoma (HCC). However, little is known on the molecular mechanisms of HZE irradiation-induced HCC. We performed comparative RNA-Seq transcriptomic analyses to assess the carcinogenic effects of 600 MeV/n 56 Fe (0.2 Gy), 1 GeV/n 16 O (0.2 Gy), and 350 MeV/n 28 Si (0.2 Gy) ions in a mouse model for irradiation-induced HCC. C3H/HeNCrl mice were subjected to total body irradiation to simulate space environment HZE-irradiation, and liver tissues were extracted at five different time points post-irradiation to investigate the time-dependent carcinogenic response at the transcriptomic level. Our data demonstrated a clear difference in the biological effects of these HZE ions, particularly immunological, such as Acute Phase Response Signaling, B Cell Receptor Signaling, IL-8 Signaling, and ROS Production in Macrophages. Also seen in this study were novel unannotated transcripts that were significantly affected by HZE. To investigate the biological functions of these novel transcripts, we used a machine learning technique known as self-organizing maps (SOMs) to characterize the transcriptome expression profiles of 60 samples (45 HZE-irradiated, 15 non-irradiated control) from liver tissues. A handful of localized modules in the maps emerged as groups of co-regulated and co-expressed transcripts. The functional context of these modules was discovered using overrepresentation analysis. We found that these spots typically contained enriched populations of transcripts related to specific immunological molecular processes (e.g., Acute Phase Response Signaling, B Cell Receptor Signaling, IL-3 Signaling), and RNA Transcription/Expression. A large number of transcripts were found differentially expressed post-HZE irradiation. These results provide valuable information for uncovering the differences in molecular mechanisms underlying HZE specific induced HCC carcinogenesis. Additionally, a handful of novel differentially expressed unannotated transcripts were discovered for each HZE ion. Taken together, these findings may provide a better understanding of biological mechanisms underlying risks for HCC after HZE irradiation and may also have important implications for the discovery of potential countermeasures against and identification of biomarkers for HZE-induced HCC.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2026

Data for Metabolic Engineering of Nonmodel Yeast Issatchenkia orientalis SD108 for 5-Aminolevulinic Acid Production

Biological production of 5‐aminolevulinic acid (5‐ALA) has received growing attentionover theyears.However, thereis the tradeoff between 5‐ALA biosynthesis and cell growth because the fermentation broth will become acidic due to the production of 5‐ALA. To address this limitation, we engineered an acid‐tolerant yeast, Issatchenkia orientalis SD108, for 5‐ALA production. We first discovered that the cell growth rate of I. orientalis SD108 was boosted by 5‐ALA and its endogenous ALA synthetase (ALAS) showed higher activity than those homologs from other yeasts. The titer of 5‐ALA was improved from 28mg/L to 120‐, 150‐, and 300mg/L, by optimizing plasmid design, overexpressing a transporter, and increasing gene copy number, respectively. After redirecting the metabolic flux using the pyruvate decarboxylase (PDC) knockout strain (SD108ΔPDC) and culturing with urea, we increased the titer of 5‐ALA to 510mg/L, a 13‐fold enhancement, proving the importance of the newly identified IoALAS with higher activity and the strategic selection of nitrogen sources for knockout strains. This study demonstrates the acid‐tolerant I. orientalis SD108ΔPDC has a high potential for 5‐ALA production at a large scale in the future.

Bioproducts↗
DOE OSTI2026

Data for High Yield Production of 3-Hydroxypropionic Acid Using Issatchenkia orientalis

Biomanufacturing provides a more sustainable alternative to fossil-based chemical manufacturing. 3-Hydroxypropionic acid (3HP) is a top Department of Energy value-added chemical and precursor to bioplastics, yet cost-effective microbial production remains elusive. Here, we establish the acid-tolerant yeast Issatchenkia orientalis as a robust host for low-pH 3HP biosynthesis. Genome-scale modeling identifies the β-alanine pathway as optimal, offering the highest theoretical yield and lowest oxygen requirement. Thermodynamic analysis confirms its favorability under acidic conditions. Using sequence similarity network analysis, we discover highly active aspartate 1-decarboxylase (PAND), β-alanine-pyruvate aminotransferase (BAPAT), and 3HP dehydrogenase (YDFG), which significantly improve the pathway efficiency. Next, to further elevate the production, pathway optimization through multi-copy PAND integration, byproduct elimination (knockouts of pyruvate decarboxylase and glycerol-3-phosphate dehydrogenase), and reinforcement of aspartate flux by overexpression of pyruvate carboxylase and aspartate amino transferase improves the titer to 29 g/L in shake flasks. Fed-batch fermentation at pH 4 with low-cost corn steep liquor medium further increases the production to 92 g/L with 0.7 g/g yield and 0.55 g/L/h productivity. Techno-economic analysis indicates that such performance could potentially enable a financially viable process for sustainable acrylic acid production. This work establishes I. orientalis as a next-generation platform for cost-effective 3HP production and paves the way toward industrial commercialization.

Bioproducts↗
DOE OSTI2023

Computationally-driven discovery of second harmonic generation in EuBa 3 (B 3 O 6 ) 3 through inversion symmetry breaking

Nonlinear optical (NLO) crystals with superior properties are significant for advancing laser technologies and applications. Introducing rare earth metals to borates is a promising and effective way to modify the electronic structure of a crystal to improve its optical properties in the visible and ultraviolet range. In this work, we computationally discover inversion symmetry breaking in EuBa 3 (B 3 O 6 ) 3 , which was previously identified as centric, and demonstrate noncentrosymmetry via synthesizing single crystals for the first time by the floating zone method. We determine the correct space group to be P 6¯. The material has a large direct bandgap of 5.56 eV and is transparent down to 250 nm. The complete anisotropic linear and nonlinear optical properties were also investigated with a d 11 of ∼0.52 pm/V for optical second harmonic generation. Further, it is Type I and Type II phase matchable. This work suggests that rare earth metal borates are an excellent crystal family for exploring future deep ultraviolet (DUV) NLO crystals. It also highlights how first principles computations combined with experiments can be used to identify noncentrosymmetric materials that have been wrongly assigned to be centrosymmetric.

He, Jingyang (ORCID:0000000238863659)↗
DOE OSTI2023

Leveraging Application Data Constraints to Optimize Database-Backed Web Applications

Exploiting the relationships among data is a classical query optimization technique. As persistent data is increasingly being created and maintained programmatically, prior work that infers data relationships from data statistics misses an important opportunity. We present Coco, the first tool that identifies data relationships by analyzing database-backed applications. Once identified, Coco leverages the constraints to optimize the application's physical design and query execution. Instead of developing a fixed set of predefined rewriting rules, Coco employs an enumerate-test-verify technique to automatically exploit the discovered data constraints to improve query execution. Each resulting rewrite is provably equivalent to the original query. Using 14 real-world web applications, our experiments show that Coco can discover numerous data constraints from code analysis and improve real-world application performance significantly.

Computer Science↗
DOE OSTI2021

Deep learning of parameterized equations with applications to uncertainty quantification

We propose a learning algorithm for discovering unknown parameterized dynamical systems by using observational data of the state variables. Our method is built upon and extends the recent work of discovering unknown dynamical systems, in particular those using deep neural network (DNN). We propose a DNN structure, largely based upon the residual network (ResNet), to not only learn the unknown form of the governing equation but also take into account the random effect embedded in the system, which is generated by the random parameters. Once the DNN model is successfully constructed, it is able to produce system prediction over longer term and for arbitrary parameter values. For uncertainty quantification, it allows us to conduct uncertainty analysis by evaluating solution statistics over the parameter space.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2021

Understanding the dynamics of vacuole trafficking and secretion for enhanced plant storage reserves

Vacuoles are essential in plants and serve roles in both protein and organelle degradation for reutilization and storage of high energy molecules such as storage proteins which are critical for seed germination under normal and stress conditions and impact biomass production and nutrition. In addition, plants secrete many different molecules such as cell wall components, lipids, waxes and others that are important for plant protection, structure and biomass. Vacuole accumulation and secretion are closely linked and highly regulated pathways within the endomembrane trafficking network. We have discovered many drug-like synthetic small molecules that can suppress vacuole trafficking and enhance secretion; other chemicals can enhance vacuole trafficking and suppress secretion. The ability of our compounds to modulate these pathways indicates that these pathways are tightly coupled and highly regulated. Thus, to achieve the goals of enhanced energy reserves or enhanced secretion it is essential to understand how this dynamic is controlled. Bioactive chemicals have provided us unique insight into natural mechanisms controlling the dynamics of vacuole trafficking and secretion that was not possible previously. One such compound, ES2, negatively modulates secretion while enhancing vacuole trafficking. This is the first compound discovered that targets an essential secretory complex known as the exocyst and will reveal important regulatory domains controlling secretion and vacuole trafficking. During the current funding period, we determined the structure of the EXO70A1 in plants and identifying its binding site. To understand the dynamics of vacuole trafficking it is key to have compounds that inhibit vacuole trafficking as well as enhancing it (ES2). We have used sophisticated image analysis to identify another novel compound ES17 that enhances secretion while negatively modulating vacuole trafficking (opposite of ES2). We have already made rapid progress. Our preliminary data indicates that ES17 very specifically targets a late stage of vesicle fusion with the tonoplast which is highly regulated. Thus, ES17 is an ideal compound to dissect the regulation of vacuole targeting dynamics. In addition, we have now synthesized a biotinylated version of ES17 that is fully functional, permitting the use of chemical proteomics to identify the cognate target with a high probability of success. We propose to investigate the ES17 target which can negatively modulate vacuole trafficking and combine this with knowledge of the ES2 target which can promote vacuole trafficking. Dissecting the mechanisms controlling the dynamics of secretion vs vacuole accumulation and the use of synthetic modulators will permit us to understand and regulate trafficking to enhance secretion to the plasma membrane and cell wall or the accumulation of biological energy reserves for increased biomass, nutritional value, stress resistance, and the secretion of specialized plant products.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Evaluation of Hands-On Cybersecurity Skills Development

Cybersecurity is a relatively new and quickly advancing industry, though there is a deficit in industry professionals throughout the world. This deficit is a result of the inability of education to keep up with the continuously changing cyber-threat landscape. A lack of effective, accessible, hands-on training platforms is a barrier for students and professionals who seek to gain the skills and abilities necessary to enter the workforce. Additionally, the lack of adequate training makes it difficult for industry experts to upskill or stay up to date on new advancements within the field of cybersecurity. The goal of this cohort is to discover what makes an effective or ineffective training platform, what platforms are currently available, and to determine the next steps for hands-on learning. Hands-on experience is necessary to create workforce ready professionals, yet it is underutilized by students and professionals of cybersecurity due to costs, availability, and ease of use. This cohort has uncovered hands-on training solutions, identified many effective training solutions, and explored potential improvement to cybersecurity training. These findings resulted in the cohort moving beyond research to test the resources that currently exist or are in development, and to apply that knowledge to discovering and developing engaging hands-on training.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2022

Thermal Neutron Scattering Improvements and Fixes for MCNP6.3 [Slides]

Major error (10,000+ pcm) discovered when using uranium-dioxide or uranium-nitride included in ENDF80SaB2 release. Improvements are being made towards preparing the code for ENDF/B-VIII.1 (ACE) format updates. A minor error (0-10’s pcm) was discovered while working on new capability development for Lab Directed Research & Development (LDRD) project. Previously, only a single coherent or incoherent elastic channel (along with an inelastic channel) was allowed in a thermal neutron scattering evaluation and subsequent processed ACE file. Based on what is planned in ENDF/B-VIII.1 release, there will be (a) new thermal scattering evaluation(s) which uses this mixed-mode coherent and incoherent elastic scattering blocks. MCNP6.3 has been modified to be able to handle such data in the future. Some reorganization has been made in the cross section calculation (acetot, sabcol, colidn) in the presence of TSL data.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2021

City-Wide Distributed Roof-Top Photovoltaic System Adoption Forecast, Grid Impact Simulation, & Neighborhood Microgrid Contribution Assessment

The adoption of distributed photovoltaic (PV) systems grew significantly in recent years. Market projections anticipate future growth for both residential and commercial installations. To understand grid impacts associated with distributed PV, useful hosting capacity studies require accurate representations of the spatial distribution of PV adoptions. Prediction of PV locations and numbers depends on median income data, building use zoning maps, and permit records to understand existing trends and predict future adoption rates and locations throughout an entire city. Using the PV adoption data, advanced and realistic simulations were performed to capture the distributed PV impacts on the grid. Also, using graph theory community detection hundreds of neighborhood microgrids can be discovered for the entire city by identifying densely connected loads that are sparsely connected to other communities. Then, based on the PV adoption predictions, this work identified the contribution of PV within each of the newly discovered graph theory defined microgrid communities.

24 POWER TRANSMISSION AND DISTRIBUTION↗
DOE OSTI2022

A Robust Event Diagnostics Platform: Integrating Tensor Analytics and Machine Learning into Real-time Grid Monitoring

The objective of this project is to develop a robust event diagnostics (RED) platform by integrating state-of-the-art tensor analytics and machine learning into real-time grid monitoring. The proposed platform can effectively analyze and discover the information hiding within the provided PMU data for effective real-time grid monitoring. The proposed RED platform provides a set of robust diagnostics tools for grid operation and management, including 1) data quality assessment, 2) data completion, 3) event detection, and 4) robust event classification. All the functionalities of the RED platform can help the operator to make informed decisions and respond in a timely manner. The developed RED platform will serve as an innovative advisory tool to reliably identify key events and discover new insights about the events and grid characteristics in the PMU data, and contribute to the efficient, safe, reliable operation and design of the nation’s electric system.

24 POWER TRANSMISSION AND DISTRIBUTION↗
DOE OSTI2022

Mining G.O.L.D. (Geothermal Opportunities Leveraged Through Data): Exploring Synergies Between the Geothermal and Mining Industries

This report analyzes potential collaborations between the geothermal and locatable mineral industries (focused on the portion of the Basin and Range Province within Nevada, United States of America). The objectives of this study included analyzing: 1. The type and quality of data collected by the locatable mineral industry to determine feasibility for geothermal resource exploration; 2. The regulatory pathways and potential barriers that could prevent development of geothermal resources discovered via a mining claim (and vice versa) in the United States; 3. The historical development of geothermal resources discovered via mineral exploration data in the United States and illustrations of co-located mining and geothermal power projects; 4. The value propositions for both the locatable mineral and the geothermal industries to collaborate. This article concludes that many of the data collected by the mining industry as part of locatable mineral exploration (e.g., copper, gold, lithium) would also be useful for identifying and developing previously unknown geothermal resources (and in some notable cases, already have led to geothermal resource development). In addition, for minimal costs, the mining industry could catalogue these data and potentially monetize the data itself or use the data in the future to develop a geothermal project. Leveraging these locatable mineral data to develop geothermal resources and/or co-located minerals and geothermal resources would represent significant cost savings when compared to developing geothermal resources under a business-as-usual scenario as well as compared to current generating technologies (e.g., diesel-powered generators) employed at remote mining operations. Ultimately, leveraging mining industry data, knowledge, and expertise serves to effectively expand the geothermal exploration workforce, increase the rate of geothermal resource discovery, and potentially reduce geothermal electricity's levelized cost of energy (LCOE) by 23%-29%.

15 GEOTHERMAL ENERGY↗