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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 595 records · Page 33

Identification of a repressor and an activator of azoreductase gene expression in Pseudomonas putida and Xanthomonas oryzae

Highlights: • Transcriptional regulators of azoreductase of P. putida and X. oryzae were found. • They were named AzoPR (for P. putida) and AzoXR (for X. oryzae). • Despite 51% amino acid identity, AzoPR is a repressor, while AzoXR is an activator. • They respond differently to methyl red which acts as an inducer of gene expression. Genes responsible for the production of azoreductase enzymes in 2 gram-negative bacteria, the soil bacterium Pseudomonas putida (AzoP) and the plant pathogen Xanthomonas oryzae (AzoX), were identified. The deduced amino acid sequences of AzoP and AzoX, share 46% amino acid identity to each other. Two different bacterial transcription factors, a repressor (AzoPR) and an activator (AzoXR), in P. putida and X. oryzae, respectively, were found to be divergently oriented to their respective azoreductase genes. Both regulators are LysR-type transcriptional regulators (LTTR) that respond to the azo dye inducer, methyl red (MR). AzoPR represses transcription of azoP in P. putida, which is reversed when cells are exposed to MR. Interestingly, in X. oryzae, AzoXR positively regulates azoX transcription upon MR induction. Moreover, despite their similarity, with 51% amino acid sequence identity, azoPR and azoXR are expressed differently in response to MR. The transcription of azoPR is increased in a dye concentration-dependent manner, while azoXR transcription is constitutive and relatively higher than azoPR. Both regulators are autoregulatory. Gel mobility shift assays (EMSA) verified the binding between the regulators and their corresponding promoter regions. Additionally, binding only occurred under reduced conditions in the presence of 0.5 mM dithiothreitol (DTT), indicating that the proteins are active in their reduced form.

60 APPLIED LIFE SCIENCES↗

Using Facebook to Recruit Urban Participants for Smartphone-Based Travel Surveys

Social media has become an integral part of everyday life for many individuals, serving as a platform to express opinions, share memories and lifestyles, follow news, and adapt to social trends and norms. The wealth of user information and analytics on these platforms has facilitated the development and sale of tailored products and services, benefiting advertisers and researchers seeking survey participants. Social media advertising has demonstrated its effectiveness in reaching hard-to-reach populations. However, transport researchers have yet to capitalise on this potential fully. This paper presents our experience using social media to recruit participants for two smartphone travel surveys conducted in Australia. We demonstrate that social media recruitment and smartphone-based travel surveys are highly effective, adaptable, and can be rapidly deployed in response to research opportunities, such as during the early phase of the COVID-19 pandemic when traditional methods may be less suitable. This approach also holds great potential for travel surveys targeting the general population. This paper shares several lessons from this experiment, including our administrative approach and detailed technical instructions to utilise open-source software tools for conducting smartphone travel surveys like ours. This approach significantly reduces study costs compared to most commercial solutions.

97 MATHEMATICS AND COMPUTING↗

Data-Link and Surface Map Traffic Intent Displays for NextGen 4DT and Equivalent Visual Surface Operations

By 2025, U.S. air traffic is predicted to increase 3-fold and may strain the current air traffic management system, which may not be able to accommodate this growth. In response to this challenge, a consortium of industry, academia and government agencies have proposed a revolutionary new concept for U.S. aviation operations, termed the Next Generation Air Transportation System or "NextGen". Many key capabilities are being identified to enable NextGen, including the concept of "net-centric" operations whereby each aircraft and air services provider shares information to allow real-time adaptability to ever-changing factors such as weather, traffic, flight trajectories, and security. Data-link is likely to be the primary source of communication in NextGen. Because NextGen represents a radically different approach to air traffic management and requires a dramatic shift in the tasks, roles, and responsibilities for the flight deck, there are numerous research issues and challenges that must be overcome to ensure a safe, sustainable air transportation system. Flight deck display and crew-vehicle interaction concepts are being developed that proactively investigate and overcome potential technology and safety barriers that might otherwise constrain the full realization of NextGen.

Shelton, Kevin J.↗

Structure of Fission Yeast Transcription Factor Pho7 Bound to pho1 Promoter DNA and Effect of Pho7 Mutations on DNA Binding and Phosphate Homeostasis

Pho7 is the Schizosaccharomyces pombe fission yeast Zn 2 Cys 6 transcriptional factor that drives a response to phosphate starvation in which phosphate acquisition genes are upregulated. Here we report a crystal structure at 1.6-Å resolution of the Pho7 DNA-binding domain (DBD) bound at its target site 2 in the pho1 promoter (5'-TCGGAAATTAAAAA). Comparison to the previously reported structure of Pho7 DBD in complex with its binding site in the tgp1 promoter (5'-TCGGACATTCAAAT) reveals shared determinants of target site specificity as well as variations in the protein-DNA interface that accommodate different promoter DNA sequences. Mutagenesis of Pho7 amino acids at the DNA interface identified nucleobase contacts at the periphery of the footprint that are essential for the induction of pho1 expression in response to phosphate starvation and for Pho7 binding to site 1 in the pho1 promoter.

59 BASIC BIOLOGICAL SCIENCES↗

Potent Inhibitors of Acetyltransferase Eis Overcome Kanamycin Resistance in Mycobacterium tuberculosis

A major cause of tuberculosis (TB) resistance to the aminoglycoside kanamycin (KAN) is the Mycobacterium tuberculosis (Mtb) acetyltransferase Eis. Upregulation of this enzyme is responsible for inactivation of KAN through acetylation of its amino groups. A 123 000-compound high-throughput screen (HTS) yielded several small-molecule Eis inhibitors that share an isothiazole S,S-dioxide heterocyclic core. These were investigated for their structure–activity relationships. Crystal structures of Eis in complex with two potent inhibitors show that these molecules are bound in the conformationally adaptable aminoglycoside binding site of the enzyme, thereby obstructing binding of KAN for acetylation. Importantly, we demonstrate that several Eis inhibitors, when used in combination with KAN against resistant Mtb, efficiently overcome KAN resistance. Furthermore, this approach paves the way toward development of novel combination therapies against aminoglycoside-resistant TB.

59 BASIC BIOLOGICAL SCIENCES↗

Quantum real-time evolution of entanglement and hadronization in jet production: Lessons from the massive Schwinger model

The possible link between entanglement and thermalization, and the dynamics of hadronization are addressed by studying the real-time response of the massive Schwinger model coupled to external sources. This setup mimics the production and fragmentation of quark jets, as the Schwinger model and quantum chromodynamics (QCD) share the properties of confinement and chiral symmetry breaking. By using simulations of quantum dynamics on classical hardware, we study the entanglement between the produced jets, and observe the growth of the corresponding entanglement entropy in time. This growth arises from the increased number of contributing eigenstates of the reduced density matrix with sufficiently large and close eigenvalues. We also investigate the physical nature of these eigenstates, and find that at early times they correspond to fermionic Fock states. We then observe the transition from these fermionic Fock states to mesonlike bound states as a function of time. In other words, we observe how hadronization develops in real time. At late times, the local observables at midrapidity (such as the fermion density and the electric field) approach approximately constant values, suggesting the onset of equilibrium and approach to thermalization. Published by the American Physical Society 2024

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Retrospective analysis of biochemical limitations to photosynthesis in 49 species: C 4 crops appear still adapted to pre‐industrial atmospheric [ CO 2 ]

Abstract Leaf CO 2 uptake ( A ) in C 4 photosynthesis is limited by the maximum apparent rate of PEPc carboxylation ( V pmax ) at low intercellular [CO 2 ] ( c i ) with a sharp transition to a c i ‐saturated rate ( V max ) due to co‐limitation by ribulose‐1:5‐bisphosphate carboxylase/oxygenase (Rubisco) and regeneration of PEP. The response of A to c i has been widely used to determine these two parameters. V max and V pmax depend on different enzymes but draw on a shared pool of leaf resources, such that resource distribution is optimized, and A maximized, when V max and V pmax are co‐limiting. We collected published A / c i curves in 49 C 4 species and assessed variation in photosynthetic traits between phylogenetic groups, and as a function of atmospheric [CO 2 ]. The balance of V max ‐ V pmax varied among evolutionary lineages and C 4 subtypes. Operating A was strongly V max ‐limited, such that re‐allocation of resources from V pmax towards V max was predicted to improve A by 12% in C 4 crops. This would not require additional inputs but rather altered partitioning of existing leaf nutrients, resulting in increased water and nutrient‐use efficiency. Optimal partitioning was achieved only in plants grown at pre‐industrial atmospheric [CO 2 ], suggesting C 4 crops have not adjusted to the rapid increase in atmospheric [CO 2 ] of the past few decades.

Pignon, Charles P.↗

Structure-based decoupling of the pro- and anti-inflammatory functions of interleukin-10

Interleukin-10 (IL-10) is an immunoregulatory cytokine with both anti-inflammatory and immunostimulatory properties and is frequently dysregulated in disease. We used a structure-based approach to deconvolute IL-10 pleiotropy by determining the structure of the IL-10 receptor (IL-10R) complex by cryo–electron microscopy at a resolution of 3.5 angstroms. The hexameric structure shows how IL-10 and IL-10Rα form a composite surface to engage the shared signaling receptor IL-10Rβ, enabling the design of partial agonists. IL-10 variants with a range of IL-10Rβ binding strengths uncovered substantial differences in response thresholds across immune cell populations, providing a means of manipulating IL-10 cell type selectivity. Some variants displayed myeloid-biased activity by suppressing macrophage activation without stimulating inflammatory CD8 + T cells, thereby uncoupling the major opposing functions of IL-10. These results provide a mechanistic blueprint for tuning the pleiotropic actions of IL-10.

60 APPLIED LIFE SCIENCES↗

Systems level insights into alternate methane cycling modes phase II: deciphering mechanistic details of interspecies cooperation through manipulation of model microbial communities. Final Technical Report

Activities from this DOE sponsored project can be divided into three broad areas: (1) Isolation, characterization and sequencing of genomes of novel model organisms representing species active in methane oxidation, as judged from prior functional metagenomics-based experiments; (2) Manipulation of natural communities consuming methane, followed by observation on community dynamics and species succession, under specific environmental pressures such as variable O 2 and methane concentrations; and (3) Development of synthetic community models, from simple to complex, followed by observations on community dynamics and transcript and metabolite patterns. From these efforts, we have established several dozen novel model organisms representing different types of methane-utilizing species, different types of methylotrophic non-methane-utilizing guilds, as well as non-methylotrophic heterotrophs of different types, all with sequenced and manually curated genome annotations. From manipulation of natural sediment communities under controlled environmental conditions, we have deduced prominent species dynamics patterns and identified most important players in methane metabolism. We have also observed specific patterns in functional partnerships. Based on the discoveries from natural community manipulations, we have established model synthetic communities, ranging from simple, two-species, to complex, 50-species synthetic communities. The patterns from manipulation of synthetic communities were compared to the ones from natural communities. Synthetic communities were also characterized in terms of differential gene expression in response to community living, highlighting the role of alternative methanol dehydrogenases in community function. These observations were further validated through targeted metabolomics, identifying methanol as one major metabolite shared among community members.

59 BASIC BIOLOGICAL SCIENCES↗

Managing Cyber Supply Chain Risk for Renewable Energy Technologies

On July 1, 2021, the U.S. Department of Energy (DOE) Office of Cybersecurity, Energy Security, and Emergency Response (CESER) hosted a virtual workshop facilitated by the National Renewable Energy Laboratory (NREL). Cybersecurity supply chain experts, researchers, and leaders in government and industry came together to share information on current and future challenges in securing emerging technologies and technical architecture. From a cybersecurity perspective, we need to move from a cybersecurity approach that focuses principally on legacy asset owners to one that incorporates more emphasis on end-point device manufacturers and third-party integrators. Cybersecurity for the global digital supply chain for manufacturers of consumer end-point devices—such as smart solar inverters and smart electric vehicle (EV) chargers—will be critical to the future cyber health of the grid.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

MINOTAUR (Maryland's innovative orbital technologically advanced University rocket)

Over the past decade, there has been an increasing interest in designing small commercial launch vehicles. Some of these designs include OSC's Pegasus, and AMROC's Aquila. Even though these vehicles are very different in their overall design characteristics, they all share a common thread of being expensive to design and manufacture. Each of these vehicles has an estimated production and operations cost of over $15000/kg of payload. In response to this high cost factor, the University of Maryland is developing a cost-effective alternative launch vehicle, Maryland's Innovative Orbital Technologically Advanced University Rocket (MINOTAUR). A preliminary cost analysis projects that MINOTAUR will cost under $10000/kg of payload. MINOTAUR will also serve as an enriching project devoted to an entirely student-designed-and-developed launch vehicle. This preliminary design of MINOTAUR was developed entirely by undergraduates in the University of Maryland's Space Vehicle Design class. At the start of the project, certain requirements and priorities were established as a basis from which to begin the design phase: (1) carry a 100 kg payload into a 200 km circular orbit; (2) provide maximum student involvement in the design, manufacturing, and launch phases of the project; and (3) use hybrid propulsion throughout. The following is the list of the project's design priorities (from highest to lowest): (1) safety, (2) cost, (3) minimum development time, (4) maximum use of the off-the-shelf components, (5) performance, and (6) minimum use of pyrotechnics.

Lewis, Mark J.↗

Exploring the use of I/O nodes for computation in a MIMD multiprocessor

As parallel systems move into the production scientific-computing world, the emphasis will be on cost-effective solutions that provide high throughput for a mix of applications. Cost effective solutions demand that a system make effective use of all of its resources. Many MIMD multiprocessors today, however, distinguish between 'compute' and 'I/O' nodes, the latter having attached disks and being dedicated to running the file-system server. This static division of responsibilities simplifies system management but does not necessarily lead to the best performance in workloads that need a different balance of computation and I/O. Of course, computational processes sharing a node with a file-system service may receive less CPU time, network bandwidth, and memory bandwidth than they would on a computation-only node. In this paper we begin to examine this issue experimentally. We found that high performance I/O does not necessarily require substantial CPU time, leaving plenty of time for application computation. There were some complex file-system requests, however, which left little CPU time available to the application. (The impact on network and memory bandwidth still needs to be determined.) For applications (or users) that cannot tolerate an occasional interruption, we recommend that they continue to use only compute nodes. For tolerant applications needing more cycles than those provided by the compute nodes, we recommend that they take full advantage of both compute and I/O nodes for computation, and that operating systems should make this possible.

Kotz, David↗

Direction of Perceived Motion and Eye Movements Show Similar Biases for Asymmetrically Windowed Moving Plaids

We have shown that moving a plaid in an asymmetric window biases the perceived direction of motion (Beutter, Mulligan & Stone, ARVO 1994). We now explore whether these biased motion signals might also drive the smooth eye-movement response by comparing the perceived and tracked directions. The human smooth oculomotor response to moving plaids appears to be driven by the perceived rather than the veridical direction of motion. This suggests that human motion perception and smooth eye movements share underlying neural motion-processing substrates as has already been shown to be true for monkeys.

Beutter, B. R.↗

Cybersecurity for the Operational Technology Environment (CyOTE)

The Department of Energy’s Cybersecurity, Energy Security, and Emergency Response Office (CESER) has partnered with Idaho National Laboratory (INL) and energy companies to develop CyOTE. This research initiative addresses cybersecurity threats against operational technology (OT) networks by sharing intelligence about adversarial tactics and techniques with the energy sector. CyOTE improves the sector’s ability to detect anomalous behavior that indicates potential malicious cyber activity in OT networks.

99 GENERAL AND MISCELLANEOUS↗

Utah FORGE: Fiber Optic Cumulative Strain Change and Strain Change Rate Data From Well 16A Stimulation at Well 16B

This dataset includes Rayleigh Frequency Shift (RFS) Distributed Strain Sensing (DSS) cumulative strain change and change rate data. The data was acquired during the stimulation of Utah FORGE Well 16A(78)-32 in April 2024 via fiber installed in Well 16B(78)-32. The fiber optic data was acquired using Neubrex SR7000 RFS DSS Distributed Strain sensing instruments and is saved here in the format of HDF5 files (.h5 extension). The spatial sampling on the full wellbore profiles is 0.20 centimeters. The data is the far field strain change response from a baseline profile made down the 16B well on April 3, 2024, so each strain value represents the strain change or strain change rate at each depth relative to the baseline reference profile. The data arrays for each type share the same dimensions (number of channels and time stamps).

15 GEOTHERMAL ENERGY↗

Benzo[a]pyrene affects Jurkat T cells in the activated state via the antioxidant response element dependent Nrf2 pathway leading to decreased IL-2 secretion and redirecting glutamine metabolism

There is a clear evidence that environmental pollutants, such as benzo[a]pyrene (B[a]P), can have detrimental effects on the immune system, whereas the underlying mechanisms still remain elusive. Jurkat T cells share many properties with native T lymphocytes and therefore are an appropriate model to analyze the effects of environmental pollutants on T cells and their activation. Since environmental compounds frequently occur at low, not acute toxic concentrations, we analyzed the effects of two subtoxic concentrations, 50 nM and 5 μM, on non- and activated cells. B[a]P interferes directly with the stimulation process as proven by an altered IL-2 secretion. Furthermore, B[a]P exposure results in significant proteomic changes as shown by DIGE analysis. Pathway analysis revealed an involvement of the AhR independent Nrf2 pathway in the altered processes observed in unstimulated and stimulated cells. A participation of the Nrf2 pathway in the change of IL-2 secretion was confirmed by exposing cells to the Nrf2 activator tBHQ. tBHQ and 5 μM B[a]P caused similar alterations of IL-2 secretion and glutamine/glutamate metabolism. Moreover, the proteome changes in unstimulated cells point towards a modified regulation of the cytoskeleton and cellular stress response, which was proven by western blotting. Additionally, there is a strong evidence for alterations in metabolic pathways caused by B[a]P exposure in stimulated cells. Especially the glutamine/glutamate metabolism was indicated by proteome pathway analysis and validated by metabolite measurements. The detrimental effects were slightly enhanced in stimulated cells, suggesting that stimulated cells are more vulnerable to the environmental pollutant model compound B[a]P. - Highlights: • B[a]P affects the proteome of Jurkat T cells also at low concentrations. • Exposure to B[a]P (50 nM, 5 μM) did not change Jurkat T cell viability. • Both B[a]P concentrations altered the IL-2 secretion of stimulated cells. • 608 different protein spots of Jurkat T cells were quantified using 2-DE-DIGE. • Pathway analysis identified Nrf2 and AhR pathway as regulated.

60 APPLIED LIFE SCIENCES↗

Climate Change Projection in the Twenty-First Century Simulated by NIMS-KMA CMIP6 Model Based on New GHGs Concentration Pathways

Abstract The National Institute of Meteorological Sciences-Korea Meteorological Administration (NIMS-KMA) has participated in the Coupled Model Inter-comparison Project (CMIP) and provided long-term simulations using the coupled climate model. The NIMS-KMA produces new future projections using the ensemble mean of KMA Advanced Community Earth system model (K-ACE) and UK Earth System Model version1 (UKESM1) simulations to provide scientific information of future climate changes. In this study, we analyze four experiments those conducted following the new shared socioeconomic pathway (SSP) based scenarios to examine projected climate change in the twenty-first century. Present day (PD) simulations show high performance skill in both climate mean and variability, which provide a reliability of the climate models and reduces the uncertainty in response to future forcing. In future projections, global temperature increases from 1.92 °C to 5.20 °C relative to the PD level (1995–2014). Global mean precipitation increases from 5.1% to 10.1% and sea ice extent decreases from 19% to 62% in the Arctic and from 18% to 54% in the Antarctic. In addition, climate changes are accelerating toward the late twenty-first century. Our CMIP6 simulations are released to the public through the Earth System Grid Federation (ESGF) international data sharing portal and are used to support the establishment of the national adaptation plan for climate change in South Korea.

54 ENVIRONMENTAL SCIENCES↗

ENLIGHTEN: Electrical Network Line Inspection Guided by High-Speed Technology & Electromagnetic Navigation

Natural disasters are a major cause of power outages, primarily due to their damage to power line infrastructure. As a result, the current state of power maintenance, with a heavy reliance on manual labor, is in trouble. Its lack of speed and autonomy must be addressed to ensure power security for households and institutions worldwide. This innovative approach explores how High-Speed Unmanned Aerial Vehicle (HSUAV) technology can inspect power line infrastructure rapidly in response to natural disaster scenarios. The HSUAV technology will be accompanied by enhanced sensory equipment including light detection and ranging (LiDAR), thermal imaging, and electromagnetic field (EMF) navigation. It would also be supplemented by innovative forms of machine learning models and recharging systems to efficiently detect anomalies in power line infrastructure. The proposed system, ENLIGHTEN, can help restore power in affected communities after a devastating natural disaster, greatly improving relief efforts. In the future, ENLIGHTEN can be expanded beyond the United States and shared worldwide, effectively mitigating the consequences on a larger scale.

UAV systems, Power line management, Natural disast↗