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At least 595 records · Page 33
All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

The direct and indirect drivers shaping RNA viral communities in grassland soil

Recent studies have revealed diverse RNA viral communities in soils. Yet, how environmental factors influence soil RNA viruses remains largely unknown. Here, we recovered RNA viral communities from 24 metatranscriptomes sequenced from grassland soils managed under a range of environmental conditions including 1) water content: 100% and 25% water holding capacity, 2) plant presence: planted with tall wheatgrass (Thinopyrum ponticum) and bare soil, 3) cultivar type: Alkar and Jose, and 4) soil depth: 0-5 cm and 15-25 cm. The recovered RNA viral communities were novel with nearly one-third of the RNA viral contigs uniquely detected in the studied grassland. The classified RNA viral contigs are mostly known as eukaryotic RNA viruses (74.7%) belonging to Phyla Duplornaviricota, Kitrinoviricota, Lenarviricota, and Pisuviricota. Eukaryotic RNA viruses of Family Mitoviridae as well as their natural hosts, Fungi, are one of the most dominant taxa. Consistent with the results of nonmetric multidimensional scaling analysis, the four environmental conditions (water content, plant presence, cultivar, and soil depth) significantly influence the assemblages of soil RNA viral communities as suggested by the correlation analysis and the random forest algorithm. The modularity analysis of the factor network and the structural equation modeling further support the hierarchical associations among the four environmental factors and the community factors representing the co-existing eukaryotic, prokaryotic, and RNA viral communities. The soil water content, plant presence, and type of cultivar demonstrate a significant positive impact on eukaryotic RNA viral richness directly as well as indirectly on eukaryotic RNA viral abundance via influencing the co-existing eukaryotic members in this soil. Our data also provide statistical support for the negative influence of soil depth on soil eukaryotic richness and abundances resulting in its indirect impact on soil eukaryotic RNA viral communities. This study provides field-relevant information on how environmental and community factors collectively shape soil RNA communities and contribute to ecological understanding of RNA viral survival under various environmental conditions and virus-host interactions in soil.

Wu, Ruonan↗
DOE OSTI2012

The Effects of Radiation and Dose-Fractionation on Cancer and Non-Tumor Disease Development

The Janus series of radiation experiments, conducted from 1970 to 1992, explored the effects of gamma and neutron radiation on animal lifespan and disease development. Data from these experiments presents an opportunity to conduct a large scale analysis of both tumor and non-tumor disease development. This work was focused on a subset of animals from the Janus series of experiments, comparing acute or fractionated exposures of gamma or neutron radiation on the hazards associated with the development of tumor and non-tumor diseases of the liver, lung, kidney or vascular system. This study also examines how the co-occurrence of non-tumor diseases may affect tumor-associated hazards. While exposure to radiation increases the hazard of dying with tumor and non-tumor diseases, dose fractionation modulates these hazards, which varies across different organ systems. Finally, the effect that concurrent non-cancer diseases have on the hazard of dying with a tumor also differs by organ system. These results highlight the complexity in the effects of radiation on the liver, lung, kidney and vascular system.

Environmental Sciences & Ecology↗
DOE OSTI2017

Evolving Waves and Turbulence in the Outer Corona and Inner Heliosphere: The Accelerating Expanding Box

Alfvénic fluctuations in the solar wind display many properties reflecting an ongoing nonlinear cascade, e.g., a well-defined spectrum in frequency, together with some characteristics more commonly associated with the linear propagation of waves from the Sun, such as the variation of fluctuation amplitude with distance, dominated by solar wind expansion effects. Therefore, both nonlinearities and expansion must be included simultaneously in any successful model of solar wind turbulence evolution. Because of the disparate spatial scales involved, direct numerical simulations of turbulence in the solar wind represent an arduous task, especially if one wants to go beyond the incompressible approximation. Indeed, most simulations neglect solar wind expansion effects entirely. Here we develop a numerical model to simulate turbulent fluctuations from the outer corona to 1 au and beyond, including the sub-Alfvénic corona. The accelerating expanding box (AEB) extends the validity of previous expanding box models by taking into account both the acceleration of the solar wind and the inhomogeneity of background density and magnetic field. Our method incorporates a background accelerating wind within a magnetic field that naturally follows the Parker spiral evolution using a two-scale analysis in which the macroscopic spatial effect coupling fluctuations with background gradients becomes a time-dependent coupling term in a homogeneous box. In this paper we describe the AEB model in detail and discuss its main properties, illustrating its validity by studying Alfvén wave propagation across the Alfvén critical point.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2019

Design and Scaling of an Omega-EP Experiment to Study Cold Streams Feeding Early Galaxies

Galaxies form in the centers of dark matter halos, and grow by accreting gas from the halos. The gas supply to the galaxy is the bottleneck for star formation and ultimately sets its stellar mass and star formation rate. As gas falls from the cosmic web into the halos, the highly supersonic infalling gas (Mach ~20 for Milky Way-type halos) eventually forms a shock. If cooling is inefficient, this shock quickly stabilizes as a quasi-static slowly expanding accretion shock at the outer edge of the halo. If, however, cooling is important, a recent theory suggests that filaments of gas from the cosmic web will freefall unshocked through the halos, and shock only at the outskirts of the central galaxies. Furthermore, these "cold streams" allow for a steady supply of gas into the galaxies and for more efficient star formation. The cold dense filament flowing into a hot less dense environment is potentially Kelvin–Helmholtz unstable. This instability may hinder the ability of the stream to deliver gas deeply enough into the halo. A design of a well-scaled laser experiment on Omega-EP meant for studying this phenomena is presented in the current work, with relevant theory informed by 2D hydrodynamic simulations of the experiment. We establish the hydrodynamic scaling analysis between the cosmological system and its experimental analog, presenting the experiment as an adiabatic upper limit to informing the role of mixing due to the Kelvin–Helmholtz instability.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

Dynamical Scaling Reveals Topological Defects and Anomalous Evolution of a Photoinduced Phase Transition

Nonequilibrium states of quantum materials can exhibit exotic properties and enable unprecedented functionality and applications. These transient states are inherently inhomogeneous, characterized by the formation of topologically protected structures, requiring nanometer spatial resolution on femtosecond timescales to resolve their evolution. Using ultrafast total x-ray scattering at a free electron laser and a sophisticated scaling analysis, we gain unique access to the dynamics on the relevant mesoscopic lengthscales. Our results provide direct evidence that ultrafast excitation of LaTe$_3$ leads to formation of topological vortex strings of the charge density wave. These dislocations of the charge density wave exhibit anomalous, subdiffusive dynamics, slowing the equilibration process, providing rare insight into the nonequilibrium mesoscopic response in a quantum material. Our findings establish a general framework to investigate properties of topological defects, which are expected to be ubiquitous in nonequilibrium phase transitions and may arrest equilibration and enhance competing orders.

FOS: Physical sciences↗
DOE OSTI2016

Observed correlations between aerosol and cloud properties in an Indian Ocean trade cumulus regime

There are many contributing factors which determine the micro- and macrophysical properties of clouds, including atmospheric vertical structure, dominant meteorological conditions, and aerosol concentration, all of which may be coupled to one another. In the quest to determine aerosol effects on clouds, these potential relationships must be understood. Here we describe several observed correlations between aerosol conditions and cloud and atmospheric properties in the Indian Ocean winter monsoon season. In the CARDEX (Cloud, Aerosol, Radiative forcing, Dynamics EXperiment) field campaign conducted in February and March 2012 in the northern Indian Ocean, continuous measurements were made of atmospheric precipitable water vapor (PWV) and the liquid water path (LWP) of trade cumulus clouds, concurrent with measurements of water vapor flux, cloud and aerosol vertical profiles, meteorological data, and surface and total-column aerosol from instrumentation at a ground observatory and on small unmanned aircraft. We present observations which indicate a positive correlation between aerosol and cloud LWP only when considering cases with low atmospheric water vapor (PWV < 40 kg m –2 ), a criterion which acts to filter the data to control for the natural meteorological variability in the region. We then use the aircraft and ground-based measurements to explore possible mechanisms behind this observed aerosol–LWP correlation. The increase in cloud liquid water is found to coincide with a lowering of the cloud base, which is itself attributable to increased boundary layer humidity in polluted conditions. High pollution is found to correlate with both higher temperatures and higher humidity measured throughout the boundary layer. A large-scale analysis, using satellite observations and meteorological reanalysis, corroborates these covariations: high-pollution cases are shown to originate as a highly polluted boundary layer air mass approaching the observatory from a northwesterly direction. The source air mass exhibits both higher temperatures and higher humidity in the polluted cases. While the warmer temperatures may be attributable to aerosol absorption of solar radiation over the subcontinent, the factors responsible for the coincident high humidity are less evident: the high-aerosol conditions are observed to disperse with air mass evolution, along with a weakening of the high-temperature anomaly, while the high-humidity condition is observed to strengthen in magnitude as the polluted air mass moves over the ocean toward the site of the CARDEX observations. In conclusion, potential causal mechanisms of the observed correlations, including meteorological or aerosol-induced factors, are explored, though future research will be needed for a more complete and quantitative understanding of the aerosol–humidity relationship.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Comment on “Review of experimental studies of secondary ice production” by Korolev and Leisner (2020)

Abstract. This is a comment on the review by Korolev and Leisner (2020, hereafter KL2020). The only two laboratory/field studies ever to measure the breakup in ice–ice collisions for in-cloud conditions were negatively criticised by KL2020, as were our subsequent theoretical and modelling studies informed by both studies. First, hypothetically, even without any further laboratory experiments, such theoretical and modelling studies would continue to be possible, based on classical mechanics and statistical physics. They are not sensitive to the accuracy of lab data for typical situations, partly because the nonlinear explosive growth of ice concentrations continues until some maximum concentration is reached. To a degree, the same final concentration is expected regardless of the fragment number per collision. Second, there is no evidence that both lab/field observational studies characterising fragmentation in ice–ice collisions are either mutually conflicting or erroneous such that they cannot be used to represent this breakup in numerical models, contrary to the review. The fact that the ice spheres of one experiment were hail sized (2 cm) is not a problem if a universal theoretical formulation, such as ours, with fundamental dependencies, is informed by it. Although both lab/field studies involved head-on collisions, rotational kinetic energy for all collisions generally is only a small fraction of the initial collision kinetic energy (CKE) anyway. Although both lab/field experiments involved fixed targets, that is not a problem since the fixing of the target is represented via CKE in any energy-based formulation such as ours. Finally, scaling analysis suggests that the breakup of ice during sublimation can make a significant contribution to ice enhancement in clouds, again contrary to the impression given by the review.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Factorized visual representations in the primate visual system and deep neural networks

Object classification has been proposed as a principal objective of the primate ventral visual stream and has been used as an optimization target for deep neural network models (DNNs) of the visual system. However, visual brain areas represent many different types of information, and optimizing for classification of object identity alone does not constrain how other information may be encoded in visual representations. Information about different scene parameters may be discarded altogether (‘invariance’), represented in non-interfering subspaces of population activity (‘factorization’) or encoded in an entangled fashion. In this work, we provide evidence that factorization is a normative principle of biological visual representations. In the monkey ventral visual hierarchy, we found that factorization of object pose and background information from object identity increased in higher-level regions and strongly contributed to improving object identity decoding performance. We then conducted a large-scale analysis of factorization of individual scene parameters – lighting, background, camera viewpoint, and object pose – in a diverse library of DNN models of the visual system. Models which best matched neural, fMRI, and behavioral data from both monkeys and humans across 12 datasets tended to be those which factorized scene parameters most strongly. Notably, invariance to these parameters was not as consistently associated with matches to neural and behavioral data, suggesting that maintaining non-class information in factorized activity subspaces is often preferred to dropping it altogether. Thus, we propose that factorization of visual scene information is a widely used strategy in brains and DNN models thereof.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1971

A preliminary assessment of Martian wind regimes

Martian surface topography effects on mean wind from time independent and frictionless thermal wind equation solution for radiative-convective atmospheres at scaling analysis level

Gierasch, P.↗
NASA NTRS1973

Central Atlantic regional ecological test site: A prototype regional environmental information system

The author has identified the following significant results. A comparison of photomorphic regions from an uncontrolled ERTS-1 mosaic of CARETS to land use areas on a map published in the National Atlas revealed close correlations in non-urban regions. Such regional scale analysis of ERTS-1 data has the potential for providing an economical sampling strategy for selecting sites for more detailed field measurements if other environmental variables can be correlated with patterns on ERTS-1 imagery. ERTS-1 imagery has also revealed for the first time the appearance of CARETS during the winter months. Investigators have identified extensive areas of conifers, which have previously been indistinguishable from deciduous vegetation. Imagery has also shown very clearly the extent of snow cover at a particular time over the region. The evaluation of ERTS-1 imagery used for the land use mapping of the shore zone of CARETS, has shown that the presence or absence of elements of an hierarchal system of shoreline landforms can help identify areas of potential rapid change. Changes in land use class distributions on the Barrier Islands signify the environmental response to natural and man-caused processes. Both environmental vulnerability and sensitivity can be estimated from the repetitive ERTS-1 coverage of long reaches of the CARETS coast. Results indicate potential applications to land use planning, management, and regional environmental quality analysis.

Alexander, R. H.↗
NASA NTRS1973

A first look at atmospheric dynamics and temperature variations on Titan.

Pollack (1973) has used a radiative equilibrium model to match radiometric data for Titan and infers the atmospheric mass, composition, opacity, and gross vertical thermal structure. These results are used to estimate the atmospheric temperature variations by means of scaling analysis, taking into account dynamics both for a baroclinic wave regime and for an axially symmetric circulation regime. Horizontal temperature variations of the atmosphere and surface are found to be very small, and the circulation is found to be weak and probably axially symmetric. The small temperature variations appear to preclude the storage of volatiles in polar caps, so that the present atmospheric methane content may be due to a balance between outgassing and photodissociation.

Leovy, C. B.↗
NASA NTRS1974

The structure and circulation of the deep Venus atmosphere

A simple model for the structure of a nonrotating Hadley regime in an atmosphere with large thermal inertia is developed. The radiative fluxes are estimated by using a linearization about the radiative equilibrium state, and the dynamical fluxes are estimated by using scaling analysis. The requirement that differential heating by these fluxes be in balance in both the meridional and vertical directions leads to two equations for the mean static stability and meridional temperature contrast. The solution depends on two parameters: the strength of the radiative heating, as measured by the static stability of the radiative equilibrium state; and the ratio of the time it takes an external gravity wave to traverse the atmosphere to the time it would take the atmosphere to cool off radiatively. It is shown that it is not necessary to invoke convection to explain the approximate adiabatic lapse rate in the Venus atmosphere, but a greenhouse effect is necessary to explain the high surface temperatures.

Stone, P. H.↗
NASA NTRS1975

Remote sensing applied to numerical modelling

Progress and remaining difficulties in the construction of predictive mathematical models of large bodies of water as ecosystems are reviewed. Surface temperature is at present the only variable than can be measured accurately and reliably by remote sensing techniques, but satellite infrared data are of sufficient resolution for macro-scale modeling of oceans and large lakes, and airborne radiometers are useful in meso-scale analysis (of lakes, bays, and thermal plumes). Finite-element and finite-difference techniques applied to the solution of relevant coupled time-dependent nonlinear partial differential equations are compared, and the specific problem of the Biscayne Bay and environs ecosystem is tackled in a finite-differences treatment using the rigid-lid model and a rigid-line grid system.

Sengupta, S.↗
NASA NTRS1978

Photoelectrons and electron temperatures in the Venus ionosphere

Solar wind induced magnetic fields may be present in the dayside ionosphere of Venus. A scale analysis and detailed calculations of the effects of different field line orientations on photoelectron transport and electron temperature show that horizontal magnetic fields considerably alter the profiles of electron heating and temperature and photoelectron flux. Direct injection of solar wind electrons has been considered, and the effects are minor. No evidence is found to support the suggestion that a sharp gradient in electron temperature is the cause of certain features in the Mariner-10 electron density profile.

Butler, D. M.↗
NASA NTRS1981

Medium-range, objective predictions of thunderstorm location and severity for aviation

This paper presents a computerized technique for medium-range (12-48h) prediction of both the location and severity of thunderstorms utilizing atmospheric predictions from the National Meteorological Center's limited-area fine-mesh model (LFM). A regional-scale analysis scheme is first used to examine the spatial and temporal distributions of forecasted variables associated with the structure and dynamics of mesoscale systems over an area of approximately 10 to the 6th sq km. The final prediction of thunderstorm location and severity is based upon an objective combination of these regionally analyzed variables. Medium-range thunderstorm predictions are presented for the late afternoon period of April 10, 1979, the day of the Wichita Falls, Texas tornado. Conventional medium-range thunderstorm forecasts, made from observed data, are presented with the case study to demonstrate the possible application of this objective technique in improving 12-48 h thunderstorm forecasts for aviation.

Wilson, G. S.↗
NASA NTRS1983

On the maintenance of the Marine boundary layer-free tropospheric gradient of transient tracers

A simple model of the marine boundary layer is used to arrive at a steady-state budget for trace gases in this layer. Five processes maintain the tracer balance in the layer. The first is a large-scale horizontal convergence of the tracer; the second is the pumping by clouds of the tracer out of the boundary layer into the free troposphere; the third is penetration by the tracer from the free troposphere into the marine boundary from compensating subsidence in the cloud-free air surrounding cumulus clouds; the fourth is sea surface emission or deposition of the tracer; and the fifth is in situ photochemical production or loss of the tracer within the marine boundary layer. The budget equation is used in deriving an expression for the mixing ratio difference between the two regions. A scale analysis suggests that the mixing ratio difference between the marine boundary layer and the free troposphere can be an order of magnitude smaller in disturbed weather conditions than in suppressed conditions, showing that the difference in chemical concentrations between the free troposphere and the marine boundary layer cannot be rationalized solely on the basis of chemical measurements.

Gidel, L. T.↗