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DOE OSTI2022

Improving Dose-Optimization Processes Used in Oncology Drug Development to Minimize Toxicity and Maximize Benefit to Patients

This review highlights strategies to integrate dose optimization into premarketing drug development and discusses the underlying statistical principles. Poor dose optimization can have negative consequences for patients, most commonly because of toxicity, including poor quality of life, reduced effectiveness because of inability of patients to stay on current therapy or receive subsequent therapy because of toxicities, and difficulty in developing combination regimens. We reviewed US Food and Drug Administration initial approvals (2019-2021) of small molecules and antibody-drug conjugates for oncologic indications to determine the proportion with a recommended dosage at the maximum tolerated dose or the maximal administered dose, to characterize the use of randomized evaluations of multiple dosages in dose selection, to describe the frequency of dose modifications at the recommended dosage, and to identify case examples that highlight key principles for premarket dose optimization during drug development. Herein, we highlight major principles for dose optimization and review examples of recent US Food and Drug Administration approvals that illustrate how investigation of dose- and exposure-response relationships and use of randomized dose trials can support dose optimization. Although there has been some progress, dose optimization through randomized dose evaluation in oncology trials is not routinely conducted. Dose optimization is essential to ensure that patients receive therapies which maximize efficacy while minimizing toxicity.

Oncology↗

DOE OSTI2025

Designing an Optimal Sensor Network via Minimizing Information Loss

Optimal experimental design is a classic topic in statistics, with many well-studied problems, applications, and solutions. The design problem we study is the placement of sensors to monitor spatiotemporal processes, explicitly accounting for the temporal dimension in our modeling and optimization. We observe that recent advancements in computational sciences often yield large datasets based on physics-based simulations, which are rarely leveraged in experimental design. We introduce a novel model-based sensor placement criterion, along with a highly-efficient optimization algorithm, which integrates physics-based simulations and Bayesian experimental design principles to identify sensor networks that “minimize information loss” from simulated data. Our technique relies on sparse variational inference and (separable) Gauss-Markov priors, and thus may adapt many techniques from Bayesian experimental design. We validate our method through a case study monitoring air temperature in Phoenix, Arizona, using state-of-the-art physics-based simulations. Our results show our framework to be superior to random or quasi-random sampling, particularly with a limited number of sensors. We conclude by discussing practical considerations and implications of our framework, including more complex modeling tools and real-world deployments.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Integrative illustration of a JCVI-syn3A minimal cell

Abstract Data from genomics, proteomics, structural biology and cryo-electron microscopy are integrated into a structural illustration of a cross section through an entire JCVI-syn3.0 minimal cell. The illustration is designed with several goals: to inspire excitement in science, to depict the underlying scientific results accurately, and to be feasible in traditional media. Design choices to achieve these goals include reduction of visual complexity with simplified representations, use of orthographic projection to retain scale relationships, and an approach to color that highlights functional compartments of the cell. Given that this simple cell provides an attractive laboratory for exploring the central processes needed for life, several functional narratives are included in the illustration, including division of the cell and the first depiction of an entire cellular proteome. The illustration lays the foundation for 3D molecular modeling of this cell.

Goodsell, David S.↗

DOE OSTI2021

Minimizing Energy Use of Mixed-Fleet Public Transit for Fixed-Route Service

Affordable public transit services are crucial for communities since they enable residents to access employment, education, and other services. Unfortunately, transit services that provide wide coverage tend to suffer from relatively low utilization, which results in high fuel usage per passenger per mile, leading to high operating costs and environmental impact. Electric vehicles (EVs) can reduce energy costs and environmental impact, but most public transit agencies have to employ them in combination with conventional, internal-combustion engine vehicles due to the high upfront costs of EVs. To make the best use of such a mixed fleet of vehicles, transit agencies need to optimize route assignments and charging schedules, which presents a challenging problem for large transit networks. We introduce a novel problem formulation to minimize fuel and electricity use by assigning vehicles to transit trips and scheduling them for charging, while serving an existing fixed-route transit schedule. We present an integer program for optimal assignment and scheduling, and we propose polynomial-time heuristic and meta-heuristic algorithms for larger networks. We evaluate our algorithms on the public transit service of Chattanooga, TN using operational data collected from transit vehicles. Our results show that the proposed algorithms are scalable and can reduce energy use and, hence, environmental impact and operational costs. For Chattanooga, the proposed algorithms can save $145,635 in energy costs and 576.7 metric tons of CO 2 emission annually.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

DOE OSTI2023

AmeriFlux US-HB4 Minim Creek Brackish Impoundment

This is the AmeriFlux version of the carbon flux data for the site US-HB4 Minim Creek Brackish Impoundment. Site Description - An impounded, brackish wetland that is a historic rice field and adjacent to a tidal creek that is managed for water level and vegetation for waterfowl habitat.

O'Halloran, Tom↗

DOE OSTI2024

AmeriFlux US-MN2 Morris: Corn-Soybean-Wheat with Cover Crops, Minimal Tillage

This is the AmeriFlux version of the carbon flux data for the site US-MN2 Morris: Corn-Soybean-Wheat with Cover Crops, Minimal Tillage. Site Description - Cropland, 3-year rotation (corn-soybean-wheat), cover crops (winter camelina and pennycress), minimum tillage, nutrient management by soil tests, uniform pest management, tile drainage

Helseth, Christina↗

DOE OSTI2017

ONLINE MINIMIZATION OF VERTICAL BEAM SIZES AT APS

In this paper, online minimization of vertical beam sizes along the APS (Advanced Photon Source) storage ring is presented. A genetic algorithm (GA) was developed and employed for the online optimization in the APS storage ring. A total of 59 families of skew quadrupole magnets were employed as knobs to adjust the coupling and the vertical dispersion in the APS storage ring. Starting from initially zero current skew quadrupoles, small vertical beam sizes along the APS storage ring were achieved in a short optimization time of one hour. The optimization results from this method are briefly compared with the one from LOCO (Linear Optics from Closed Orbits) response matrix correction.

APS↗

DOE OSTI2022

Improved Electrostatic Design of the Jefferson Lab 300 kV DC Photogun and the Minimization of Beam Deflection

An electron beam with high bunch charge and high repetition rate is required for electron cooling of the ion beam to achieve the high luminosity required for the proposed electron-ion colliders. An improved design of the 300 kV DC high voltage photogun at Jefferson Lab was incorporated toward overcoming the beam loss and space charge current limitation experienced in the original design. To reach the bunch charge goal of ~ few nC within 75 ps bunches, the existing DC high voltage photogun electrodes and anode-cathode gap were modified to increase the longitudinal electric field (Ez) at the photocathode. The anode-cathode gap was reduced to increase the Ez at the photocathode, and the anode aperture was spatially shifted with respect to the beamline longitudinal axis to minimize the beam deflection introduced by the geometric asymmetry of the inverted insulator photogun. The electrostatic design and beam dynamics simulations were performed to determine the required modification. Beam-based measurement from the modified gun confirmed the reduction of the beam deflection, which is presented in this contribution.

Mamun, M. A.↗

DOE OSTI2022

Quantum minimal surfaces from quantum error correction

We show that complementary state-specific reconstruction of logical (bulk) operators is equivalent to the existence of a quantum minimal surface prescription for physical (boundary) entropies. This significantly generalizes both sides of an equivalence previously shown by Harlow[1]; in particular, we do not require the entanglement wedge to be the same for all states in the code space. In developing this theorem, we construct an emergent bulk geometry for general quantum codes, defining ``areas'' associated to arbitrary logical subsystems, and argue that this definition is ``functionally unique.'' We also formalize a definition of bulk reconstruction that we call ``state-specific product unitary’’ reconstruction. This definition captures the quantum error correction (QEC) properties present in holographic codes and has potential independent interest as a very broad generalization of QEC; it includes most traditional versions of QEC as special cases. Our results extend to approximate codes, and even to the ``non-isometric codes'' that seem to describe the interior of a black hole at late times.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

DOE OSTI2023

Adaptive variational quantum minimally entangled typical thermal states for finite temperature simulations

Scalable quantum algorithms for the simulation of quantum many-body systems in thermal equilibrium are important for predicting properties of quantum matter at finite temperatures. Here we describe and benchmark a quantum computing version of the minimally entangled typical thermal states (METTS) algorithm for which we adopt an adaptive variational approach to perform the required quantum imaginary time evolution. The algorithm, which we name AVQMETTS, dynamically generates compact and problem-specific quantum circuits, which are suitable for noisy intermediate-scale quantum (NISQ) hardware. We benchmark AVQMETTS on statevector simulators and perform thermal energy calculations of integrable and nonintegrable quantum spin models in one and two dimensions and demonstrate an approximately linear system-size scaling of the circuit complexity. We further map out the finite-temperature phase transition line of the two-dimensional transverse field Ising model. Finally, we study the impact of noise on AVQMETTS calculations using a phenomenological noise model.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

DOE OSTI2015

Minimizing User Burden in Building Energy Analysis

Infrared (IR) imagery can provide valuable data to building energy auditors and the developers of Building Energy Models (BEM). IR by itself is not a panacea to the challenges facing energy auditors and modelers, but when combined with other techniques and Open Studio software, IR can play an important role in the minimization of the burden of creating building energy models and the diagnosing of building energy problems. While IR can be used to detect and quantify many aspects of a building’s thermal and energy performance, in Phase I we focused on a single capability: determining the R value of exterior walls. Two key attributes of using IR methods for R value determination is that IR methods measure the actual, installed performance in-situ – as opposed to relying on manufacturer or handbook values – and they can integrate performance over a wide area and thus can accurately account for thermal bridging and spatial anomalies such as “spotty” insulation installation. There is a trade between user burden and accuracy when using IR to determine a wall’s R value. The least burdensome approach is computing R values from a single IR snapshot. The most burdensome method we considered was to combine IR images with thermocouple and heat flux sensor (HFS) measurements made over the course of several days. The more effort users expend in making the measurements, the more accurate and robust the method becomes. Through a series of field tests at the ThermoAnalytics Inc. (TAI) HQ at Calumet, MI and a simulation of a 1980s era office building in Flagstaff, AZ we investigated methods to compute the R value of exterior walls using data from IR cameras, thermocouples and heat flux sensors. To compute R values the heat flux through the wall, along with temperatures on either side of the wall, must be known, modeled, or estimated – and the temperature difference through the wall should be at least 10 C. If only outdoor IR images are used in the method, the inside ambient air temperature must be estimated, and a simulation model created to predict heat fluxes and the indoor wall temperature. The accuracy of the resulting R value depends on the accuracy of the simulation and the assumptions it employs. Applying thermocouple sensors, either as iButtons or as part of a wireless sensor network, to the walls allows for the acquisition of temperatures over time. The longer the duration of the measurements, the more accurate and robust the method will be. Even with this level of measurement effort, modeling is still required to calculate the heat flux through the wall. The addition of a heat flux sensor alleviates the need for any modeling, and that results in improved accuracy. Driving the accuracy of the methods are several factors that can be quantified. How well are the wall surface temperatures known? Modeling the heat flux through walls requires knowing the details of the surrounding radiant environment and the heat transfer due to convection. How well are these boundary conditions known? Even when the heat flux is measured, error can arise when some of the measured heat is not conducted through the wall but rather goes into the thermal mass of the wall. Thermal mass effects occur when conditions and the heat flux values are fluctuating. A technique that is not robust will suffer in accuracy when these fluctuations occur. The R value determination method must be incorporated into the Open Studio process. In our proposed process, IR images and other measured sensor data are input into a module that would send R value estimates to a building library developed by team member Skidmore, Owings, & Merrill (SOM). This library of parameterized building models would use these R values along with information about the building’s age, type, and location to query the Open Studio BCL to identify the most likely constructions for walls, roof, and windows. Being based on the IMF feature of Energyplus, the SOM building library can quickly produce Energyplus models of buildings based on a limited number of user inputs.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

DOE OSTI2015

An Emergent Conductivity Relationship for Water Flow Based on Minimized Dissipation: From Landscapes to Unsaturated Soils

Optimality principles have been widely used in many areas. Based on an optimality principle that a flow field will tend toward a minimum in the energy dissipation rate, this work shows that there exists a unified form of conductivity relationship for two different flow systems: landscapes and unsaturated soils. The conductivity, the ratio of water flux to water head (energy) gradient, is a power function of water flux where the exponent value is system dependent. This relationship indicates that to minimize energy dissipation rate for a whole system, water flow has a small resistance (or a large conductivity) at a location of large water flux. Empirical evidence supports validity of the relationship for landscape and unsaturated soils (under gravity dominated conditions). Especially, it is of interest that according to this relationship, hydraulic conductivity for gravity-dominated unsaturated flow, unlike that defined in the classic theories, depends on not only capillary pressure (or saturation), but also the water flux. Use of the optimality principle allows for determining useful results that may be applicable to a broad range of areas involving highly non-linear processes and may not be possible to obtain from classic theories describing water flow processes.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2017

Minimize Solvent Oxidation with NO X Pre-Scrubbing

A novel method to remove nitrogen dioxide (NO 2 ) from the flue gas of coal-fired power plants with CO 2 capture was further developed for commercial implementation. The technology leverages the equipment and chemistry in an existing (sulfur dioxide) SO 2 polishing scrubber upstream of the main CO 2 capture unit to remove the NO 2 , preventing degradation of the CO 2 capture solvent and formation of nitrosamines (environmental hazards). The research in this report focuses on further evaluation of the chemical additives and operating conditions associated with the NO 2 removal process to define conditions for commercial scale testing and deployment. Experimental work systematically evaluated a series of potential additives to minimize the oxidation of sulfite in a representative SO 2 pre-scrubber solution (sulfite, in turn, absorbs NO 2 ). The additive combinations and concentrations were varied alongside important process conditions such as temperature, oxygen concentration, and metals present in solution to mimic the conditions expected in a commercial system. Important results of the parametric experimental work include identifying a new, potent sulfite oxidation inhibitor, revealing the importance of combining inhibitors with metal chelating agents, validation of a low-cost additive process, and development of a new semi-empirical model to represent mechanisms associated with sulfite oxidation. In addition, the experimental work reveled the impact of operating at higher temperatures (representative of a field test unit), which will guide the selection and concertation of additives as well. Engineering analysis found that waste solutions from the pre-scrubber with NO 2 additives may potentially be integrated with existing processes on site (e.g., flue gas desulfurization unit). In addition, techno-economic analysis identified potential net savings as large as $1.30/tonne CO 2 captured and quantified the potential benefit of low cost additive options actively being pursued by the development team. Finally, the experimental results and engineering analysis supported the development of a detailed field testing plan and protocol to evaluate the technology at near-commercial scale. The field test preparation included development of procedures to introduce chemical additives to an existing SO 2 polishing unit and identification of representative flue gas conditions based on a review of existing plants. These activities will have direct bearing on operation and design of commercial units.

20 FOSSIL-FUELED POWER PLANTS↗

DOE OSTI2018

Topology Optimization for Nonlinear Transient Applications Using a Minimally Invasive Approach (LDRD Final Report)

The purpose of this project was to devise, implement, and demonstrate a method that can use Sandia's existing analysis codes (e.g., Sierra, Alegra, the CTH hydro code) with minimal modification to generate objective function gradients for optimization-based design in transient, non-linear, coupled-physics applications. The approach uses a Moving Least Squares representation of the geometry to substantially reduce the number of geometric degrees of freedom. A Multiple-Program Multiple-Data computing model is then used to compute objective gradients via finite differencing. Details of the formulation and implementation are provided, and example applications are presented that show effectiveness and scalability of the approach.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2020

Bat Impact Minimization Technology: An Improved Bat Deterrent for the Full Swept Rotor Area of Any Wind Turbine

The growth in the number of wind turbine generators has led to a significant number of fatal interactions with bat species. The need to reduce the number of bat fatalities while minimizing power losses is the greatest conservation challenge for wind energy development in parts of the country, according to the American Wind Wildlife Institute. Technological solutions that can also allow turbines to operate normally would generate the maximum electricity and avoid financial losses. Bats use echolocation to perceive their surroundings by listening to features of echoes from their high frequency vocal signals reflecting from targets. In this project, Frontier Wind built on previous research demonstrating that ultrasonic noise can mask echolocation and act as a repellent or deterrent to bat flight activity. Whereas the initial study only broadcast ultrasonic transmissions from the center of the turbine, the Strike Free™ system developed for this project extended the ultrasonic coverage to the entire area swept by the turbine blades. Frontier Wind designed the system components and their integration and then tested them in the lab and in the field at Pattern Energy’s Hatchet Ridge Wind Facility near Redding, California. The researchers used an acoustic model to determine the optimal configuration of transmitters along the blades to provide sound transmission coverage across the turbine rotor swept area volume. The custom ultrasonic transmitters were designed specifically for the echolocation frequencies of the four main bat species that have been shown to have died at Hatchet Ridge, although the transmitters can be customized for different frequencies as needed in other geographic locations. The Strike Free™ system shows promise for reducing bat fatalities, and the path to commercialization requires further testing to validate and optimize performance in the field.

17 WIND ENERGY↗

DOE OSTI2020

Multimodal Data Fusion via Entropy Minimization

The use of gradient-based data-driven models to solve a range of real-world remote sensing problems can in practice be limited by the uniformity of available data. Use of data from disparate sensor types, resolutions, and qualities typically requires compromises based on assumptions that are made prior to model training and may not necessarily be optimal given over-arching objectives. For example, while deep neural networks (NNs) are state-of-the-art in a variety of target detection problems, training them typically requires either limiting the training data to a subset over which uniformity can be enforced or training independent models which subsequently require additional score fusion. The method we introduce here seeks to leverage the benefits of both approaches by allowing correlated inputs from different data sources to co-influence preferred model solutions, while maintaining flexibility over missing and mismatching data. In this work we propose a new data fusion technique for gradient updated models based on entropy minimization and experimentally validate it on a hyperspectral target detection dataset. We demonstrate superior performance compared to currently available techniques using a range of realistic data scenarios, where available data has limited spacial overlap and resolution.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2020

Improving AHU Performance by Minimizing Approach Temperature, Reducing Air Maldistribution, and Efficiently Handling Sensible and Latent Loads (Phase 1 Interim Final Technical Report)

Residential air handling units (AHUs) have stayed the same in form and efficiency for the past 30+ years, with incremental improvements made to address safety, functionality, and energy-efficiency. The purpose of this research in Phase I, Topic 9a: Next Generation Residential Air Handlers, was to improve AHU performance by minimizing heat exchanger (HX) approach temperature, reducing air maldistribution, and developing alternative system configurations which more efficiently handle sensible and latent loads. In this research Optimized Thermal Systems (OTS) developed, modeled, and evaluated multiple alternative system concepts. A dual vapor compression system separate sensible and latent cooling (SSLC) concept was studied to inform work on alternative concepts and to show best-case performance benefit. System concepts included ejector enhanced vapor compression cycles, desiccant assisted dehumidification, dual evaporator SSLC, and alternative AHU HX configurations. A dual vapor compression system showed COP improvement of 20%, however, required additional components, increased unit size, and increased cost. Two types of ejector enhanced vapor compression cycles with dual evaporators improved system COP by 9 to 11%, and reduced AHU losses by as much as 18%, with design changes limited to the AHU, no unit physical size increase, and a moderate increase to system first cost. Desiccant assisted air-conditioning required increased air flow rate resulting in higher fan power and the desiccant wheel increased sensible heat load leading to increased compressor power and reduced system COP. Dual evaporator cycles were found to degrade performance due to increased expansion losses. Optimized single slab HX designs used in place of the traditional A-coil HX led to 44–49% reduction in aluminum, 47–60% less refrigerant charge, and improved HX velocity distribution.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

DOE OSTI2019

CFD Study of Countercurrent Flow in Triply Periodic Minimal Surfaces with CO 2 BOL Solvent

Triply periodic minimal surfaces (TPMS) are promising structures for heat exchangers and ultrafiltration due to their high heat and mass transfer efficiency compared to traditional devices. Because of this, the TPMS structures are a potential candidate for building the multifunctional, intensified devices in CO 2 capture tasks. With the Lawrence Livermore National Laboratory’s (LLNL’s) additive manufacturing (AM) capability, these complicated TPMS structures can be printed in the packed column for experimental tests. To optimize the TPMS structure and enable fast prototyping, a computationally-efficient computational fluid dynamics (CFD) framework was established to explore the TPMS structure’s hydrodynamics and mass transfer performance. The established model was able to simulate the countercurrent flows by integrating the Pacific Northwest National Laboratory (PNNL) CO 2 binding organic liquids (CO 2 BOL) solvent into the TPMS structures. Three typical TPMS structures - namely, Gyroid, Schwarz-D, and Schwarz-P - were investigated using the periodic boundary set up in all three directions. Two different unit cell size (1 cm and 2 cm) geometries are tested for each type of TPMS. The solvent flow rate in this study covered a range of [0, 0.1] m/s with an initial liquid film thickness of [0.1, 1.8] mm. These simulations provided a preliminary understanding of the TPMS structure behaviors in countercurrent flow conditions. The study also related the TPMS geometry requirement to the given CO 2 BOL solvent physical property and covered reasonable packed column operation ranges.

36 MATERIALS SCIENCE↗