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At least 595 records · Page 33
All sourcesNASA NTRSDOE OSTI
DOE OSTI2018

Oxygen and helium in stripped-envelope supernovae

We present an analysis of 507 spectra of 173 stripped-envelope (SE) supernovae (SNe) discovered by the untargeted Palomar Transient Factory (PTF) and intermediate PTF (iPTF) surveys. Our sample contains 55 Type IIb SNe (SNe IIb), 45 Type Ib SNe (SNe Ib), 56 Type Ic SNe (SNe Ic), and 17 Type Ib/c SNe (SNe Ib/c). We have compared the SE SN subtypes via measurements of the pseudo-equivalent widths (pEWs) and velocities of the He I λλ5876, 7065 and O I λ7774 absorption lines. Consistent with previous work, we find that SNe Ic show higher pEWs and velocities in O I λ7774 compared to SNe IIb and Ib. The pEWs of the He I λλ5876, 7065 lines are similar in SNe Ib and IIb after maximum light. The He I λλ5876, 7065 velocities at maximum light are higher in SNe Ib compared to SNe IIb. We identify an anticorrelation between the He I λ7065 pEW and O I λ7774 velocity among SNe IIb and Ib. This can be interpreted as a continuum in the amount of He present at the time of explosion. It has been suggested that SNe Ib and Ic have similar amounts of He, and that lower mixing could be responsible for hiding He in SNe Ic. However, our data contradict this mixing hypothesis. The observed difference in the expansion rate of the ejecta around maximum light of SNe Ic (Vm = $\sqrt{2E_k/M_{ej}}$ ≈ 15 000 km s -1 ) and SNe Ib (V m ≈ 9000 km s -1 ) would imply an average He mass difference of ~1.4 M ⊙ , if the other explosion parameters are assumed to be unchanged between the SE SN subtypes. We conclude that SNe Ic do not hide He but lose He due to envelope stripping.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2014

The host galaxies of fast-ejecta core-collapse supernovae

Spectra of broad-lined Type Ic supernovae (SNe Ic-BL), the only kind of SN observed at the locations of long-duration gamma-ray bursts (LGRBs), exhibit wide features indicative of high ejecta velocities (∼0.1c). We study the host galaxies of a sample of 245 low-redshift (z < 0.2) core-collapse SNe, including 17 SNe Ic-BL, discovered by galaxy-untargeted searches, and 15 optically luminous and dust-obscured z < 1.2 LGRBs. We show that, in comparison with Sloan Digital Sky Survey galaxies having similar stellar masses, the hosts of low-redshift SNe Ic-BL and z < 1.2 LGRBs have high stellar mass and star formation rate densities. Core-collapse SNe having typical ejecta velocities, in contrast, show no preference for such galaxies. Moreover, we find that the hosts of SNe Ic-BL, unlike those of SNe Ib/Ic and SNe II, exhibit high gas velocity dispersions for their stellar masses. The patterns likely reflect variations among star-forming environments and suggest that LGRBs can be used as probes of conditions in high-redshift galaxies. They may be caused by efficient formation of massive binary progenitor systems in densely star-forming regions, or, less probably, a higher fraction of stars created with the initial masses required for an SN Ic-BL or LGRB. Finally, we show that the preference of SNe Ic-BL and LGRBs for galaxies with high stellar mass and star formation rate densities cannot be attributed to a preference for low metal abundances but must reflect the influence of a separate environmental factor.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2014

Implications of Fermi-LAT observations on the origin of IceCube neutrinos

The IceCube (IC) collaboration recently reported the detection of TeV-PeV extraterrestrial neutrinos whose origin is yet unknown. By the photon-neutrino connection in pp and pγ interactions, we use the Fermi-LAT observations to constrain the origin of the IC detected neutrinos. We find that Galactic origins, i.e., the diffuse Galactic neutrinos due to cosmic ray (CR) propagation in the Milky Way, and the neutrinos from the Galactic point sources, may not produce the IC neutrino flux, thus these neutrinos should be of extragalactic origin. Moreover, the extragalactic gamma-ray bursts (GRBs) may not account for the IC neutrino flux, the jets of active galactic nuclei may not produce the IC neutrino spectrum, but the starburst galaxies (SBGs) may be promising sources. As suggested by the consistency between the IC detected neutrino flux and the Waxman-Bahcall bound, GRBs in SBGs may be the sources of both the ultrahigh energy, ∼> 10{sup 19}eV, CRs and the 1–100 PeV CRs that produce the IC detected TeV-PeV neutrinos.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2016

The bolometric light curves and physical parameters of stripped-envelope supernovae

The optical and optical/near-infrared pseudo-bolometric light curves of 85 stripped-envelope supernovae (SNe) are constructed using a consistent method and a standard cosmology. The light curves are analysed to derive temporal characteristics and peak luminosity L p , enabling the construction of a luminosity function. Subsequently, the mass of 56 Ni synthesized in the explosion, along with the ratio of ejecta mass to ejecta kinetic energy, are found. Analysis shows that host-galaxy extinction is an important factor in accurately determining luminosity values as it is significantly greater than Galactic extinction in most cases. It is found that broad-lined SNe Ic (SNe Ic-BL) and gamma-ray burst SNe are the most luminous subtypes with a combined median L p , in erg s -1 , of log(L p ) = 43.00 compared to 42.51 for SNe Ic, 42.50 for SNe Ib, and 42.36 for SNe IIb. It is also found that SNe Ic-BL synthesize approximately twice the amount of 56 Ni compared with SNe Ic, Ib, and IIb, with median M Ni = 0.34, 0.16, 0.14, and 0.11 M ⊙ , respectively. SNe Ic-BL, and to a lesser extent SNe Ic, typically rise from L p /2 to L p more quickly than SNe Ib/IIb; consequently, their light curves are not as broad.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Measurement and Simulation of the Magnetic Fields from a 555 Timer Integrated Circuit Using a Quantum Diamond Microscope and Finite-Element Analysis

Quantum diamond microscope (QDM) magnetic field imaging is an emerging interrogation and diagnostic technique for integrated circuits (ICs). To date, the ICs measured with a QDM have been either too complex for us to predict the expected magnetic fields and benchmark the QDM performance or too simple to be relevant to the IC community. In this paper, we establish a 555 timer IC as a “model system” to optimize QDM measurement implementation, benchmark performance, and assess IC device functionality. To validate the magnetic field images taken with a QDM, we use a spice electronic circuit simulator and finite-element analysis (FEA) to model the magnetic fields from the 555 die for two functional states. Furthermore, we compare the advantages and the results of three IC-diamond measurement methods, confirm that the measured and simulated magnetic images are consistent, identify the magnetic signatures of current paths within the device, and discuss using this model system to advance QDM magnetic imaging as an IC diagnostic tool.

74 ATOMIC AND MOLECULAR PHYSICS↗
DOE OSTI2014

SU-E-T-625: Use and Choice of Ionization Chambers for the Commissioning of Flattened and Flattening-Filter-Free Photon Beams: Determination of Recombination Correction Factor (ks)

Purpose: To evaluate the recombination effect for some ionization chambers to be used for linacs commissioning for Flattened Filter (FF) and Flattening Filter Free (FFF) photon beams. Methods: A Varian TrueBeam linac with five photon beams was used: 6, 10 and 15 MV FF and 6 and 10 MV FFF. Measurements were performed in a water tank and in a plastic water phantom with different chambers: a mini-ion chamber (IC CC01, IBA), a plane-parallel ion chamber (IC PPC05, IBA) and two Farmer chambers (NE2581 and FPC05-IBA). Measurement conditions were Source- Surface Distance of 100 cm, two field sizes (10x10 and 40x40 cm2) and five depths (1cm, maximum buildup, 5cm, 10cm and 20cm). The ion recombination factors (kS), obtained from the Jaffe's plots (voltage interval 50-400 V), were evaluated at the recommended operating voltage of +300V. Results: Dose Per Pulse (DPP) at dmax was 0.4 mGy/pulse for FF beams, 1.0 mGy/pulse and 1.9 mGy/pulse for 6MV and 10 MV FFF beams respectively. For all measurement conditions, kS ranged between 0.996 and 0.999 for IC PPC05, 0.997 and 1.008 for IC CC01. For the FPC05 IBA Farmer IC, kS varied from 1.001 to 1.011 for FF beams, from 1.004 to 1.015 for 6 MV FFF and from 1.009 to 1.025 for 10 MV FFF. Whereas, for NE2581 IC the values ranged from 1.002 to 1.009 for all energy beams and measurement conditions. Conclusion: kS depends on the chamber volume and the DPP, which in turn depends on energy beam but is independent of dose rate. Ion chambers with small active volume can be reliably used for dosimetry of FF and FFF beams even without kS correction. On the contrary, for absolute dosimetry of FFF beams by Farmer ICs it is necessary to evaluate and apply the kS correction. Partially supported by Lega Italiana Lotta contro i Tumori (LILT)

07 ISOTOPE AND RADIATION SOURCES↗
DOE OSTI2014

TH-C-12A-01: Develop a Patient-Specific QA Program for Radiation Therapy with On-Board MRI

Purpose: This work describes development of the first patient-specific quality assurance (QA) program for magnetic resonance imaging guided radiation therapy (MR-IGRT). Methods: The program consisted of following components: 1) multipoint ionization chamber (IC) measurement using a 15 cm3 cubic phantom, 2) 2D stacked radiographic film dosimetry using a 30×30×20 cm3 phantom with multiple inserted ICs, 3) 3D ArcCHECK measurement with a centrally inserted IC, 4) machine delivery file verification, 5) 3D Monte-Carlo dose re-calculation with machine delivery file and phantom CT, 6) 2-head mode delivery validation in case of a malfunctioning head, and 7) independent beam-on time calculation for non-IMRT fields. Both ADCL calibrated ICs and ArcCHECK were MRI compatible. Experimental data were analyzed for the first 10 patients treated at our institution. Results: The customized phantoms allowed measuring multiple points with ICs in one delivery. Absolute IC measurements were all within 3% in all phantom geometry/shape/material combinations. Despite known uncertainty associated with film dosimetry, passing rates greater than 90% were achieved in both absolute and composite modes using TG-129 criteria. Due to the simultaneous irradiation by three radiation sources, ArcCHECK was used as a 3D relative dosimeter with angular and energy dependences uncorrected. 95–100% passing rates were obtained and the centrally inserted IC measurement assured that the overall dose normalization was within 3%. Machine delivery file verification and MC recalculated dose to the phantom results showed 98–100% passing rates, providing opportunity of moving from gamma passing rates to patient DVHbased QA metrics. Same results were obtained for the 2-head delivery mode. Manual beam-on time calculation for non-IMRT fields showed better than 5% agreement. Conclusion: We have successfully developed the first MRIGRT patient specific QA program by adopting experimental and computational dosimetry methods that were developed in the past decade for other radiation therapy modalities.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2016

SU-F-T-16: Experimental Determination of Ionization Chamber Correction Factors for In-Phantom Measurements of Reference Air Kerma Rate and Absorbed Water Dose Rate of Brachytherapy 192Ir Source

Purpose: Following the method of in-phantom measurements of reference air kerma rate (Ka) at 100cm and absorbed water dose rate (Dw1) at 1cm of high-dose-rate 192Ir brachytherapy source using 60Co absorbed-dose-to-water calibrated (ND,w,60Co) ionization chamber (IC), we experimentally determined the in-phantom correction factors (kglob) of the PTW30013 (PTW, Freiburg, Germany) IC by comparing the Monte Carlo (MC)-calculated kglob of the other PTW30016 IC. Methods: The Dw1 formalism of in-phantom measurement is: M*ND,w,60Co*(kglob)Dw1, where M is the collected charges, and (kglob)Dw1 the in-phantom Dw1 correction factor. Similarly, Ka is determined by M*ND,w,60Co*(kglob)ka, where (kglob)ka the in-phantom Ka correction factor. Two thimble ICs PTW30013 and another PTW30016 having a ND,w,60Co from the German primary standard laboratory (PTB) were simultaneously exposed to the microselectron 192Ir v2 source at 8cm in a PMMA phantom. A reference well chamber (PTW33004) with a PTB transfer Ka calibration Nka was used for comparing the in-phantom measurements to derive the experimental (kglob)ka factors. We determined the experimental (kglob)Dw1 of the PTW30013 by comparing the PTW30016 measurements with MC-calculated (kglob)Dw1. Results: Ka results of the PTW30016 based on ND,w,60Co and MC-calculated (kglob)ka differ from the well chamber results based on Nka by 1.6% and from the manufacturer by 1.0%. Experimental (kglob)ka factors for the PTW30016 and two other PTW30013 are 0.00683, 0.00681 and 0.00679, and vary <0.5% with 1mm source positioning uncertainty. Experimental (kglob)Dw1 of the PTW30013 ICs are 75.3 and 75.6, and differ by 1.6% from the conversion by dose rate constant from the AAPM report 229. Conclusion: The 1.7% difference between MC and experimental (kglob)ka for the PTW30016 IC is within the PTB 2.5% expanded uncertainty in Ka calibration standard. Using a single IC with ND,w,60Co to calibrate the brachytherapy source and dose output in external radiotherapy is feasible. MC validation of the PTW30013(kglob)Dw1 is warranted.

60 APPLIED LIFE SCIENCES↗
NASA NTRS1994

Ionospheric corrections to precise time transfer using GPS

The free electrons in the earth's ionosphere can retard the time of reception of GPS signals received at a ground station, compared to their time in free space, by many tens of nanoseconds, thus limiting the accuracy of time transfer by GPS. The amount of the ionospheric time delay is proportional to the total number of electrons encountered by the wave on its path from each GPS satellite to a receiver. This integrated number of electrons is called Total Electron Content, or TEC. Dual frequency GPS receivers designed by Allen Osborne Associates, Inc. (AOA) directly measure both the ionospheric differential group delay and the differential carrier phase advance for the two GPS frequencies and derive from this the TEC between the receiver and each GPS satellite in track. The group delay information is mainly used to provide an absolute calibration to the relative differential carrier phase, which is an extremely precise measure of relative TEC. The AOA Mini-Rogue ICS-4Z and the AOA TurboRogue ICS-4000Z receivers normally operate using the GPS P code, when available, and switch to cross-correlation signal processing when the GPS satellites are in the Anti-Spoofing (A-S) mode and the P code is encrypted. An AOA ICS-Z receiver has been operated continuously for over a year at Hanscom AFB, MA to determine the statistics of the variability of the TEC parameter using signals from up to four different directions simultaneously. The 4-channel ICS-4Z and the 8-channel ICS-4000Z, have proven capabilities to make precise, well calibrated, measurements of the ionosphere in several directions simultaneously. In addition to providing ionospheric corrections for precise time transfer via satellite, this dual frequency design allows full code and automatic codeless operation of both the differential group delay and differential carrier phase for numerous ionospheric experiments being conducted. Statistical results of the data collected from the ICS-4Z during the initial year of ionospheric time delay in the northeastern U.S., and initial results with the ICS-4000Z, will be presented.

Snow, Robert W.↗
NASA NTRS1994

SN 1994I in M51 and the nature of type Ibc supernovae

Early spectra of SN 1994I in M51 (NGC 5194) are presented along with arguments that is a member of the class of helium-poor Type Ic supernovae. The issue of H and He in the spectra of Type Ib and Ic events is reexamined with the conclusion that Type Ib eject substantially less H than even transition events like SN 1993J and that Type Ic eject substantially less He than Type Ib and their optical spectra are consistent with no H or He. Type Ic show and absorption of the Si II lambda 6355 blend that characterizes Type Ia. This feature requires only a solar abundance of Si. Some Type Ic show an absorption that is probably C II lambda 6580. IR spectra are presented of SN 1990W which show the line of He I lambda 10830. The strength of this feature and the rather slow decay of the late time light curve suggest that this event could be better classified as a Type Ib. Even if trace abundances of H are present in Type Ib and of He in Type Ic the spectral differences still imply a distinctly different evolution for the progenitors of Type Ib from Type Ic and events like SN 1993J.

Wheeler, J. C.↗
NASA NTRS2002

Pulsar Polar Cap Heating and Surface Thermal X-ray Emission: Inverse Compton Radiation Pair Fronts - 2

We investigate the production of electron-positron pairs by inverse Compton scattered (ICS) photons above a pulsar polar cap (PC) and calculate surface heating by returning positrons. This paper is a continuation of our self-consistent treatment of acceleration, pair dynamics, and electric field screening above pulsar PCs. We calculate the altitude of the inverse Compton pair-formation fronts, the flux of returning positrons, and present the heating efficiencies and X-ray luminosities. We revise pulsar death lines implying cessation of pair formation, and present them in surface magnetic field-period space. We find that virtually all known radio pulsars are capable of producing pairs by resonant and nonresonant ICS photons radiated by particles accelerated above the PC in a pure star-centered dipole field, so that our ICS pair death line coincides with empirical radio pulsar death. Our calculations show that ICS pairs are able to screen the accelerating electric field only for high PC surface temperatures and magnetic fields. We argue that such screening at ICS pair fronts occurs locally, slowing but not turning off acceleration of particles until screening can occur at a curvature radiation (CR) pair front at higher altitude. In the case where no screening occurs above the PC surface, we anticipate that the pulsar gamma-ray luminosity will be a substantial fraction of its spin-down luminosity. The X-ray luminosity resulting from PC heating by ICS pair fronts is significantly lower than the PC heating luminosity from CR pair fronts, which dominates for most pulsars. PC heating from ICS pair fronts is highest in millisecond pulsars, which cannot produce CR pairs, and may account for observed thermal X-ray components in the spectra of these old pulsars.

Harding, Alice K.↗
NASA NTRS2004

Four-Channel PC/104 MIL-STD-1553 Circuit Board

The mini bus interface card (miniBIC) is the first four-channel electronic circuit board that conforms to MIL-STD-1553 and to the electrical-footprint portion of PC/104. [MIL-STD-1553 is a military standard that encompasses a method of communication and electrical- interface requirements for digital electronic subsystems connected to a data bus. PC/104 is an industry standard for compact, stackable modules that are fully compatible (in architecture, hardware, and software) with personal-computer data- and power-bus circuitry.] Prior to the development of the miniBIC, only one- and two-channel PC/104 MIL-STD-1553 boards were available. To obtain four channels, it was necessary to include at least two boards in a PC/104 stack. In comparison with such a two-board stack, the miniBIC takes up less space, consumes less power, and is more reliable. In addition, the miniBIC includes 32 digital input/output channels. The miniBIC (see figure) contains four MIL-STD-1553B hybrid integrated circuits (ICs), four transformers, a field-programmable gate array (FPGA), and an Industry Standard Architecture (ISA) interface. Each hybrid IC includes a MILSTD-1553 dual transceiver, memory-management circuitry, processor interface logic circuitry, and 64Kx16 bits of shared static random access memory. The memory is used to configure message and data blocks. In addition, 23 16-bit registers are available for (1) configuring the hybrid IC for, and starting it in, various modes of operation; (2) reading the status of the functionality of the hybrid IC; and (3) resetting the hybrid IC to a known state. The miniBIC can operate as a remote terminal, bus controller, or bus monitor. The FPGA provides the chip-select and data-strobe signals needed for operation of the hybrid ICs. The FPGA also receives interruption signals and forwards them to the ISA bus. The ISA interface connects the address, data, and control interfaces of the hybrid ICs to the ISA backplane. Each channel is, in effect, a MIL-STD-1553 interface that can operate either independently of the others or else as a redundant version of one of the others. The transformer in each channel provides electrical isolation between the rest of the miniBIC circuitry and the bus to which that channel is connected.

Cox, Gary L.↗
NASA NTRS2014

The Host Galaxies of Fast-Ejecta Core-Collapse Supernovae

Spectra of broad-lined Type Ic supernovae (SN Ic-BL), the only kind of SN observed at the locations of long-duration gamma-ray bursts (LGRBs), exhibit wide features indicative of high ejecta velocities ((is) approximately 0.1c). We study the host galaxies of a sample of 245 low-redshift (z (is) less than 0.2) core-collapse SN, including 17 SN Ic-BL, discovered by galaxy-untargeted searches, and 15 optically luminous and dust-obscured z (is) less than 1.2 LGRBs. We show that, in comparison with SDSS galaxies having similar stellar masses, the hosts of low-redshift SN Ic- BL and z (is) is less than 1.2 LGRBs have high stellar-mass and star-formation-rate densities. Core-collapse SN having typical ejecta velocities, in contrast, show no preference for such galaxies. Moreover, we find that the hosts of SN Ic-BL, unlike those of SN Ib/Ic and SN II, exhibit high gas velocity dispersions for their stellar masses. The patterns likely reflect variations among star-forming environments, and suggest that LGRBs can be used as probes of conditions in high-redshift galaxies. They may be caused by efficient formation of massive binary progenitors systems in densely star-forming regions, or, less probably, a higher fraction of stars created with the initial masses required for a SN Ic-BL or LGRB. Finally, we show that the preference of SN Ic-BL and LGRBs for galaxies with high stellar-mass and star-formation-rate densities cannot be attributed to a preference for low metal abundances but must reflect the influence of a separate environmental factor.

collapse↗
DOE OSTI2020

Integrating Energy Efficiency Strategies with Industrialized Construction for Our Clean Energy Future: Preprint

NREL’s Industrialized Construction Innovation Team has developed an ambitious plan to accelerate the integration of energy efficiency (EE) strategies with Industrialized Construction (IC). The United States (U.S.) construction industry is beginning to use IC methods to build multifamily apartment buildings to address affordability and labor shortages. Apart from reducing cost of construction and delivery times, the IC method of permanent modular construction has the potential to facilitate the integration of a wide range of EE strategies and advanced controls into such buildings. While there may be unintended EE benefits to IC such as a tighter envelope due to higher construction quality, the process has not been leveraged specifically to enhance EE. NREL aims to claim this missed opportunity and integrate IC benefits with EE as well as advanced controls, distributed energy resources, and grid-friendly design strategies. The paper proposes an ‘IC Assessment Framework’ to achieve affordable zero-energy modular multifamily buildings. Through the selection criteria of Design for Manufacturing and Assembly, the framework aims to distill a broad range of proven EE strategies for site-built into a set of strategies that qualify as easy to integrate for off-site. The output is a Factory Information Model (FIM) that represents a process-based digital twin to enable advanced time-and-motion study, plugs into open source building energy modeling platform (EnergyPlus), and serves as a vital tool facilitating wider adoption of EE integration. Conclusively, the paper delineates next steps for upcoming pilots with NREL’s IC partners towards developing a transformational pathway for our Clean Energy Future.

30 DIRECT ENERGY CONVERSION↗
DOE OSTI2017

Absolute Dosimetry Model of the University of Washington Clinical Neutron Therapy System (CNTS)

The University of Washington (UW) Clinical Neutron Therapy System (CNTS) generates a fast neutron beam using 50.5 MeV protons incident on a beryllium target. The CNTS is mainly used for fast neutron therapy in the treatment of cancer but is also used for radiation effects testing and the production of rare isotopes, or isotopes with a short half-life, for medical imaging and therapy. The accelerator and treatment head is modeled using the MCNP6 Monte Carlo code to enable beam characterization (neutron and photon fluence, linear energy transfer, secondary particle production), study the behavior of neutron dosimeters and ionization chamber (IC) responses, and to conduct first principle studies of the relative biological effectiveness (RBE) of fast neutrons compared to {sup 60}Co γ-rays. Measurements of neutron dose in selected CNTS fields were made using a model-17 ion chamber (IC-17) flowing methane-based, tissue-equivalent (TE) gas. As a first approximation, we compared IC-17 measurements to the MCNP calculated dose in a thin layer of water at selected locations along the central axis of the beam. To examine the impact of the composition of the chamber fill-gas and the chamber design characteristics, we also developed a high-resolution (∼ 50 μm) MCNP model of the IC-17 from a computerized tomography (CT) scan. Initial results indicate that the dose response of the IC-17 ion chamber is up to 30% larger (smaller?) compared to the dose to water for neutrons with energies >20 MeV. Differences in chamber and water response as large as 800% occur for neutrons with kinetic energies below 1 keV. The simulations of IC-17 response (and dose to water) for CNTS fast neutron spectra match measured doses within 4.6% for all field sizes and irradiation geometries considered. This reported studies provide additional evidence establishing use of the IC-17 ion chamber model or a thin layer of water as a reasonable surrogate for CNTS fast neutron dose calculations.

61 RADIATION PROTECTION AND DOSIMETRY↗
DOE OSTI2021

Merging Fungal and Bacterial Community Profiles via an Internal Control

Integrated measurements of fungi and bacteria are critical to understand how interactions between these taxa drive key processes in ecosystems ranging from soils to animal guts. High-throughput amplicon sequencing is commonly used to census microbiomes, but the genetic markers targeted for fungi and bacteria (typically ribosomal regions) are domain-specific so profiling must be performed separately, obscuring relationships between these groups. To solve this problem, we developed a spike-in method with an internal control (IC) construct containing primer sites commonly used for bacterial and fungal taxonomic profiling. The internal control offers several advantages: estimation of absolute abundances, estimation of fungal to bacterial ratios (F:B), integration of bacterial and fungal profiles for holistic community analysis, and lower costs compared to other quantitation methods. To validate the IC as a scaling method, we compared IC-derived measures of F:B to measures from quantitative PCR (qPCR) using a commercial mock community (the ZymoBiomic Microbial Community DNA Standard II, containing two fungi and eight bacteria) and complex environmental samples. For both the mock community and the environmental samples, the IC produced F:B values that were statistically consistent with qPCR. Merging the environmental fungal and bacterial profiles based on the IC-derived F:B values revealed new relationships among samples in terms of community similarity. As a result, this IC method is the first spike-in method to employ a single construct for cross-domain amplicon sequencing, offering more reliable measurements.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2017

Evolution of Σ3n CSL boundaries in Ni-Cr-Mo alloy during aging treatment

Highlights: • Σ3{sup n} boundary distribution characteristics are changed during aging treatment at 600 °C. • The increase in fractions of Σ9 and Σ27 boundaries depends on interaction between Σ3{sup n} boundaries. • The consumption of Σ3{sub c} boundaries is modeled with migration of random HABs. • Generation mechanism of Σ3{sub ic} boundaries differs from traditional models. - Abstract: The evolution of Σ3{sup n} (n = 1,2,3) boundaries in a Ni-Cr-Mo alloy during an aging treatment at 600 °C was investigated based on electron backscatter diffraction (EBSD) measurements. Incoherent Σ3 (Σ3{sub ic}) and coherent Σ3 (Σ3{sub c}) boundaries were identified using the single-section trace analysis method. The results show that the Σ3{sup n} boundary distribution characteristics are changed and that a Pt{sub 2}Mo-type Ni{sub 2}(Cr,Mo) superlattice phase precipitates during the aging treatment. Through the analysis and comparison of the average grain diameters measured under the different conditions, the migration behaviors of both the Σ3{sub ic} boundaries and random high-angle boundaries (HABs) are found. The migration of the Σ3{sub ic} boundaries provides the probability of interaction between Σ3{sup n} boundaries. This interaction is responsible for some different types of triple junctions, the increase in Σ9 and Σ27 boundary fractions and interrupted connectivity of the network of random HABs. However, the Σ3{sub c} boundaries' consumption caused by the migration of random HABs and the difficulty of forming new Σ3{sub c} boundaries lead to the decreased fraction of Σ3{sub c} boundaries. The further discussion about the increase in the fraction of Σ3{sub ic} boundaries indicates that the generation mechanism of the Σ3{sub ic} boundaries during the aging treatment differs from the models applied to recrystallization and subsequent grain growth processes.

36 MATERIALS SCIENCE↗
DOE OSTI2023

Attentional Ptycho-Tomography (APT) for three-dimensional nanoscale X-ray imaging with minimal data acquisition and computation time

Abstract Noninvasive X-ray imaging of nanoscale three-dimensional objects, such as integrated circuits (ICs), generally requires two types of scanning: ptychographic, which is translational and returns estimates of the complex electromagnetic field through the IC; combined with a tomographic scan, which collects these complex field projections from multiple angles. Here, we present Attentional Ptycho-Tomography (APT), an approach to drastically reduce the amount of angular scanning, and thus the total acquisition time. APT is machine learning-based, utilizing axial self-Attention for Ptycho-Tomographic reconstruction. APT is trained to obtain accurate reconstructions of the ICs, despite the incompleteness of the measurements. The training process includes regularizing priors in the form of typical patterns found in IC interiors, and the physics of X-ray propagation through the IC. We show that APT with ×12 reduced angles achieves fidelity comparable to the gold standard Simultaneous Algebraic Reconstruction Technique (SART) with the original set of angles. When using the same set of reduced angles, then APT also outperforms Filtered Back Projection (FBP), Simultaneous Iterative Reconstruction Technique (SIRT) and SART. The time needed to compute the reconstruction is also reduced, because the trained neural network is a forward operation, unlike the iterative nature of these alternatives. Our experiments show that, without loss in quality, for a 4.48 × 93.2 × 3.92 µm 3 IC (≃6 × 10 8 voxels), APT reduces the total data acquisition and computation time from 67.96 h to 38 min. We expect our physics-assisted and attention-utilizing machine learning framework to be applicable to other branches of nanoscale imaging, including materials science and biological imaging.

47 OTHER INSTRUMENTATION↗