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DOE OSTI2024

Centralized Interactive Phenomics Resource: an integrated online phenomics knowledgebase for health data users

Development of clinical phenotypes from electronic health records (EHRs) can be resource intensive. Several phenotype libraries have been created to facilitate reuse of definitions. However, these platforms vary in target audience and utility. Here, we describe the development of the Centralized Interactive Phenomics Resource (CIPHER) knowledgebase, a comprehensive public-facing phenotype library, which aims to facilitate clinical and health services research. The platform was designed to collect and catalog EHR-based computable phenotype algorithms from any healthcare system, scale metadata management, facilitate phenotype discovery, and allow for integration of tools and user workflows. Phenomics experts were engaged in the development and testing of the site. The knowledgebase stores phenotype metadata using the CIPHER standard, and definitions are accessible through complex searching. Phenotypes are contributed to the knowledgebase via webform, allowing metadata validation. Data visualization tools linking to the knowledgebase enhance user interaction with content and accelerate phenotype development. The CIPHER knowledgebase was developed in the largest healthcare system in the United States and piloted with external partners. The design of the CIPHER website supports a variety of front-end tools and features to facilitate phenotype development and reuse. Health data users are encouraged to contribute their algorithms to the knowledgebase for wider dissemination to the research community, and to use the platform as a springboard for phenotyping. CIPHER is a public resource for all health data users available at https://phenomics.va.ornl.gov/ which facilitates phenotype reuse, development, and dissemination of phenotyping knowledge.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2020

The stellar mass assembly of low-redshift, massive, central galaxies in SDSS and the TNG300 simulation

ABSTRACT The stellar mass assembly of galaxies can be affected by both secular and environmental processes. In this study, for the first time, we investigate the stellar mass assembly of $\sim 90\, 000$ low-redshift, central galaxies selected from SDSS group catalogues ($M_{\rm Stellar}\gtrsim 10^{9.5}\, \mathrm{M}_{\odot }$, $M_{\rm Halo}\gtrsim 10^{12}\, \mathrm{M}_{\odot }$) as a function of both stellar mass and halo mass. We use estimates of the times at which 10, 50, and 90 per cent of the stellar mass were assembled from photometric spectral energy distribution fitting, allowing a more complete investigation than single stellar ages alone. We consider trends in both stellar mass and halo mass simultaneously, finding dependences of all assembly times on both. We find that galaxies with higher stellar masses (at constant halo mass) have on average older lookback times, similar to previous studies of galaxy assembly. We also find that galaxies at higher halo mass (at constant stellar mass) have younger lookback times, possibly due to a larger reservoir of gas for star formation. An exception to this is a subsample with high stellar-to-halo mass ratios, which are likely massive, field spirals. We compare these observed trends to those predicted by the TNG300 simulation, finding good agreement overall as a function of either stellar mass or halo mass. However, some differences in the assembly times (of up to ∼3 Gyr) appear when considering both stellar mass and halo mass simultaneously, noticeably at intermediate stellar masses (MStellar ∼ 1011 M⊙). These discrepancies are possibly linked to the quenched fraction of galaxies and the kinetic mode active galactic nucleus feedback implemented in TNG300.

Jackson, Thomas M.↗
DOE OSTI2021

The complex intracluster medium of Abell 1569 and its interaction with central radio galaxies

ABSTRACT We present the first in-depth study of X-ray emission from a nearby (z ∼ 0.0784) galaxy cluster Abell 1569 using an archival Chandra observation. A1569 consists of two unbound subclusters – a northern subcluster (A1569N) hosting a double-lobed radio galaxy 1233+169 at its centre, and a southern subcluster (A1569S) harbouring a wide-angle-tailed (WAT) radio source 1233+168. X-ray emission from A1569N and A1569S extends to a radius r ∼248 kpc and r ∼370 kpc, respectively, indicating that the two gas clumps are group-scale systems. The two subclusters have low X-ray luminosities (∼1042–43 erg s−1), average elemental abundances ∼1/4 Z⊙, low average temperatures (∼2 keV), and lack large (r ≳ 40–50 kpc) cool cores associated with the intracluster gas. We detect a pair of cavities coincident with the radio lobes of 1233+169 in A1569N. The total mechanical power associated with the cavity pair is an order of magnitude larger than the X-ray radiative loss in the cavity-occupied region, providing corroborating evidence for cavity-induced heating of the intragroup gas in A1569N. A1569S exhibits possible evidence for a small-scale cluster-subcluster merger, as indicated by its high central entropy, and the presence of local gas elongation and a density discontinuity in between the bent radio tails of 1233+168. The discontinuity is indicative of a weak merger shock with Mach Number, M ∼ 1.7. The most plausible geometry for the ongoing interaction is a head-on merger occurring between A1569S and a subcluster falling in from the west along the line bisecting the WAT tails.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

The physical connection between central stellar surface density and stellar spin in SAMI and MaNGA nearby galaxies

The stellar surface density within the inner 1 kpc (Σ 1 ) has become a popular tool for understanding the growth of galaxies and its connection with the quenching of star formation. The emerging picture suggests that building a central dense core is a necessary condition for quenching. However, it is not clear whether changes in Σ 1 trace changes in stellar kinematics and the growth of dispersion-dominated bulges. In this paper, we combine imaging from the Sloan Digital Sky Survey with stellar kinematics from the Sydney-AAO Multi-object Integral-field unit and Mapping Nearby Galaxies at Apache Point Observatory surveys to quantify the correlation between Σ 1 and the proxy for stellar spin parameter within one effective radius (λ re ) for 1599 nearby galaxies. We show that, on the star-forming main sequence and at fixed stellar mass, changes in Σ 1 are mirrored by changes in λ re . While forming stars, main-sequence galaxies remain rotationally-dominated systems, with their Σ 1 increasing but their stellar spin staying either constant or slightly increasing. The picture changes below the main sequence, where Σ 1 and λ re are no longer correlated. Passive systems show a narrower range of Σ 1 , but a wider range of λre compared to star-forming galaxies. Our results indicate that, from a structural point of view, passive galaxies are a more heterogeneous population than star-forming systems, and may have followed a variety of evolutionary paths. This also suggests that, if dispersion-dominated bulges still grow significantly at z ~ 0, this generally takes place during, or after, the quenching phase.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

Progenitors and explosion properties of supernova remnants hosting central compact objects: II. A global systematic study with a comparison to nucleosynthesis models

ABSTRACT Core-collapse explosions of massive stars leave behind neutron stars, with a known diversity that includes the ‘Central Compact Objects’ (CCOs). Typified by the neutron star discovered near the centre of the Cas A supernova remnant (SNR), CCOs have been observed to shine only in X-rays. To address their supernova progenitors, we perform a systematic study of SNRs that contain a CCO and display X-ray emission from their shock-heated ejecta. We make use of X-ray data primarily using the Chandra X-ray observatory, complemented with XMM–Newton. This study uses a systematic approach to the analysis of each SNR aimed at addressing the supernova progenitor as well as the explosion properties (energy and ambient density). After fitting for the ejecta abundances estimated from a spatially resolved spectroscopic study, we compare the data to six nucleosynthesis models making predictions on supernova ejecta yields in core-collapse explosions. We find that the explosion models commonly used by the astrophysics community do not match the ejecta yields for any of the SNRs, suggesting additional physics, for example multidimensional explosion models or updated progenitor structures, are required. Overall we find low-mass (≤25 solar masses) progenitors among the massive stars population and low-energy explosions (<1051 ergs). We discuss degeneracies in our model fitting, particularly how altering the explosion energy affects the estimate of the progenitor mass. Our systematic study highlights the need for improving on the theoretical models for nucleosynthesis predictions as well as for sensitive, high-resolution spectroscopy observations to be acquired with next generation X-ray missions.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2025

The hierarchical growth of bright central galaxies and intracluster light as traced by the magnitude gap

Using a sample of 2800 galaxy clusters identified in the Dark Energy Survey across the redshift range 0.20 < z < 0.60, we characterize the hierarchical assembly of bright central galaxies (BCGs) and the surrounding intracluster light (ICL). To quantify hierarchical formation we use the stellar mass–halo mass (SMHM) relation, comparing the halo mass, estimated via the mass–richness relation, to the stellar mass within the BCG + ICL system. Moreover, we incorporate the magnitude gap (M14), the difference in brightness between the BCG (measured within 30 kpc) and fourth brightest cluster member galaxy within 0.5 $R_{200,c}$, as a third parameter in this linear relation. The inclusion of M14, which traces BCG hierarchical growth, increases the slope and decreases the intrinsic scatter, highlighting that it is a latent variable within the BCG + ICL SMHM relation. Moreover, the correlation with M14 decreases at large radii. However, the stellar light within the BCG + ICL transition region (30 –80 kpc) most strongly correlates with halo mass and has a statistically significant correlation with M14. Since the transition region and M14 are independent measurements, the transition region may grow due to the BCG’s hierarchical formation. Additionally, as M14 and ICL result from hierarchical growth, we use a stacked sample and find that clusters with large M14 values are characterized by larger ICL and BCG + ICL fractions, which illustrates that the merger processes that build the BCG stellar mass also grow the ICL. Furthermore, this may suggest that M14 combined with the ICL fraction can identify dynamically relaxed clusters.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

Centrality determination with a forward detector in the RHIC Beam Energy Scan

Recently, Chatterjee et al [1] used a hadronic transport model to estimate the resolution with which various experimental quantities select the impact parameter of relativistic heavy ion collisions at collision energies relevant to the Beam Energy Scan (BES) program at the Relativistic Heavy Ion Collider (RHIC). Measures based on particle multiplicity at forward rapidity were found to be significantly worse than those based on midrapidity multiplicity. Using the same model, we show that a slightly more sophisticated measure greatly improves the resolution based on forward rapidity particles; this improvement persists even when the model is filtered through a realistic simulation of a recent upgrade detector to the STAR experiment. Furthermore, these results highlight the importance of optimizing centrality measures based on particles detected at forward rapidity, especially for experimental studies that search for a critical point in the QCD phase diagram. Such measurements usually focus on proton multiplicity fluctuations at midrapidity, hence selecting events based on multiplicity at midrapidity raises the possibility of nontrivial autocorrelations.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2021

Vortex rings from high energy central 𝑝 + 𝐴 collisions

Relativistic p + A collisions may produce droplets of quark gluon plasma (QGP) that quickly develop a toroidal vortex structure similar to that of an expanding smoke ring. We present viscous relativistic hydrodynamic calculations of ultra-central p + A collisions and develop an experimental observable to probe the structure, correlating the polarization and momentum of hyperons emitted from the collision. This effect is robust against changes in the definition of vorticity used to calculate the polarization. Experiments at RHIC and LHC may test the existence and strength of the vortex toroids, bringing new evidence to bear on the question of collectivity in the smallest QGP droplets.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2024

Proton and neutron density distributions at supranormal density in low- and medium-energy heavy-ion collisions. II. Central Pb + Pb collisions

This paper represents a continuation of our investigation into the limitations on total, proton, and neutron particle number densities, as well as the asymmetry of proton and neutron density distributions achievable in central heavy-ion collisions. We explore these aspects at low and medium energies within the framework of the Boltzmann-Uhlenbeck-Uehling (pBUU) transport and time-dependent Hartree-Fock (TDHF) models. Previous studies, focusing on symmetric and asymmetric collisions of Ca and Sn nuclei [1], and initial results on Pb-nuclei collisions [2], emphasized the role of the Coulomb interaction in these events. Our findings indicated that: (i) the highest total densities predicted at 𝐸 beam = 800 MeV/nucleon were on the order of ≈ 2.5⁢𝜌 0 (𝜌 0 = 0.16 fm −3 ), (ii) the proton-neutron asymmetry for maximal densities, 𝛿=(𝜌$^{max}_{n}$− 𝜌$^{max}_{p}$)/(𝜌$^{max}_{n}$+𝜌$^{max}_{p}$), did not generally exceed the asymmetry in the initial state of the collision at all beam energies and tended to decrease during the reaction, and (iii) a significant portion of this asymmetry had its microscopic origin in Coulomb forces, masking the pure nuclear contribution. These new findings, particularly relevant in the astrophysical context, are further examined in this work, focusing on the heaviest target-projectile combination 212,208 Pb accessible in an experiment. We introduce the SkT3 Skyrme force model, not previously used for the Pb system, and compare it to the SV-bas and SV-sym34 models to explore the symmetry-energy dependence of the results. Contour plots of nucleonic densities are presented, contrasting the time evolution of the density distributions in low (TDHF) and high (pBUU) models. We also present the evolution of normalized maximal proton, neutron, and total nucleon number density with increasing beam energy in the full pBUU model and the Vlasov approximation, aiming to explore the impact of correlations in the reaction. The time evolution of the proton and neutron density distributions in the plane transverse to the beam direction is illustrated at both low and high beam energy. In conclusion, our detailed examination of the Pb system in this work provides further essential evidence that the aforementioned findings (i)–(iii) are only weakly dependent on system size and a symmetry-energy model, and thus, they are of more general importance.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2023

Measurements of the Elliptic and Triangular Azimuthal Anisotropies in Central He 3 + Au , d + Au and p + Au Collisions at s N N = 200 GeV

The elliptic (v 2 ) and triangular (v 3 ) azimuthal anisotropy coefficients in central 3He + Au, d + Au, and p + Au collisions at $\sqrt{S_{NN}}$ = 200 GeV are measured as a function of transverse momentum (P T ) at midrapidity (|n| < 0.9) via the azimuthal angular correlation between two particles both at |n| < 0.9 while the v 2 (P T ) values depend on the colliding systems, the v 3 (P T ) values are system independent within the uncertainties, suggesting an influence on eccentricity from subnucleonic fluctuations in these small-sized systems. Furthermore, these results also provide stringent constraints for the hydrodynamic modeling of these systems.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2024

Universal Bound on Effective Central Charge and Its Saturation

The effective central charge (denoted by 𝑐 eff ) is a measure of entanglement through a conformal interface, while the transmission coefficient (encoded in the coefficient 𝑐 𝐿⁢𝑅 of the two-point function of the energy-momentum tensor across the interface) is a measure of energy transmission through the interface. It has been pointed out that these two are generally different. In this Letter, we propose the inequalities, 0 ≤ 𝑐 𝐿⁢𝑅 ≤ 𝑐 eff ≤ min⁡(𝑐 𝐿 ,𝑐 𝑅 ). They have the simple but important implication that the amount of energy transmission can never exceed the amount of information transmission. We verify them using the AdS/CFT correspondence, using the perturbation method, and in examples beyond holography. We also show that these inequalities are sharp by constructing a class of interfaces that saturate them.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2025

Measurement of In-Medium Jet Modification Using Direct Photon + Jet and 𝜋 0 + Jet Correlations in 𝑝 + 𝑝 and Central Au + Au Collisions at $\sqrt{s_{NN}}$ = 200 GeV

The STAR Collaboration presents measurements of the semi-inclusive distribution of charged-particle jets recoiling from energetic direct-photon (𝛾 dir ) and neutral-pion (𝜋 0 ) triggers in 𝑝 + 𝑝 and central Au + Au collisions at $\sqrt{s_{NN}}$ =2 00 GeV over a broad kinematic range, for jet resolution parameters 𝑅 = 0.2 and 0.5. Medium-induced jet yield suppression is observed to be larger for 𝑅 = 0.2 than for 0.5, reflecting the angular range of jet energy redistribution due to quenching. The predictions of model calculations incorporating jet quenching are not fully consistent with the observations. Furthermore, these results provide new insight into the physical origins of jet quenching.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2023

Structural basis of the amidase ClbL central to the biosynthesis of the genotoxin colibactin

Colibactin is a genotoxic natural product produced by select commensal bacteria in the human gut microbiota. The compound is a bis-electrophile that is predicted to form interstrand DNA cross-links in target cells, leading to double-strand DNA breaks. The biosynthesis of colibactin is carried out by a mixed NRPS–PKS assembly line with several noncanonical features. An amidase, ClbL, plays a key role in the pathway, catalyzing the final step in the formation of the pseudodimeric scaffold. ClbL couples α-aminoketone and β-ketothioester intermediates attached to separate carrier domains on the NRPS–PKS assembly. Here, the 1.9 Å resolution structure of ClbL is reported, providing a structural basis for this key step in the colibactin biosynthetic pathway. The structure reveals an open hydrophobic active site surrounded by flexible loops, and comparison with homologous amidases supports its unusual function and predicts macromolecular interactions with pathway carrier-protein substrates. Modeling protein–protein interactions supports a predicted molecular basis for enzyme–carrier domain interactions. Overall, the work provides structural insight into this unique enzyme that is central to the biosynthesis of colibactin.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Quench Analysis of EIC Central Detector (ePIC) Solenoid Magnet (MARCO)

The 2.0 T superconducting solenoid magnet (MARCO) being designed to be built for the EIC central detector (ePIC). Here, the magnet consists of three set of coil in a vacuum impregnated coil pack. Each coil pack consists of a total 554 turns winding wrapped with 6 layers of winding per coil. The coil case assembly is cooled by supercritical helium at 4.6 K. This manuscript presents quench analysis carried out on the magnet system along with the conductor stability. For the normal operation the magnet at 4.6 K and at normal operating current, the quench evaluation is carried out at 4.7 K for design assessment. The quench analysis carried out using commercial multi-physics FEA tool along an equivalent single coil quench model and the requirements for the magnet protection is also presented.

Ghoshal, Probir K. [Thomas Jefferson National Acce↗
DOE OSTI2026

Capacities of Entanglement Distribution From a Central Source

Distribution of entanglement is an essential task in quantum information processing and the realization of quantum networks. In our work, we theoretically investigate the scenario where a central source prepares an N -partite entangled state and transmits each entangled subsystem to one of N receivers through noisy quantum channels. The receivers are then able to perform local operations assisted by unlimited classical communication to distill target entangled states from the noisy channel output. In this operational context, we define the EPR distribution capacity and the GHZ distribution capacity of a quantum channel as the largest rates at which Einstein-Podolsky-Rosen (EPR) states and Greenberger-Horne-Zeilinger (GHZ) states can be faithfully distributed through the channel, respectively. We establish lower and upper bounds on the EPR distribution capacity by connecting it with the task of assisted entanglement distillation. We also construct an explicit protocol consisting of a combination of a quantum communication code and a classical-post-processing-assisted entanglement generation code, which yields a simple achievable lower bound for generic channels. As applications of these results, we give an exact expression for the EPR distribution capacity over two erasure channels and bounds on the EPR distribution capacity over two generalized amplitude damping channels. We also bound the GHZ distribution capacity, which results in an exact characterization of the GHZ distribution capacity when the most noisy channel is a dephasing channel.

42 ENGINEERING↗
DOE OSTI2021

Synchronized Phasor Measurement Unit-based Central Controller for Normal and Contingent Operation of a High-Capacity HVDC Macrogrid for the Continental US

This paper presents a Synchronized Phasor Measurement Unit (PMU) based controller to support the coordination and operation of a high-capacity high-voltage direct current (HVDC) macrogrid transmission for the continental US. The proposed controller allows for optimal scheduling of each segment of the multi-terminal HVDC network under normal and contingent conditions, while considering minimum levels of frequency response requirements. The performance of the proposed controller is tested on a 100,222-bus representation of the US Eastern and Western interconnections. Results show that a centralized PMU-based controller improves the frequency nadir of the HVDC macrogrid under contingency conditions by 25.9%. Furthermore, the primary frequency response (PFR) of the HVDC macrogrid is increased by 33.4%. The performance of each interconnection under the largest credible contingency conditions is also discussed.

Mohan, Nihal↗
DOE OSTI2021

Implementation of rapid diagnostics assays for detection of histoplasmosis and cryptococcosis in central american people living with HIV

Abstract Objectives Histoplasmosis and cryptococcosis are important public health problems in people living with HIV (PLHIV) in Central America. Conventional laboratory assays, based on microscopy and culture, are not optimal for the diagnosis of either disease. However, antigen (Ag) assays are rapid and highly accurate for the diagnosis of these infections. Methods Laboratory surveillance of PLHIV was carried out in four hospitals in Panama, Honduras and Nicaragua, between 2015 and 2019. Detection of Histoplasma antigens in urine was performed by enzyme immunoassay (EIA), and Cryptococcus antigen detection in sera and cerebrospinal fluid specimens was performed by lateral flow assay (LFA). Results A total of 4,453 PLHIV with clinical suspicion of histoplasmosis ( n = 1,343) or cryptococcosis ( n = 3,110; 2,721 sera and 389 CSF) were tested. Of 1,343 patients suspected of having histoplasmosis, 269 (20%) were Histoplasma Ag positive. Of 3,110 patients tested using the Cryptococcus Ag assay, 329 (11%) were positive. Honduras reported the highest positivity rates (32% for Histoplasma Ag, and 16% for Cryptococcus Ag); Panama reported the largest number of patients testing positive using the Histoplasma Ag assay ( n = 201); and Nicaragua reported the largest number of patients testing positive using the Cryptococcus Ag assay ( n = 170). Conclusion Here, we show how the implementation of rapid diagnostics assays impacted case detection and was useful for the care of people with advanced HIV. Rapid and accurate diagnosis could reduce mortality associated with histoplasmosis and cryptococcosis in PLHIV.

Caceres, Diego H.↗
DOE OSTI2020

Numerical Investigation of a Central Fuel Property Hypothesis Under Boosted Spark-Ignition Conditions

In the present work, a central fuel property hypothesis (CFPH), which states that fuel properties are sufficient to provide an indication of a fuel’s performance irrespective of its chemical composition, was numerically investigated. In particular, the objective of the study was to determine whether Research Octane Number (RON) and Motor Octane Number (MON), as fuel properties, are sufficient to describe a fuel’s knock-limited performance under boosted spark-ignition (SI) conditions within the framework of CFPH. To this end, four TPRF-bioblendstock surrogates having different compositions but matched RON (=98) and MON (=90), were first generated using a non-linear regression model based on artificial neural network (ANN). Additionally, three unconventional bioblendstocks were included in the analysis: di-isobutylene (DIB), isobutanol, and Anisole. Skeletal reaction mechanisms were generated for the TPRF-DIB, TPRF-isobutanol, and TPRF-anisole blends from a detailed kinetic mechanism. Thereafter, numerical simulations were performed for the fuel surrogates using the skeletal mechanisms and a virtual cooperative fuel research (CFR) engine model, under a representative boosted operating condition. In the computational fluid dynamics (CFD) model, the G-equation approach was employed to track the turbulent flame front and the well-stirred reactor model combined with the multi-zone binning strategy was used to capture auto-ignition in the end-gas. In addition, laminar flame speed (LFS) was tabulated for each blend as a function of pressure, temperature, and equivalence ratio a priori, and the lookup tables were used to prescribe laminar flame speed as an input to the G-equation model. Parametric spark timing sweeps were performed for each fuel blend to determine the corresponding knock-limited spark advance (KLSA) and 50% burn point (CA50) at the respective KLSA timing. It was observed that despite same RON, MON, and engine operating conditions, the TPRF-anisole blend exhibited markedly different knock-limited performance from the other three blends. This deviation from the octane index (OI) expectation was shown to be caused by differences in laminar flame speed. However, it was found that relatively large fuel-specific differences in LFS (>20%) would have to be present to cause any appreciable deviation from the OI framework. Otherwise, RON and MON would still be robust enough to predict a fuel’s knock-limited performance.

42 ENGINEERING↗