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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 577 records · Page 32
All sourcesNASA NTRSDOE OSTI
DOE OSTI2022

The DESI N -body simulation project – I. Testing the robustness of simulations for the DESI dark time survey

ABSTRACT Analysis of large galaxy surveys requires confidence in the robustness of numerical simulation methods. The simulations are used to construct mock galaxy catalogues to validate data analysis pipelines and identify potential systematics. We compare three N-body simulation codes, abacus, gadget-2, and swift, to investigate the regimes in which their results agree. We run N-body simulations at three different mass resolutions, 6.25 × 108, 2.11 × 109, and 5.00 × 109 h−1 M⊙, matching phases to reduce the noise within the comparisons. We find systematic errors in the halo clustering between different codes are smaller than the Dark Energy Spectroscopic Instrument (DESI) statistical error for $s\ \gt\ 20\ h^{-1}$ Mpc in the correlation function in redshift space. Through the resolution comparison we find that simulations run with a mass resolution of 2.1 × 109 h−1 M⊙ are sufficiently converged for systematic effects in the halo clustering to be smaller than the DESI statistical error at scales larger than $20\ h^{-1}$ Mpc. These findings show that the simulations are robust for extracting cosmological information from large scales which is the key goal of the DESI survey. Comparing matter power spectra, we find the codes agree to within 1 per cent for k ≤ 10 h Mpc−1. We also run a comparison of three initial condition generation codes and find good agreement. In addition, we include a quasi-N-body code, FastPM, since we plan use it for certain DESI analyses. The impact of the halo definition and galaxy–halo relation will be presented in a follow-up study.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

Carbon-enhanced metal-poor star candidates from BP/RP spectra in Gaia DR3

ABSTRACT Carbon-enhanced metal-poor (CEMP) stars comprise almost a third of stars with [Fe/H] < −2, although their origins are still poorly understood. It is highly likely that one sub-class (CEMP-s stars) is tied to mass-transfer events in binary stars, while another sub-class (CEMP-no stars) are enriched by the nucleosynthetic yields of the first generations of stars. Previous studies of CEMP stars have primarily concentrated on the Galactic halo, but more recently they have also been detected in the thick disc and bulge components of the Milky Way. Gaia DR3 has provided an unprecedented sample of over 200 million low-resolution (R ≈ 50) spectra from the BP and RP photometers. Training on the CEMP catalogue from the SDSS/SEGUE database, we use XGBoost to identify the largest all-sky sample of CEMP candidate stars to date. In total, we find 58 872 CEMP star candidates, with an estimated contamination rate of 12 per cent. When comparing to literature high-resolution catalogues, we positively identify 60–68 per cent of the CEMP stars in the data, validating our results and indicating a high completeness rate. Our final catalogue of CEMP candidates spans from the inner to outer Milky Way, with distances as close as r ∼ 0.8 kpc from the Galactic centre, and as far as r > 30 kpc. Future higher resolution spectroscopic follow-up of these candidates will provide validations of their classification and enable investigations of the frequency of CEMP-s and CEMP-no stars throughout the Galaxy, to further constrain the nature of their progenitors.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2024

MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration

Specialized or secondary metabolites are small molecules of biological origin, often showing potent biological activities with applications in agriculture, engineering and medicine. Usually, the biosynthesis of these natural products is governed by sets of co-regulated and physically clustered genes known as biosynthetic gene clusters (BGCs). To share information about BGCs in a standardized and machine-readable way, the Minimum Information about a Biosynthetic Gene cluster (MIBiG) data standard and repository was initiated in 2015. Since its conception, MIBiG has been regularly updated to expand data coverage and remain up to date with innovations in natural product research. Here, we describe MIBiG version 4.0, an extensive update to the data repository and the underlying data standard. In a massive community annotation effort, 267 contributors performed 8304 edits, creating 557 new entries and modifying 590 existing entries, resulting in a new total of 3059 curated entries in MIBiG. Particular attention was paid to ensuring high data quality, with automated data validation using a newly developed custom submission portal prototype, paired with a novel peer-reviewing model. MIBiG 4.0 also takes steps towards a rolling release model and a broader involvement of the scientific community. MIBiG 4.0 is accessible online at https://mibig.secondarymetabolites.org/.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Meta-GGA performance in solids at almost GGA cost

A recent modification, r 2 SCAN, of the strongly constrained and appropriately normed (SCAN) meta-generalized gradient approximation (GGA) exchange-correlation functional mostly eliminates numerical instabilities and attendant integration grid sensitivities exhibited by SCAN. Here, we show that the successful deorbitalization of SCAN to SCAN-L (SCAN with density Laplacian dependence) carries over directly to yield r 2 SCAN-L. A major benefit is that the high iteration counts that hindered the use of SCAN-L are eliminated in r 2 SCAN-L. It therefore is a computationally much faster meta-GGA than its orbital-dependent antecedent. In this work, validation data for molecular heats of formation, bond lengths, and vibration frequencies (G3/99X, T96-R, and T82-F test sets, respectively) and on lattice constants, and cohesive energies (for 55 solids) and bulk moduli (for 40 solids) are provided. In addition, we show that the overmagnetization of bcc Fe, hcp Co, and fcc Ni persists in r 2 SCAN but does not appear in r 2 SCAN-L. Distinct from SCAN, both r 2 SCAN and r 2 SCAN-L give the correct nonmagnetic ground state for bcc V.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2022

A Weakly-Supervised, Multitask Deep Learning Framework for Shadow Mitigation in Remote Sensing Imagery

We propose a weakly-supervised, multitask framework for training a convolutional neural network to solve the problem of cloud shadow mitigation given only cloud and shadow masks as labels. The network minimizes the Wasserstein distance between shadows and their proximal sunlit neighborhoods, generating a supervisory signal directly from within the input image. We extract further utility from the shadow mask through multitask learning by introducing an auxiliary task of shadow segmentation. Our approach is advantageous since it performs mitigation in an end-to-end framework which requires only a shadowed image for inference. We apply this process to the Landsat 8 OLI SPARCS validation data set and demonstrate plausible results.

Couwenhoven, Scott↗
DOE OSTI2023

Coordinate-Based Seismic Interpolation in Irregular Land Survey: A Deep Internal Learning Approach

Physical and budget constraints often result in irregular sampling, which complicates accurate subsurface imaging. Preprocessing approaches, such as missing trace or shot interpolation, are typically employed to enhance seismic data in such cases. Recently, deep learning has been used to address the trace interpolation problem at the expense of large amounts of training data to adequately represent typical seismic events. Nonetheless, most research in this area has focused on trace reconstruction, with little attention having been devoted to shot interpolation. Furthermore, existing methods assume regularly spaced receivers/sources failing in approximating seismic data from real (irregular) surveys. This work presents a novel shot gather interpolation approach which uses a continuous coordinate-based representation of the acquired seismic wavefield parameterized by a neural network. The proposed unsupervised approach, which we call coordinate-based seismic interpolation (CoBSI), enables the prediction of specific seismic characteristics in irregular land surveys without using external data during neural network training. Importantly, experimental results on real and synthetic 3-D data validate the ability of the proposed method to estimate continuous smooth seismic events in the time-space and frequency-wavenumber domains, improving sparsity or low-rank-based interpolation methods.

58 GEOSCIENCES↗
DOE OSTI2020

An Assessment of Homogeneous Mixture Method Cavitation Models in Predicting Cavitation in Nozzle Flow

The homogeneous mixture method (HMM) is a popular class of models used in the computational prediction of cavitation. Several cavitation models have been developed for use with HMM to govern the development and destruction of vapor in a fluid system. Two models credited to Kunz and Schnerr–Sauer are studied in this paper. The goal of this work is to provide an assessment of the two cavitation submodels in their ability to predict cavitation in nozzle flow. Validation data were obtained via experiments which employ both passive cavitation detection, (PCD) via acoustic sensing and optical cavitation detection (OCD) via camera imaging. The experiments provide quantitative information on cavitation inception and qualitative information on the vapor in the nozzle. The results show that initial vapor formation is not predicted precisely but within reason. A sensitivity analysis of the models to input parameters shows that the Schnerr–Sauer method does not depend upon the estimation of nuclei size and number density. Small changes in the vapor formation rate but not the total vapor volume can be seen when weighting parameters are modified. In contrast, changes to the input parameters for the Kunz model greatly change the final total vapor volume prediction. The assessment also highlights the influence of vapor convection within the method. Finally, the analysis shows that if the fluid and nozzle walls do not support nuclei larger than 40 μm, the methods would still predict cavitation when indeed there would be none in practice.

Engineering↗
DOE OSTI2022

Network Uncertainty Quantification for Analysis of Multi-Component Systems

To impact physical mechanical system design decisions and realize the full promise of high-fidelity computational tools, simulation results must be integrated at the earliest stages of the design process. This is particularly challenging when dealing with uncertainty and optimizing for system-level performance metrics, as full-system models (often notoriously expensive and time-consuming to develop) are generally required to propagate uncertainties to system-level quantities of interest. Methods for propagating parameter and boundary condition uncertainty in networks of interconnected components hold promise for enabling design under uncertainty in real-world applications. These methods avoid the need for time consuming mesh generation of full-system geometries when changes are made to components or subassemblies. Additionally, they explicitly tie full-system model predictions to component/subassembly validation data which is valuable for qualification. These methods work by leveraging the fact that many engineered systems are inherently modular, being comprised of a hierarchy of components and subassemblies that are individually modified or replaced to define new system designs. By doing so, these methods enable rapid model development and the incorporation of uncertainty quantification earlier in the design process. The resulting formulation of the uncertainty propagation problem is iterative. We express the system model as a network of interconnected component models, which exchange solution information at component boundaries. We present a pair of approaches for propagating uncertainty in this type of decomposed system and provide implementations in the form of an open-source software library. We demonstrate these tools on a variety of applications and demonstrate the impact of problem-specific details on the performance and accuracy of the resulting UQ analysis. This work represents the most comprehensive investigation of these network uncertainty propagation methods to date.

42 ENGINEERING↗
DOE OSTI2026

Tulane virus protease as a structural surrogate for inhibitor screening of human norovirus proteases

Human norovirus (HuNoV) is a significant cause of gastroenteritis worldwide, affecting people of all age groups. There are currently no vaccines or drugs available, leaving susceptible populations vulnerable to severe or protracted illness. A HuNoV cultivation system is pivotal for screening norovirus antivirals. While the human intestinal enteroid cultivation system allows robust replication of multiple HuNoV strains, it presents technical and cost barriers. Tulane virus (TV), a surrogate for HuNoV, replicates well in monkey kidney cell lines and is closely related to norovirus in cellular biology. Here, we determined the structures of TV protease (TV-Pro) alone and in complex with rupintrivir, a picornavirus inhibitor that also inhibits HuNoV proteases (HuNoV-Pro). Our data validate TV as an efficient surrogate system for rapid screening of HuNoV protease inhibitors. The TV protease structure exhibits significant backbone similarity to the GI.1 HuNoV protease in the substrate-binding domain, with the BII-CII loop in an open conformation stabilized by hydrogen bonds as present in the GI.1 protease. Structural differences in the S2 pocket and two amino acid changes in the S4 pocket result in slightly altered P2 and P4 substrate and inhibitor conformations. Despite these differences, we confirm previous findings that the TV protease can cleave the GI.1 and GII HuNoV polyprotein substrates with high and moderate efficiency, respectively. We found that rupintrivir efficiently inhibits TV protease in vitro and inhibits TV replication in cell culture with similar efficacy in combination with P-glycoprotein efflux pump inhibitors. We conclude that TV is a valuable surrogate for HuNoV protease inhibitor screening and outline strategies to improve its compatibility as such.

crystal structures↗
DOE OSTI2024

Adapting CLUTCH methodology to multigroup TSUNAMI-3D for eigenvalue sensitivity calculations

The sensitivity of the eigenvalue to uncertainties in nuclear data and its evaluation are important for nuclear criticality safety. TSUNAMI-3D sequences within the SCALE code system offer several options to the user community for calculating eigenvalue sensitivity coefficients with multigroup (MG) and continuous energy (CE) 3D transport capabilities. TSUNAMI-3D sequences implement the adjoint-based perturbation theory with MG KENO code, the Contributon Linked eigenvalue sensitivity/Uncertainty estimation via Track length importance CHaracterization (CLUTCH) method with CE KENO code, and the Iterated Fission Probability (IFP) method with CE KENO and Shift codes. Each method has benefits and limitations depending on the problem that is run. The work presented here aims to adapt the CLUTCH method, which enables the Contributon method's mesh-free, memory-efficient approach for calculating adjoint-weighted tallies for sensitivity calculations, to the MG TSUNAMI-3D sequence. This application would eliminate the explicit adjoint KENO calculation, as well as the memory-consuming mesh flux moment tallies required by the conventional MG TSUNAMI-3D. Smaller memory footprints in the CLUTCH methodology and relatively shorter runtimes in MG KENO transport can make MG TSUNAMI-3D a viable method for some complex problems. Moreover, this adaptation allows MG sensitivity calculations with Shift, ORNL's next-generation high-performance Monte Carlo transport code, which currently does not offer any sensitivity capabilities with MG particle transport simulations. Initial implementation of the new MG TSUNAMI-3D sequence and its preliminary results with a selected critical benchmark experiment in the Verified, Archived Library of Inputs and Data (VALID) are presented in this study.

KENO↗
DOE OSTI2024

Clearance Tracker

The manual process of managing security clearance was cumbersome and inefficient, involving the emailing of a fillable PDF from person to person. There was no visibility into the progress of a clearance submission. Clearance Tracker provides an automated workflow with data validation and notifications to manage the clearance process. The automated workflow routes notifications to individuals when their input is required. All participants can track the progress of clearance requests.

Short, RickyD↗
DOE OSTI2020

Two-Stream Multi-Channel Convolutional Neural Network for Multi-Lane Traffic Speed Prediction Considering Traffic Volume Impact

Traffic speed prediction is a critically important component of intelligent transportation systems. Recently, with the rapid development of deep learning and transportation data science, a growing body of new traffic speed prediction models have been designed that achieved high accuracy and large-scale prediction. However, existing studies have two major limitations. First, they predict aggregated traffic speed rather than lane-level traffic speed; second, most studies ignore the impact of other traffic flow parameters in speed prediction. To address these issues, the authors propose a two-stream multi-channel convolutional neural network (TM-CNN) model for multi-lane traffic speed prediction considering traffic volume impact. In this model, the authors first introduce a new data conversion method that converts raw traffic speed data and volume data into spatial–temporal multi-channel matrices. Then the authors carefully design a two-stream deep neural network to effectively learn the features and correlations between individual lanes, in the spatial–temporal dimensions, and between speed and volume. Accordingly, a new loss function that considers the volume impact in speed prediction is developed. A case study using 1-year data validates the TM-CNN model and demonstrates its superiority. This paper contributes to two research areas: (1) traffic speed prediction, and (2) multi-lane traffic flow study.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2020

Application of the Rossi-alpha method to simulations of HEU and organic scintillators

The International Criticality Safety Benchmark Evaluation Project (ICSBEP) Handbook contains thousands of high-quality benchmark measurements that include detailed descriptions of experiment designs and exhaustive accounting of uncertainties. These benchmarks are used extensively by the criticality safety and nuclear data communities. A subcritical benchmark involving bare, highly enriched uranium (HEU) has yet to be accepted to the handbook. The Measurement of Uranium Subcritical and Critical (MUSiC) was proposed to address this gap. MUSiC will be performed at the National Criticality Experiments Research Center (NCERC) and will leverage bare HEU hemisphere shells that can be assembled in a variety of configurations. The measurement has the following key benefits: it will be the first set of fast, subcritical measurements of HEU to be submitted to ICSBEP; ten configurations will be measured spanning from nearly no multiplication to critical (e.g., it is a measurement of similar systems with different re activities); measurements of an all-HEU system will be of value for nuclear data validation, providing results that assist in determining biases in both measurements and simulations. A variety of detector systems will be used including a Neutron Multiplicity Array Detector (NoMAD) system (similar to the MC-15), four small volume 0.635 cm (#8960;) × 7.59 cm 3He detectors (ideal for measuring prompt neutron decay constants due to their fast recovery speed), and an array of eight 5.08 cm (#8960;) × 5.08 cm EJ-309 organic scintillator detectors. The focus of this work is the simulation of the subcritical MUSiC configurations including the EJ-309 detectors and the application of the Rossi-α method. The EJ-309 organic scintillator detector array is a new detection system that will be deployed at NCERC. Organic scintillators are ideal for measurements of fast, subcritical systems due to their short time response on the order of nanoseconds.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2022

Performance of the Initial Implementation of the Shift Monte Carlo Code in SCALE 6.3

The Shift Monte Carlo code will be introduced in SCALE 6.3 as an alternative to the KENO V.a, KENO-VI, and Monaco codes. Calculations were performed to establish the performance of Shift for criticality safety analyses within the criticality safety analyses sequence (CSAS) based on models in the Verified, Archived Library of Inputs and Data (VALID). This test suite contains over 600 critical experiment models covering a broad range of fissile materials and neutron energy spectra. The comparisons presented include calculated k eff values and runtime performance for serial calculations and a selection of parallel calculations. Comparisons are presented for multigroup (MG) and continuous-energy (CE) calculations for KENO V.a and KENO-VI models. Results generated with a beta version of SCALE 6.3 indicate excellent agreement in k eff values between KENO and Shift. The largest differences in the average k eff value calculated for the 15 categories of KENO V.a models are 0.00020 ± 0.00011 Δ k for MG calculations and 0.00011 ± 0.00005 Δ k for CE calculations. Similar comparisons in three categories using KENO-VI result in the largest differences for MG calculations: as 0.00004 ± 0.00003 Δ k , and -0.00002 ± 0.00003 Δ k for CE. The preliminary results also indicate that Shift is faster than KENO on a per particle basis, especially for fast spectrum systems. The uncertainty per history is also higher, however, so the Monte Carlo figure of merit is higher for KENO for thermal and intermediate spectrum systems. As expected, Shift generally has better speedup than KENO for parallel calculations, regardless of neutron energy spectrum.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2024

The Completion of Surrogate Testing for Low-Temperature TEX and a Look Towards the Future

To address the mounting need for below room temperature nuclear data validation, the Low-Temperature Thermal Epithermal eXperiments (LT-TEX) have been designed. Validation of low-temperature neutron cross sections is necessary to verify any operation at temperatures below room temperature which is typically observed in environments far from the equator. For example, a fissile material transportation truck may routinely observe ambient temperatures down to -40°C, which is the lower temperature bound of the normal conditions of transportation defined in the United States Title 10 Code of Federal Regulations §71.71c2. Additionally, sub-room temperature benchmarks can validate newly produced cross sections, that include novel thermal scattering laws, from North Carolina State University.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2023

A single inactivating amino acid change in the SARS-CoV-2 NSP3 Mac1 domain attenuates viral replication in vivo

Despite unprecedented efforts, our therapeutic arsenal against SARS-CoV-2 remains limited. The conserved macrodomain 1 (Mac1) in NSP3 is an enzyme exhibiting ADP-ribosylhydrolase activity and a possible drug target. To determine the role of Mac1 catalytic activity in viral replication, we generated recombinant viruses and replicons encoding a catalytically inactive NSP3 Mac1 domain by mutating a critical asparagine in the active site. While substitution to alanine (N40A) reduced catalytic activity by ~10-fold, mutations to aspartic acid (N40D) reduced activity by ~100-fold relative to wild-type. Importantly, the N40A mutation rendered Mac1 unstable in vitro and lowered expression levels in bacterial and mammalian cells. When incorporated into SARS-CoV-2 molecular clones, the N40D mutant only modestly affected viral fitness in immortalized cell lines, but reduced viral replication in human airway organoids by 10-fold. In mice, the N40D mutant replicated at >1000-fold lower levels compared to the wild-type virus while inducing a robust interferon response; all animals infected with the mutant virus survived infection. Our data validate the critical role of SARS-CoV-2 NSP3 Mac1 catalytic activity in viral replication and as a promising therapeutic target to develop antivirals.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2023

Dissolved Oxygen and Temperature Data from the Hyporheic Zone of the East River Watershed July 2017 to October 2018

Dissolved oxygen (DO) is critical for aquatic ecosystems. Our focus is on the long-term DO dynamics in hyporheic zone of rivers, which are a function of both transport (hydrologic exchange between river and hyporheic zone) and uptake by biogeochemical reactions or respiration. The study site is the alpine East River watershed in Colorado, USA, meander A downstream from the pump house. Opti O2 probes were deployed in the water column and directly within the river-bed at 10, 20, and 35 cm depth (38°55'23.38"N, 106°57'4.21"W, 9046.88m) to monitor DO and temperature. A continuous data stream from July 24, 2017 to Oct 24, 2018 was autonomously telemetered to the cloud. This 14-month DO and temperature time series were obtained without any servicing for maintenance or data downloads; additionally the ability to remotely verify probe performance during field deployment was essential to confirm data validity during winter freeze-in and hydrological/weather events, such as spring melt and summer monsoons. We investigate the variations in dissolved oxygen dynamics of this snow-pack dominated watershed during a comparatively low flow water year (2018) and a relatively normal water year (2017), enabled by distinctive, in-situ, high frequency (∆t = 5min) sensors that provided a continuous time-series from the undisturbed study site over multiple seasons.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

Factors That Influence Variability in Stress-Drop Measurements Using Spectral Decomposition and Spectral-Ratio Methods for the 2019 Ridgecrest Earthquake Sequence

Stress drop is a fundamental parameter related to earthquake source physics, but is hard to measure accurately. To better understand how different factors influence stress-drop measurements, we compare two different methods using the Ridgecrest stress-drop validation data set: spectral decomposition (SD) and spectral ratio (SR), each with different processing options. Here, we also examine the influence of spectral complexity on source parameter measurement. Applying the SD method, we find that frequency bandwidth and time-window length could influence spectral magnitude calibration, while depth-dependent attenuation is important to correctly map stress-drop variations. For the SR method, we find that the selected source model has limited influence on the measurements; however, the Boatwright model tends to produce smaller standard deviation and larger magnitude dependence than the Brune model. Variance reduction threshold, frequency bandwidth, and time-window length, if chosen within an appropriate parameter range, have limited influence on source parameter measurement. For both methods, wave type, attenuation correction, and spectral complexity strongly influence the result. The scale factor that quantifies the magnitude dependence of stress drop show large variations with different processing options, and earthquakes with complex source spectra deviating from the Brune-type source models tend to have larger scale factor than earthquakes without complexity. Based on these detailed comparisons, we make a few specific suggestions for data processing workflows that could help future studies of source parameters and interpretations.

58 GEOSCIENCES↗