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At least 577 records · Page 32

Real-time PCR assays that detect genes for botulinum neurotoxin A–G subtypes

The role of Real-Time PCR assays for surveillance and rapid screening for pathogens is garnering more and more attention because of its versatility and ease of adoption. The goal of this study was to design, test, and evaluate Real-Time TaqMan PCR assays for the detection of botulinum neurotoxin (bont/A-G) genes from currently recognized BoNT subtypes. Assays were computationally designed and then laboratory tested for sensitivity and specificity using DNA preparations containing bont genes from 82 target toxin subtypes, including nine bivalent toxin types; 31 strains representing other clostridial species; and an extensive panel that consisted of DNA from a diverse set of prokaryotic (bacterial) and eukaryotic (fungal, protozoan, plant, and animal) species. In addition to laboratory testing, the assays were computationally evaluated using in silico analysis for their ability to detect bont gene sequences from recently identified toxin subtypes. Seventeen specific assays (two for each of the bont/C, bont/D, bont/E, and bont/G subtypes and three for each of the bont/A, bont/B, and bont/F subtypes) were designed and evaluated for their ability to detect bont genes encoding multiple subtypes from all seven serotypes. These assays could provide an additional tool for the detection of botulinum neurotoxins in clinical, environmental and food samples that can complement other existing methods used in clinical diagnostics, regulatory, public health, and research laboratories.

59 BASIC BIOLOGICAL SCIENCES↗

Drive System Enhancement in the NASA Lewis Research Center Supersonic Wind Tunnels

An overview of NASA Lewis' Aeropropulsion Wind Tunnel Productivity Improvements was presented at the 19th AIAA Advanced Measurement & Ground Testing Technology Conference. Since that time Lewis has implemented subsonic operation in their 10- by 10-Foot Supersonic Wind Tunnel as had been proven viable in the 8- by 6 and 9- by 15-Foot Wind Tunnel Complex and discussed at the aforementioned conference. In addition, two more years of data have been gathered to help quantify the true productivity increases in these facilities attributable to the drive system and operational improvements. This paper was invited for presentation at the 20th Advanced Measurement and Ground Testing Conference to discuss and quantify the productivity improvements in the 10- by 10 SWT since the implementation of less than full complement motor operation. An update on the increased productivity at the 8- by 6 and 9- by 15-Foot facility due to drive system enhancements will also be presented.

Becks, Edward A.↗

Device Performance of Emerging Photovoltaic Materials (Version 1)

Abstract Emerging photovoltaics (PVs) focus on a variety of applications complementing large scale electricity generation. Organic, dye‐sensitized, and some perovskite solar cells are considered in building integration, greenhouses, wearable, and indoor applications, thereby motivating research on flexible, transparent, semitransparent, and multi‐junction PVs. Nevertheless, it can be very time consuming to find or develop an up‐to‐date overview of the state‐of‐the‐art performance for these systems and applications. Two important resources for recording research cells efficiencies are the National Renewable Energy Laboratory chart and the efficiency tables compiled biannually by Martin Green and colleagues. Both publications provide an effective coverage over the established technologies, bridging research and industry. An alternative approach is proposed here summarizing the best reports in the diverse research subjects for emerging PVs. Best performance parameters are provided as a function of the photovoltaic bandgap energy for each technology and application, and are put into perspective using, e.g., the Shockley–Queisser limit. In all cases, the reported data correspond to published and/or properly described certified results, with enough details provided for prospective data reproduction. Additionally, the stability test energy yield is included as an analysis parameter among state‐of‐the‐art emerging PVs.

36 MATERIALS SCIENCE↗

Observation of Variations in Condensed Carbon Morphology Dependent on Composition B Detonation Conditions

Carbon particulates generated during detonation depend upon high explosive type, composition, and detonation conditions. Although explosive composition greatly affects particulates, the focus of this work is on how detonation geometries that induce much higher temperatures and pressures in the high explosive lead to differing particulate morphologies. In this study, two geometries were used: Detonations were initiated in Composition B cylinders at one end in conventional detonations and initiated at both ends to produce colliding detonations. Each of these detonations was observed on the sub-μs timescale using fast radiography capturing images of the front moving through the cylinder, and colliding detonation fronts in real-time. These imaging experiments were complemented with time-resolved small-angle x-ray scattering (SAXS) experiments that were able to observe and determine the varying condensed carbon morphologies at different locations and times in each detonation. The detonations could be timed in such a way that the spatial and temporal dependence of the carbon morphology could be superimposed onto radiography images collected at the same point in time. The complementary approach is able to show that the carbon condensates are much larger when formed in the elevated temperature and pressure conditions near the location of colliding detonation fronts. Thermochemical modeling suggests that these larger particulates form either in the diamond phase or on the liquidus line of the carbon phase diagram. The increase in size observed by SAXS may correlate well with the increased residence time deeply in the diamond phase. Finally, these particulates can be described as nano-sized phases with some surface texture or otherwise near-surface intra-particle heterogeneity.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Essential amino acids in the Plant-Conserved and Class-Specific Regions of cellulose synthases

The Plant-Conserved Region (P-CR) and the Class-Specific Region (CSR) are two plant-unique sequences in the catalytic core of cellulose synthases (CESAs) for which specific functions have not been established. Here, we used site-directed mutagenesis to replace amino acids and motifs within these sequences predicted to be essential for assembly and function of CESAs. We developed an in vivo method to determine the ability of mutated CesA1 transgenes to complement an Arabidopsis (Arabidopsis thaliana) temperature-sensitive root-swelling1 (rsw1) mutant. Replacement of a Cys residue in the CSR, which blocks dimerization in vitro, rendered the AtCesA1 transgene unable to complement the rsw1 mutation. Examination of the CSR sequences from 33 diverse angiosperm species showed domains of high-sequence conservation in a class-specific manner but with variation in the degrees of disorder, indicating a nonredundant role of the CSR structures in different CESA isoform classes. The Cys residue essential for dimerization was not always located in domains of intrinsic disorder. Expression of AtCesA1 transgene constructs, in which Pro417 and Arg453 were substituted for Ala or Lys in the coiled-coil of the P-CR, were also unable to complement the rsw1 mutation. Despite an expected role for Arg457 in trimerization of CESA proteins, AtCesA1 transgenes with Arg457Ala mutations were able to fully restore the wild-type phenotype in rsw1. Our data support that Cys662 within the CSR and Pro417 and Arg453 within the P-CR of Arabidopsis CESA1 are essential residues for functional synthase complex formation, but our data do not support a specific role for Arg457 in trimerization in native CESA complexes.

59 BASIC BIOLOGICAL SCIENCES↗

Electronic states dressed by an out-of-plane supermodulation in the quasi-two-dimensional kagome superconductor CsV 3 Sb 5

CsV 3 Sb 5 has attracted much recent attention as the first quasi-two-dimensional (2D) kagome superconductor. While the kagome layers are 2D in nature, increasing evidence has pointed to the importance of out-of-plane correlation in this material. However, it remains unclear whether such correlation can change the fundamental electronic structure of the quasi-2D system. Here, we reveal this missing piece of information, using angle-resolved photoemission spectroscopy, complemented by scanning tunneling microscope measurements. The three-dimensional electronic structures in the high-temperature state are revealed, which agree well with density-functional theory calculations. Electron energy bands are observed in the low-temperature state that exhibit additional periodicities along the out-of-plane momentum. Furthermore, these results reveal a direct response to the out-of-plane electronic supermodulation in the single-particle spectral function of CsV 3 Sb 5 , thus establishing an electronic platform to examine emergent phenomena beyond 2D limit in kagome superconductors.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Precipitation Trade Wind Cumuli within EUREC 4 A Field Campaign Report

The campaign Trades Cumuli Precipitation Initiation and Characterization (TCPIC) within the overarching Elucidating the Role of Clouds-Circulation Coupling in Climate EUREC 4 A campaign took place from 17 January 2020 to 20 February 2020, a total of 35 days. The campaign complemented the more extensive EUREC 4 A campaign focusing on cumulus clouds' role in the Earth's climate. TCPIC concentrated on understanding what triggers the onset and development of precipitation in trade wind cumulus clouds. The campaign requested the deployment of the U.S. Department of Energy Atmospheric Radiation Measurement (ARM) Mobile Facility (AMF) roll, pitch, and heave (RPH) stabilization platform to stabilize two radars on the Maria S. Merian research vessel (RV). The advanced remote-sensing techniques from stabilized radars characterized the entire precipitation life cycle, from the formation of larger cloud drops to precipitation evaporating on its way to the surface. Retrievals of evaporation rates, to track how rain affects the trade wind boundary layer, will be based on the zenith-pointing Doppler observations collected from the stabilized micro rain radar (MRR). Figure 1 shows the instrumentation's deployment on the RV: we installed the AMF RPH stabilization platform and the radars on the uppermost deck (peil deck) of the ship. For installing the devices, we coordinated a test phase of the equipment on the Maria S. Merian RV from 25 to 29 October 2019 in Emden harbor, Germany. In this testing phase, we set up all the connections, tested how to mount the W-band and the micro rain radars firmly on the table, and experimented with guided movements of the table to test the resistance of the whole system. Figure 1 shows the final tests conducted in Emden with the stable platform and the radars mounted.

54 ENVIRONMENTAL SCIENCES↗

Satellite To Satellite Doppler Tracking (SSDT) for mapping of the Earth's gravity field

Two SSDT schemes were evaluated: a standard, low-low, SSDT configuration, which both satellites are in basically the same low altitude nearly circular orbit and the pair is characterized by small angular separation; and a more general configuration in which the two satellites are in arbitrary orbits, so that different configurations can be comparatively analyed. The standard low-low SSDT configuration is capable of recovering 1 deg X 1 deg surface anomalies with a strength as low as 1 milligal, located on the projected satellite path, when observing from a height as large as 300 km. The Colombo scheme provides an important complement of SSDT observations, inasmuch as it is sensitive to radial velocity components, while keeping at the same performance level both measuring sensitivity and measurement resolution.

Colombo, G.↗

Spacecraft design considerations for an Inner Magnetosphere Imager mission

Imaging the Earth's magnetosphere from space will enable scientists to better understand the global shape of the inner magnetosphere, its components and processes. The proposed Inner Magnetosphere Imager (IMI) mission will obtain the first simultaneous images of the component regions of the inner magnetosphere and will enable scientists to relate these global images to internal and external influences as well as local observations. NASA's Marshall Space Flight Center (MSFC) is performing a concept definition study of the proposed mission. As currently envisioned, the baseline mission calls for an instrument complement of approximately seven imagers to be flown in an elliptical Earth orbit with an apogee of seven Earth Radii (RE). Several spacecraft concepts have been examined for the mission. The baseline concept utilizes a spinning spacecraft with a despun platform, the second uses a three-axis stabilized spacecraft with a spinning platform, while the third option splits the instruments onto two small satellites; a spinning spacecraft and a complementary three-axis stabilized spacecraft. This paper will address the mission objectives, the rationale for using proven spacecraft designs, and the preliminary concept definition study team results for all three options.

Herrmann, Melody C.↗

The Dynamics of Shock Dispersion and Interactions in Supersonic Freestreams with Counterflowing Jets

An active flow control concept using counterflowing jets to significantly modify the external flowfields and strongly weaken or disperse the shock-waves of supersonic and hypersonic vehicles to reduce the aerothermal loads and wave drag was investigated. Experiments were conducted in a trisonic blow-down wind-tunnel, complemented by pre-test computational fluid dynamics (CFD) analysis of a 2.6% scale model of Apollo capsule, with and without counterflowing jets, in Mach 3.48 and 4.0 freestreams, to assess the potential aerothermal and aerodynamic benefits of this concept. The model was instrumented with heat flux gauges, thermocouples and pressure taps, and employed five counterflowing jet nozzles (three sonic and other two supersonic with design Mach numbers of 2.44 and 2.94) and nozzle exit diameters ranging from 0.25 to 0.5 inch. Schlieren data show that at low jet flow rates of 0.05 and 0.1lb(sub m)/sec, the interactions result in a long penetration mode (LPM) jet, while the short penetration mode (SPM) jet is observed at flow rates greater than 0.1 lb(sub m)/sec., consistent with the pre-test CFD predictions. For the LPM, the jet appears to be nearly fully-expanded, resulting in a very unsteady and oscillatory flow structure in which the bow shock becomes highly dispersed such that it is no longer discernable. Higher speed camera Schlieren data reveal the shock to be dispersed into striations of compression waves, which suddenly coalesce to a weaker bow shock with a larger standoff distance as the flow rate reached a critical value. The pronounced shock dispersion could significantly impact the aerodynamic performance (L/D) and heat flux reduction of spacecraft in atmospheric entry and re-entry, and could also attenuate the entropy layer in hypersonic blunt body flows. For heat transfer, the results show significant reduction in heat flux, even giving negative heat flux for some of the SPM interactions, indicating that the flow wetting the model is cooling, instead of heating the model, which could significantly impact the requirements and design of thermal protection system. These findings strongly suggest that the application of counterflowing jets as active flow control could have strong impact on supersonic and hypersonic vehicle design and performance.

Daso, Endwell O.↗

The Ocean Colour Climate Change Initiative: II. Spatial and Temporal Homogeneity of Satellite Data Retrieval Due to Systematic Effects in Atmospheric Correction Processors

The established procedure to access the quality of atmospheric correction processors and their underlying algorithms is the comparison of satellite data products with related in-situ measurements. Although this approach addresses the accuracy of derived geophysical properties in a straight forward fashion, it is also limited in its ability to catch systematic sensor and processor dependent behaviour of satellite products along the scan-line, which might impair the usefulness of the data in spatial analyses. The Ocean Colour Climate Change Initiative (OC-CCI) aims to create an ocean colour dataset on a global scale to meet the demands of the ecosystem modelling community. The need for products with increasing spatial and temporal resolution that also show as little systematic and random errors as possible, increases. Due to cloud cover, even temporal means can be influenced by along-scanline artefacts if the observations are not balanced and effects cannot be cancelled out mutually. These effects can arise from a multitude of results which are not easily separated, if at all. Among the sources of artefacts, there are some sensor-specific calibration issues which should lead to similar responses in all processors, as well as processor-specific features which correspond with the individual choices in the algorithms. A set of methods is proposed and applied to MERIS data over two regions of interest in the North Atlantic and the South Pacific Gyre. The normalised water leaving reflectance products of four atmospheric correction processors, which have also been evaluated in match-up analysis, is analysed in order to find and interpret systematic effects across track. These results are summed up with a semi-objective ranking and are used as a complement to the match-up analysis in the decision for the best Atmospheric Correction (AC) processor. Although the need for discussion remains concerning the absolutes by which to judge an AC processor, this example demonstrates clearly, that relying on the match-up analysis alone can lead to misjudgement.

Ocean Colour↗

On observers in holographic maps

A straightforward gravitational path integral calculation implies that closed universes are trivial, described by a one dimensional Hilbert space. Two recent papers by Harlow-Usatyuk-Zhao and Abdalla-Antonini-Iliesiu-Levine have sought to ameliorate this issue by defining special rules to incorporate observers into the path integral. However, the proposed rules are different, leading to differing results for the Hilbert space dimension. Moreover, the former work offers a holographic map realized using a non-isometric code construction to complement their path integral result and clarify its physics. In this work, we propose a non-isometric code that implements the second construction, allowing thorough comparison. Our prescription may be thought of as simply removing the portion of the map that acts on the observer, while preserving the rest, creating an effective holographic boundary at the observer-environment interface. This proposal can be directly applied to general holographic maps for both open and closed universes of any dimension.

AdS-CFT correspondence↗

Quantum many-body simulations of the two-dimensional Fermi-Hubbard model in ultracold optical lattices

Understanding quantum many-body states of correlated electrons is one main theme in modern condensed-matter physics. Given that the Fermi-Hubbard model, the prototype of correlated electrons, was recently realized in ultracold optical lattices, it is highly desirable to have controlled numerical methodology to provide precise finite-temperature results upon doping to directly compare with experiments. Here, we demonstrate the exponential tensor renormalization group (XTRG) algorithm [Chen et al., Phys. Rev. X 8, 031082 (2018)], complemented by independent determinant quantum Monte Carlo, offers a powerful combination of tools for this purpose. XTRG provides full and accurate access to the density matrix and thus various spin and charge correlations, down to an unprecedented low temperature of a few percent of the tunneling energy. Finally, we observe excellent agreement with ultracold fermion measurements at both half filling and finite doping, including the sign-reversal behavior in spin correlations due to formation of magnetic polarons, and the attractive hole-doublon and repulsive hole-hole pairs that are responsible for the peculiar bunching and antibunching behaviors of the antimoments.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Magnetic properties of the double trillium lattice antiferromagnet KBaCr 2 ⁢(PO 4 ) 3

Trillium lattices formed by corner-shared triangular units are the platform for magnetic frustration in three dimensions. Herein, we report structural and magnetic properties of the Cr-based (S = 3/2) double trillium lattice material KBaCr 2 ⁢(PO 4 ) 3 studied by x-ray diffraction, dc and ac magnetization, heat capacity, thermal conductivity, and 31 P nuclear magnetic resonance (NMR) measurements complemented by density-functional band-structure calculations. Magnetization, heat capacity, and 31 P NMR measurements reveal the magnetic transition at T N⁢1 ≃ 12.5 K in zero field followed by another transition (T N⁢2 ) at low temperatures in weak applied fields. The 31 P spin-lattice relaxation rate in the ordered state follows the T 3 behavior indicative of the two-magnon Raman process. Finally, the spin lattice of KBaCr 2 ⁢(PO 4 ) 3 comprises two crystallographically nonequivalent ferromagnetic sublattices that are coupled antiferromagnetically, thus eliminating frustration in this trillium network and leading to weak ferromagnetism in the vicinity of T N⁢1 .

36 MATERIALS SCIENCE↗

Quantitative texture analysis at the WAND 2 and HIDRA diffractometers

Data collection and analysis strategies have been developed for efficient and reliable crystallographic texture measurements at two recently upgraded neutron diffractometers: the Wide Angle Neutron Diffractometer Squared (WAND 2 ) and the High Intensity Diffractometer for Residual Stress Analysis (HIDRA) at the High Flux Isotope Reactor located at Oak Ridge National Laboratory. These methods are demonstrated using measurements on a variety of textured samples, including multi-phase steel composites and polycrystalline calcite (CaCO 3 ). Reference measurements were also made at VULCAN, the engineering diffractometer located at the Spallation Neutron Source. The texture data obtained on the different instruments are in agreement, and WAND 2 is more time efficient than HIDRA. Two analysis methods were investigated, single-peak fitting to obtain individual pole figures for inversion and Rietveld texture analysis using MAUD. Here, the impact of the differences between the various textures obtained was evaluated through the calculation of diffraction elastic constants, which is one application of the texture data collected. Both instruments were found to provide texture data that are suitable for complementing other analyses, such as residual stress mapping.

47 OTHER INSTRUMENTATION↗

Virtual Refrigerant Charge Sensing Method for Next-Generation Refrigerant in Residential Heat Pumps

The charge level of refrigerant in heat pump systems significantly affects their operational performance. Virtual refrigerant charge (VRC) sensing technology has been well-established for traditional refrigerants (HFCs and HCFCs) for its low cost compared to physical sensors. However, other than traditional refrigerants, HFOs are increasingly used in next-generation heat pumps; whether these conventional VRC sensing methods remain applicable for heat pump systems utilizing next-generation refrigerants requires further investigation. To address these issues, this study develops a low-cost VRC sensing method for next-generation refrigerant heat pumps used in residential buildings. The developed algorithm is evaluated by using simulation models to evaluate the accuracy, considering an R454B heat pump with a nominal heating capacity of 51K Btu/hr (14.95 kW) as an example, and compared with those of the two reference VRC sensing algorithms. Though the developed VRC sensing algorithm and the two reference methods can accurately predict the charge level for the R454B heat pump system (with mean absolute percentage error for various cooling and heating conditions less than 7%), the developed VRC sensing algorithm uses fewer sensors and improves the overall accuracy for heating conditions by 7.1%, and the accuracy for undercharge cooling conditions 14.2%, compared with a mainstream algorithm. This technology will complement physical leakage detectors, and promote the adoption of next-generation heat pump systems, along with reducing wasted energy and maintenance costs.

Liang, Chenjiyu↗

Negative base encoding in optical linear algebra processors

In the digital multiplication by analog convolution algorithm, the bits of two encoded numbers are convolved to form the product of the two numbers in mixed binary representation; this output can be easily converted to binary. Attention is presently given to negative base encoding, treating base -2 initially, and then showing that the negative base system can be readily extended to any radix. In general, negative base encoding in optical linear algebra processors represents a more efficient technique than either sign magnitude or 2's complement encoding, when the additions of digitally encoded products are performed in parallel.

Perlee, C.↗

Precise tracking of the Magellan and Pioneer Venus orbiters by same-beam interferometry

Results of a demonstration of same-beam interferometry, the simultaneous tracking of two spacecraft in orbit about a distant planet by widely separated earth-based radio antennas, are presented with regard to the Magellan and Pioneer 12 orbiters at Venus. Signals from both spacecraft fall within the same beamwidth of the tracking antennas. The plane-of-sky position difference between spacecraft is precisely determined by double-differenced phase measurements. This data type complements line-of-sight Doppler and improves orbital accuracy by up to an order of magnitude. The predicted error is dominated by solar plasma fluctuations, and is 15.1 psec for a 5-min integration. The rms of the residuals is less than this by about 25 percent. The shape of the spectrum computed from residuals is consistent with that derived from a model of solar plasma fluctuations. Same-beam interferometry is expected to enhance tracking accuracy and efficiency for proposed multiple missions to Mars.

Border, James S.↗