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At least 577 records · Page 32

The Visibility of Earth Transits

The recent detection of planetary transits of the solar-like star HD 209458 at a distance of 47 parsecs suggest that transits can reveal the presence of Jupiter-size planetary companions in the solar neighborhood. Recent space-based transit searches have achieved photometric precision within an order of magnitude of that required to detect the much smaller transit signal of an earth-size planet around a solar-size star. Laboratory experiments in the presence of realistic noise sources have shown that CCDs can achieve photometric precision adequate to detect the 9.6 E-5 dimming, of the Sun due to a transit of the Earth. Space-based solar irradiance monitoring has shown that the intrinsic variability of the Sun would not preclude such a detection. Transits of the Sun by the Earth would be detectable by observers that reside within a narrow band of sky positions near the ecliptic plane, if the observers possess current Earth epoch levels of technology and astronomical expertise. A catalog of candidate target stars, their properties, and simulations of the photometric Earth transit signal detectability at each target is presented.

Castellano, Tim↗

SETI prototype system for NASA's Sky Survey microwave observing project - A progress report

Two complementary search strategies, a Targeted Search and a Sky Survey, are part of NASA's SETI microwave observing project scheduled to begin in October of 1992. The current progress in the development of hardware and software elements of the JPL Sky Survey data processing system are presented. While the Targeted Search stresses sensitivity allowing the detection of either continuous or pulsed signals over the 1-3 GHz frequency range, the Sky Survey gives up sensitivity to survey the 99 percent of the sky that is not covered by the Targeted Search. The Sky Survey spans a larger frequency range from 1-10 GHz. The two searches will deploy special-purpose digital signal processing equipment designed and built to automate the observing and data processing activities. A two-million channel digital wideband spectrum analyzer and a signal processor system will serve as a prototype for the SETI Sky Survey processor. The design will permit future expansion to meet the SETI requirement that the processor concurrently search for left and right circularly polarized signals.

Klein, M. J.↗

Spatiotemporal analysis identifies ABF2 and ABF3 as key hubs of endodermal response to nitrate

Nitrate is a nutrient and a potent signal that impacts global gene expression in plants. However, the regulatory factors controlling temporal and cell type–specific nitrate responses remain largely unknown. We assayed nitrate-responsive transcriptome changes in five major root cell types of the Arabidopsis thaliana root as a function of time. We found that gene-expression response to nitrate is dynamic and highly localized and predicted cell type–specific transcription factor (TF)–target interactions. Among cell types, the endodermis stands out as having the largest and most connected nitrate-regulatory gene network. ABF2 and ABF3 are major hubs for transcriptional responses in the endodermis cell layer. We experimentally validated TF–target interactions for ABF2 and ABF3 by chromatin immunoprecipitation followed by sequencing and a cell-based system to detect TF regulation genome-wide. Validated targets of ABF2 and ABF3 account for more than 50% of the nitrate-responsive transcriptome in the endodermis. Moreover, ABF2 and ABF3 are involved in nitrate-induced lateral root growth. Our approach offers an unprecedented spatiotemporal resolution of the root response to nitrate and identifies important components of cell-specific gene regulatory networks.

59 BASIC BIOLOGICAL SCIENCES↗

Using Multiple Space Assests with In-Situ Measurements to Track Flooding in Thailand

Increasing numbers of space assets can enable coordinated measurements of flooding phenomena to enhance tracking of extreme events. We describe the use of space and ground measurements to target further measurements as part of a flood monitoring system in Thailand. We utilize rapidly delivered MODIS data to detect major areas of flooding and the target the Earth Observing One Advanced Land Imager sensor to acquire higher spatial resolution data. Automatic surface water extent mapping products delivered to interested parties. We are also working to extend our network to include in-situ sensing networks and additional space assets.

flooding↗

Integration of phage and yeast display platforms: A reliable and cost effective approach for binning of peptides as displayed on-phage

Hundreds of target specific peptides are routinely discovered by peptide display platforms. However, due to the high cost of peptide synthesis only a limited number of peptides are chemically made for further analysis. Here we describe an accurate and cost effective method to bin peptides on-phage based on binding region(s), without any requirement for peptide or protein synthesis. This approach, which integrates phage and yeast display platforms, requires display of target and its alanine variants on yeast. Flow cytometry was used to detect binding of peptides on-phage to the target on yeast. Once hits were identified, they were synthesized to confirm their binding region(s) by HDX (Hydrogen deuterium exchange) and crystallography. Moreover, we have successfully shown that this approach can be implemented as part of a panning process to deplete non-functional peptides. This technique can be applied to any target that can be successfully displayed on yeast; it narrows down the number of peptides requiring synthesis; and its utilization during selection results in enrichment of peptide population against defined binding regions on the target.

59 BASIC BIOLOGICAL SCIENCES↗

Targeted assemblies of cas1 suggest CRISPR-Cas’s response to soil warming

Abstract There is an increasing interest in the clustered regularly interspaced short palindromic repeats CRISPR-associated protein (CRISPR-Cas) system to reveal potential virus–host dynamics. The universal and most conserved Cas protein, cas1 is an ideal marker to elucidate CRISPR-Cas ecology. We constructed eight Hidden Markov Models (HMMs) and assembled cas1 directly from metagenomes by a targeted-gene assembler, Xander, to improve detection capacity and resolve the diverse CRISPR-Cas systems. The eight HMMs were first validated by recovering all 17 cas1 subtypes from the simulated metagenome generated from 91 prokaryotic genomes across 11 phyla. We challenged the targeted method with 48 metagenomes from a tallgrass prairie in Central Oklahoma recovering 3394 cas1. Among those, 88 were near full length, 5 times more than in de-novo assemblies from the Oklahoma metagenomes. To validate the host assignment by cas1, the targeted-assembled cas1 was mapped to the de-novo assembled contigs. All the phylum assignments of those mapped contigs were assigned independent of CRISPR-Cas genes on the same contigs and consistent with the host taxonomies predicted by the mapped cas1. We then investigated whether 8 years of soil warming altered cas1 prevalence within the communities. A shift in microbial abundances was observed during the year with the biggest temperature differential (mean 4.16 °C above ambient). cas1 prevalence increased and even in the phyla with decreased microbial abundances over the next 3 years, suggesting increasing virus–host interactions in response to soil warming. This targeted method provides an alternative means to effectively mine cas1 from metagenomes and uncover the host communities.

54 ENVIRONMENTAL SCIENCES↗

Measurements of D–D fusion neutrons generated in nanowire array laser plasma using Timepix3 detector

Here, we present results of the neutron detection in laser plasma experiment with CD2 nanowire target. A hybrid semiconductor pixel detector Timepix3 covered with neutron converters was using for the detection neutrons. D-D fusion neutrons were detected in a plastic converter through recoiled protons. Both the energy of recoiled protons and time-of-flight of neutrons (and thus their energy) were determined. We report (2.4±1.8) × 10 7 neutrons generated for 1 J of incoming laser energy. Furthermore, we proved that Timepix3 is suitable for difficult operational conditions in laser experiments.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Extrapolation procedures in Mott electron polarimetry

In standard Mott electron polarimetry using thin gold film targets, extrapolation procedures must be used to reduce the experimentally measured asymmetries A to the values they would have for scattering from single atoms. These extrapolations involve the dependent of A on either the gold film thickness or the maximum detected electron energy loss in the target. A concentric cylindrical-electrode Mott polarimeter, has been used to study and compare these two types of extrapolations over the electron energy range 20-100 keV. The potential systematic errors which can result from such procedures are analyzed in detail, particularly with regard to the use of various fitting functions in thickness extrapolations, and the failure of perfect energy-loss discrimination to yield accurate polarizations when thick foils are used.

Gay, T. J.↗

Visible-near Infrared Spectral Indices for Mapping Mineralogy and Chemistry with OSIRIS-Rex

The primary objective of the Origins, Spectral Interpretation, Resource Identification, and Security–Regolith Explorer (OSIRIS-REx) mission is to return to Eartha pristine sample of carbonaceous material from the primitive asteroid (101955) Bennu. To support compositional mapping of Bennu as part of sample site selection and characterization, we tested 95 spectral indices on visible to near infrared laboratory reflectance data from minerals and carbonaceous meteorites. Our aim was to determine which indices reliably identify spectral features of interest. Most spectral indices had high positive detection rates when applied to spectra of pure, single-component materials. The meteorite spectra have fewer and weaker absorption features and, as a result, fewer detections with the spectral indices. Indices targeting absorptions at 0.7 and 2.7–3lm, which are attributable to hydrated minerals, were most successful for the meteorites. Based on these results, we identified a set of 17 indices that are most likely to be useful at Bennu. These indices detect olivines, pyroxenes, carbonates, water/OH-bearing minerals, serpentines, ferric minerals, and organics. Particle size and albedo are known to affect band depth but had a negligible impact on interpretive success with spectral indices. Preliminary analysis of the disk-integrated Bennu spectrum with these indices is consistent with expectations given the observed absorption near 3lm. Our study prioritizes spectral indices to be used for OSIRIS-REx spectral analysis and mapping and informs the reliability of all index-derived data products, including a science value map for sample site selection.

Hannah H. Kaplan↗

A CRISPRi-dCas9 System for Archaea and Its Use To Examine Gene Function during Nitrogen Fixation by Methanosarcina acetivorans

CRISPR-based systems are emerging as the premier method to manipulate many cellular processes. In this study, a simple and efficient CRISPR interference (CRISPRi) system for targeted gene repression in archaea was developed. The Methanosarcina acetivorans CRISPR-Cas9 system was repurposed by replacing Cas9 with the catalytically dead Cas9 (dCas9) to generate a CRISPRi-dCas9 system for targeted gene repression. To test the utility of the system, genes involved in nitrogen (N2) fixation were targeted for dCas9-mediated repression. First, the nif operon (nifHI 1 I 2 DKEN) that encodes molybdenum nitrogenase was targeted by separate guide RNAs (gRNAs), one targeting the promoter and the other targeting nifD. Remarkably, growth of M. acetivorans with N 2 was abolished by dCas9-mediated repression of the nif operon with each gRNA. The abundance of nif transcripts was >90% reduced in both strains expressing the gRNAs, and NifD was not detected in cell lysate. Next, we targeted NifB, which is required for nitrogenase cofactor biogenesis. Expression of a gRNA targeting the coding sequence of NifB decreased nifB transcript abundance >85% and impaired but did not abolish growth of M. acetivorans with N2. Finally, to ascertain the ability to study gene regulation using CRISPRi-dCas9, nrpR1, encoding a subunit of the repressor of the nif operon, was targeted. The nrpR1 repression strain grew normally with N2 but had increased nif operon transcript abundance, consistent with NrpR1 acting as a repressor. Furthermore, these results highlight the utility of the system, whereby a single gRNA when expressed with dCas9 can block transcription of targeted genes and operons in M. acetivorans.

59 BASIC BIOLOGICAL SCIENCES↗

Visible–near infrared spectral indices for mapping mineralogy and chemistry with OSIRIS-REx

The primary objective of the Origins, Spectral Interpretation, Resource Identification, and Security–Regolith Explorer (OSIRIS-REx) mission is to return to Earth a pristine sample of carbonaceous material from the primitive asteroid (101955) Bennu. To support compositional mapping of Bennu as part of sample site selection and characterization, we tested 95 spectral indices on visible to near infrared laboratory reflectance data from minerals and carbonaceous meteorites. Our aim was to determine which indices reliably identify spectral features of interest. Most spectral indices had high positive detection rates when applied to spectra of pure, single-component materials. The meteorite spectra have fewer and weaker absorption features and, as a result, fewer detections with the spectral indices. Indices targeting absorptions at 0.7 and 2.7–3 µm, which are attributable to hydrated minerals, were most successful for the meteorites. Based on these results, we identified a set of 17 indices that are most likely to be useful at Bennu. These indices detect olivines, pyroxenes, carbonates, water/OH-bearing minerals, serpentines, ferric minerals, and organics. Particle size and albedo are known to affect band depth but had a negligible impact on interpretive success with spectral indices. Preliminary analysis of the disk-integrated Bennu spectrum with these indices is consistent with expectations given the observed absorption near 3 lm. Our study prioritizes spectral indices to be used for OSIRIS-REx spectral analysis and mapping and informs the reliability of all index-derived data products, including a science value map for sample site selection.

Hannah H. Kaplan↗

Visible - Near Infrared Spectral Indices for Mapping Mineralogy and Chemistry with OSIRIS-REx

The primary objective of the Origins, Spectral Interpretation, Resource Identification, SecurityRegolith Explorer (OSIRIS-REx) mission is to return to Earth a pristine sample of carbonaceous material from the primitive asteroid (101955) Bennu. To support compositional mapping as part of sample site selection and characterization, we tested 95 spectral parameters on visible to near infrared laboratory reflectance data of minerals and carbonaceous meteorites to find which of these parameters reliably identified spectral features of interest. Most spectral parameters had high positive detection rates when used on spectra of pure, single component materials. The meteorite spectra have fewer and weaker absorption features and, as a result, fewer detections with the spectral parameters. Parameters targeting absorptions at 0.7 and 2.7 – 3 µm, which arise due to hydrated minerals, were most successful for the meteorites. Based on these results, we have identified a set of 17 parameters that are most likely to be useful at Bennu and spectral analogs. These parameters detect olivines, pyroxenes, carbonates, water/OH-bearing minerals, serpentines, ferric minerals, and organics. Particle size and albedo are known to affect band depth but had a negligible impact on parameter accuracy. The effect of instrument-like noise added to the laboratory spectra can result in more false positive detections, but these exhibit large errors. Our study has determined the prioritization of spectral parameters used for OSIRISREx spectral analysis and mapping and informs the reliability of all parameter-derived data products.

Hannah H Kaplan↗

Sub-Eddington Supermassive Black Hole Activity in Fornax Early-type Galaxies

We characterize the incidence and intensity of low-level supermassive black hole activity within the Fornax cluster, through X-ray observations of the nuclei of 29 quiescent early-type galaxies. Using the Chandra X-ray Telescope, we target 17 galaxies from the Hubble Space Telescope Fornax Cluster Survey, down to a uniform (3σ) limiting X-ray luminosity threshold of 5 x 10^(38) erg/s, which we combine with deeper, archival observations for an additional 12 galaxies. A nuclear X-ray point source is detected in 11 out of 29 targets. After accounting for the low-mass X-ray binary contamination to the nuclear X-ray signal, the X-ray active fraction is measured at 26.6% ± 9.6%. The results from this analysis are compared to similar investigations targeting quiescent early types in the Virgo cluster, as well as the field. After correcting for the different mass distributions, the measured Fornax active fraction is less than the field fraction, at more than 3σ, confirming that the funneling of gas to the nuclear regions of cluster members is inhibited compared to those galaxies in the field. At the same time, we find no statistically significant difference between Fornax and Virgo galaxies, with only marginal evidence for a lower active fraction in Fornax (1σ); if real, owing to Fornaxʼs higher galaxy number density, this could indicate that galaxy–galaxy interactions are more effective at gas removal than galaxy-gas effects.

Nathan Lee↗

Microbial identification by immunohybridization assay of artificial RNA labels

Ribosomal RNA (rRNA) and engineered stable artificial RNAs (aRNAs) are frequently used to monitor bacteria in complex ecosystems. In this work, we describe a solid-phase immunocapture hybridization assay that can be used with low molecular weight RNA targets. A biotinylated DNA probe is efficiently hybridized in solution with the target RNA, and the DNA-RNA hybrids are captured on streptavidin-coated plates and quantified using a DNA-RNA heteroduplex-specific antibody conjugated to alkaline phosphatase. The assay was shown to be specific for both 5S rRNA and low molecular weight (LMW) artificial RNAs and highly sensitive, allowing detection of as little as 5.2 ng (0.15 pmol) in the case of 5S rRNA. Target RNAs were readily detected even in the presence of excess nontarget RNA. Detection using DNA probes as small as 17 bases targeting a repetitive artificial RNA sequence in an engineered RNA was more efficient than the detection of a unique sequence.

Non-NASA Center↗

Detecting ionizing radiation using halide perovskite semiconductors processed through solution and alternative methods

We report the direct detection of high-energy radiation such as X-rays and.-rays by semiconductors at room temperature is a challenging proposition that requires remarkably pure and nearly perfect crystals. The emergence of metal halide perovskites, defect-tolerant semiconductors, is reviving hope for new materials in this field after an almost 20 year hiatus. Metal halide perovskites, which combine exceptional optoelectronic properties, versatile chemistry and simple synthesis, are challenging traditional approaches for the development of novel semiconductors for detecting hard radiation. We discuss the relevant physical properties, promising materials, fabrication techniques and device architectures for high-performance, low-cost detectors by targeting next-generation semiconductors for radiation detection. We also present a perspective on the impact of such advances in future medical imaging applications.

36 MATERIALS SCIENCE↗

Solar wind physics

A double-chambered gas proportional counter was constructed to detect and identify solar wind ions after acceleration by a high voltage power supply. It was determined that the best method of detecting deuterium in the solar wind is to use a tritium target as proposed for IMP H and J. The feasibility of detecting H(+) and He(+) ions of interstellar origin is considered. A program is described to carry out ground-based astronomical observations of faint, diffuse optical emission lines from interstellar gas. Hydrogen and oxygen emission lines from galactic sources were detected and the galactic and geocoronal H alpha and beta lines were clearly resolved.

Source record↗

Phase II and III Solid Waste Management Unit Assessment and Confirmatory Sampling Report for Per- and Polyfluorinated Alkyl Substances, Potential Release Location 237, Kennedy Space Center, Florida

Per- and polyfluoroalkyl substances (PFAS) Phase II and III Solid Waste Management Unit (SWMU) Assessment (SA) and Confirmatory Sampling (CS) were conducted at the John F. Kennedy Space Center (KSC), Potential Release Location (PRL) 237, located in Merritt Island, Brevard County, Florida for the National Aeronautics and Space Administration (NASA) under Contract 80KSC019D0010/80KSC019F0289. A Phase I SA and CS Report was previously submitted that identified 33 locations of concern (LOCs) at KSC associated with the storage, use, or release of materials containing PFAS. The objectives of the Phase II and III SA and CS were to: - Complete site and source characterization of identified LOCs; - Identify areas of potential concern (AOPCs) where past or present activities may have resulted in a release of PFAS to the environment; - Qualitatively characterize migration potential of released PFAS to environmental media (primarily soil, groundwater, surface water, and sediment); and - Identify potential receptors for exposure to PFAS-impacted environmental media. Surface water samples were collected from LOCs/AOPCs and locations on the KSC periphery during PFAS CS Phases I, II and III. Including duplicate samples, 143 environmental samples were analyzed for 14 PFAS compounds and 104 environmental samples were analyzed for 18 PFAS compounds. Ten of the analytes on the 14 compound list were detected at least once in surface water at KSC, with a wide range in magnitude of detections. The State of Florida has surface water screening levels (SWSLs) for perfluorooctanoic acid (PFOA) and perfluorooctanesulfonic acid (PFOS) in surface water, both for human and ecological receptors. The human health screening levels are lower than the ecological ones and are used in this report. PFOA was not detected in surface water at concentrations exceeding the SWSL at any LOC or Area of Potential Concern (AOPC). PFOS was detected in surface water at concentrations exceeding the SWSL at 28 LOCs/AOPCs, plus 42 locations on the KSC periphery. The data suggest a wide distribution of PFAS, particularly PFOS, in surface water but the sources of surface water contamination are not yet adequately understood. Sediment samples were collected during Phases II and III but not Phase I. Including duplicate samples, 104 environmental samples were analyzed for 14 PFAS compounds and 10 environmental samples were analyzed for 18 PFAS compounds. Twelve compounds were detected in sediment at KSC, with a wide range in magnitude of detections. There are currently no screening levels or cleanup target levels (CTLs) for sediment. The need to delineate and further characterize PFAS in sediment will be evaluated for those sites that move forward into Site Assessment. Groundwater samples were collected via DPT from LOCs/AOPCs and locations on the KSC periphery during PFAS CS Phases I, II and III. Including duplicate samples, 812 environmental DPT groundwater samples were analyzed for 14 PFAS compounds and 247 environmental samples were analyzed for 18 PFAS compounds. Twelve of the 14 compounds were detected in groundwater at KSC, with a wide range in magnitude of detections. The State of Florida has provisional groundwater cleanup target levels (GCTLs) for PFOA, PFOS and the additive concentration of PFOA+PFOS. PFOA was detected in groundwater at concentrations exceeding its provisional GCTL at 16 LOCs/AOPCs, with no exceedances on the KSC periphery. PFOS was detected in groundwater at concentrations exceeding its provisional GCTL at 30 LOCs/AOPCs, plus two locations on the KSC periphery. PFOA+PFOS was detected in groundwater at concentrations exceeding the provisional GCTL at 31 LOCs/AOPCs, plus two locations on the KSC periphery. Soil samples were collected during Phases II and III but not Phase I. Including duplicate samples, 292 environmental samples were analyzed for 14 PFAS compounds and 80 environmental samples were analyzed for 18 PFAS compounds. Fourteen compounds were detected in soil at KSC, with a wide range in magnitude of detections. The State of Florida has provisional soil cleanup target levels (SCTLs) for PFOA and PFOS. There were no PFOA results above its provisional SCTL. There was one LOC with a result above the provisional SCTL for residential settings. Recommendations are presented for each LOC and AOPC.

PFAS↗

Plateau de Bure High-z Blue Sequence Survey 2 (PHIBSS2): Search for Secondary Sources, CO Luminosity Functions in the Field, and the Evolution of Molecular Gas Density through Cosmic Time

We report on the results of a search for serendipitous sources in CO emission in 110 cubes targeting CO(2 − 1), CO(3 − 2), and CO(6 − 5) at z ∼ 1–2 from the second Plateau de Bure High-z Blue Sequence Survey (PHIBSS2). The PHIBSS2 observations were part of a 4 yr legacy program at the IRAM Plateau de Bure Interferometer aimed at studying early galaxy evolution from the perspective of molecular gas reservoirs. We present a catalog of 67 candidate secondary sources from this search, with 45 of the 110 data cubes showing sources in addition to the primary target that appear to be field detections, unrelated to the central sources. This catalog includes redshifts, line widths, and fluxes, as well as an estimation of their reliability based on their false-positive probability. We perform a search in the 3D Hubble Space Telescope/CANDELS catalogs for the secondary CO detections and tentatively find that ∼64% of these have optical counterparts, which we use to constrain their redshifts. Finally, we use our catalog of candidate CO detections to derive the CO(2 − 1), CO(3 − 2), CO(4 − 3), CO(5 − 4), and CO(6 − 5) luminosity functions over a range of redshifts, as well as the molecular gas mass density evolution. Despite the different methodology, these results are in very good agreement with previous observational constraints derived from blind searches in deep fields. They provide an example of the type of “deep-field” science that can be carried out with targeted observations.

79 ASTRONOMY AND ASTROPHYSICS↗