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At least 577 records · Page 32

Origin of multifractality in solar wind turbulence: the role of current sheets

ABSTRACT In this work, a multifractal framework is proposed to investigate the effects of current sheets in solar wind turbulence. By using multifractal detrended fluctuation analysis coupled with surrogate methods and volatility, two solar wind magnetic field time series are investigated, one with current sheets and one without current sheets. Despite the lack of extreme-events intermittent bursts in the current sheet-free series, both series are shown to be strongly multifractal, although the current sheet-free series displays an almost linear behaviour for the scaling exponent of structure functions. Long-range correlations are shown to be the main source of multifractality for the series without current sheets, while a combination of heavy-tail distribution and non-linear correlations is responsible for multifractality in the series with current sheets. The multifractality in both time series is formally shown to be associated with an energy-cascade process using the p-model.

Gomes, Leonardo F.↗

Caveat mutator: alanine substitutions for conserved amino acids in RNA ligase elicit unexpected rearrangements of the active site for lysine adenylylation

Naegleria gruberi RNA ligase (NgrRnl) exemplifies the Rnl5 family of adenosine triphosphate (ATP)-dependent polynucleotide ligases that seal 3'-OH RNA strands in the context of 3'-OH/5'-PO 4 nicked duplexes. Like all classic ligases, NgrRnl forms a covalent lysyl–AMP intermediate. A two-metal mechanism of lysine adenylylation was established via a crystal structure of the NgrRnl•ATP•(Mn 2+ ) 2 Michaelis complex. Here we conducted an alanine scan of active site constituents that engage the ATP phosphates and the metal cofactors. We then determined crystal structures of ligase-defective NgrRnl-Ala mutants in complexes with ATP/Mn 2+ . The unexpected findings were that mutations K170A, E227A, K326A and R149A (none of which impacted overall enzyme structure) triggered adverse secondary changes in the active site entailing dislocations of the ATP phosphates, altered contacts to ATP, and variations in the numbers and positions of the metal ions that perverted the active sites into off-pathway states incompatible with lysine adenylylation. Each alanine mutation elicited a distinctive off-pathway distortion of the ligase active site. Our results illuminate a surprising plasticity of the ligase active site in its interactions with ATP and metals. More broadly, they underscore a valuable caveat when interpreting mutational data in the course of enzyme structure-function studies.

59 BASIC BIOLOGICAL SCIENCES↗

MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters

Abstract With an ever-increasing amount of (meta)genomic data being deposited in sequence databases, (meta)genome mining for natural product biosynthetic pathways occupies a critical role in the discovery of novel pharmaceutical drugs, crop protection agents and biomaterials. The genes that encode these pathways are often organised into biosynthetic gene clusters (BGCs). In 2015, we defined the Minimum Information about a Biosynthetic Gene cluster (MIBiG): a standardised data format that describes the minimally required information to uniquely characterise a BGC. We simultaneously constructed an accompanying online database of BGCs, which has since been widely used by the community as a reference dataset for BGCs and was expanded to 2021 entries in 2019 (MIBiG 2.0). Here, we describe MIBiG 3.0, a database update comprising large-scale validation and re-annotation of existing entries and 661 new entries. Particular attention was paid to the annotation of compound structures and biological activities, as well as protein domain selectivities. Together, these new features keep the database up-to-date, and will provide new opportunities for the scientific community to use its freely available data, e.g. for the training of new machine learning models to predict sequence-structure-function relationships for diverse natural products. MIBiG 3.0 is accessible online at https://mibig.secondarymetabolites.org/.

59 BASIC BIOLOGICAL SCIENCES↗

Follow-up observations for IceCube-170922A: Detection of rapid near-infrared variability and intensive monitoring of TXS 0506+056

Abstract We present our follow-up observations to search for an electromagnetic counterpart of the IceCube high-energy neutrino IceCube-170922A. Monitoring observations of a likely counterpart, TXS 0506+056, are also described. First, we quickly took optical and near-infrared images of seven flat-spectrum radio sources within the IceCube error region right after the neutrino detection and found a rapid flux decline of TXS 0506+056 in Kanata/HONIR J-band data. Motivated by this discovery, intensive follow-up observations of TXS 0506+056 were continuously performed, including our monitoring imaging observations, spectroscopic observations, and polarimetric observations in optical and near-infrared wavelengths. TXS 0506+056 showed a large-amplitude (∼1.0 mag) variability in a time scale of several days or longer, although no significant variability was detected in a time scale of a day or shorter. TXS 0506+056 also showed a bluer-when-brighter trend in optical and near-infrared wavelengths. Structure functions of the variabilities were examined and indicate that TXS 0506+056 is not a special blazar in terms of optical variability. Polarization measurement results of TXS 0506+056 are also discussed.

(galaxies:) BL Lacertae objects: general↗

A century of studying plant secondary metabolism—From “what?” to “where, how, and why?”

Abstract Over the past century, early advances in understanding the identity of the chemicals that collectively form a living plant have led scientists to deeper investigations exploring where these molecules localize, how they are made, and why they are synthesized in the first place. Many small molecules are specific to the plant kingdom and have been termed plant secondary metabolites, despite the fact that they can play primary and essential roles in plant structure, development, and response to the environment. The past 100 yr have witnessed elucidation of the structure, function, localization, and biosynthesis of selected plant secondary metabolites. Nevertheless, many mysteries remain about the vast diversity of chemicals produced by plants and their roles in plant biology. From early work characterizing unpurified plant extracts, to modern integration of ‘omics technology to discover genes in metabolite biosynthesis and perception, research in plant (bio)chemistry has produced knowledge with substantial benefits for society, including human medicine and agricultural biotechnology. Here, we review the history of this work and offer suggestions for future areas of exploration. We also highlight some of the recently developed technologies that are leading to ongoing research advances.

54 ENVIRONMENTAL SCIENCES↗

Multidimensional measurements of beam single-spin asymmetries in semi-inclusive deep-inelastic charged-kaon electroproduction off protons in the valence region

Measurements of beam single-spin asymmetries in semi-inclusive deep-inelastic electron scattering (SIDIS) with positively charged kaons off protons have been performed with 10.6 and 10.2 GeV incident electron beams using the CLAS12 spectrometer at Jefferson Lab. We report an analysis of the electroproduction of positively charged kaons over a large kinematic range of fractional energy, Bjorken 𝑥, transverse momentum, and photon virtualities 𝑄 2 ranging from 1 GeV 2 up to 6 GeV 2 . This is the first published multidimensionally binned CLAS12 measurement of a kaon SIDIS single-spin asymmetry in the valence quark regime. The data provide constraints on the structure function ratio $𝐹^{sin \space𝜙}_{𝐿⁢𝑈}$⁡/$𝐹_{𝑈⁢𝑈}$, where $𝐹^{sin \space𝜙}_{𝐿⁢𝑈}$ is a quantity with a leading twist of twist-3 that can reveal novel aspects of the quark-gluon correlations within the nucleon. The impact of the data on understanding the underlying reaction mechanisms and their kinematic variation is explored using theoretical models for the different contributing twist-3 parton-distribution functions (PDFs) and fragmentation functions (FFs).

form factors↗

Constraining neutrino-nucleon form factors with charged-current scattering at the Electron-Ion Collider

Next-generation neutrino oscillation experiments such as the Deep Underground Neutrino Experiment require percent-level knowledge of neutrino-nucleon interaction cross sections. The nucleon axial form factor 𝐹 𝐴 ⁡(𝑄 2 ), parametrized by the axial mass 𝑀 𝐴 , is the dominant source of uncertainty in the quasielastic channel, and the parity-violating structure function 𝑥⁢𝐹 3 is poorly constrained on free nucleons. We propose using charged-current (CC) electron-proton scattering at the Electron-Ion Collider (EIC) to address both problems simultaneously. The measurement exploits three key features of the EIC: (1) helicity-selective electron bunches provide in situ electromagnetic background rejection; (2) a longitudinally polarized proton target enables extraction of 𝐹 𝐴 ⁡(𝑄 2 ) through the target-spin asymmetry 𝐴 𝑈⁢𝐿 ; and (3) the 𝑦-distribution leverage in CC deep inelastic scattering (DIS) separates 𝐹 2 and 𝑥⁢𝐹 3 on a free proton, without nuclear corrections. Using a Fisher information analysis at $\sqrt{𝑠}$ =141 GeV with 500 fb −1 of integrated luminosity, we project the Cramér-Rao statistical floor of 𝛿⁢𝑀 𝐴 ≈0.03 GeV (3%). Incorporating first-order realistic detector effects, such as zero-degree calorimeter acceptance, 𝑄 2 smearing (5%), and background noise from helicity subtraction, the projected sensitivity is severely background-limited due to the small signal-to-background ratio (𝑆/𝐵 ≈ 3 ×10 −4 ) in the elastic channel. Achieving competitive sensitivity (𝛿⁢𝑀 𝐴 ≈ 0.14 GeV) would require ∼10 −7 background suppression, 3 orders of magnitude beyond current projections. The CC DIS 𝑦 distribution provides subpercent extraction of 𝑥⁢𝐹$^{𝑊^{−}}_{3}$ over 0.05 < 𝑥 < 0.5, representing the most robust electroweak measurement in the near term.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Exclusive π 0 p electroproduction off protons in the resonance region at photon virtualities 0.4 GeV 2 ≤ Q 2 ≤ 1 GeV 2

The limited electroproduction process e p → e ' p ' π 0 was measured in the range of photon virtualities Q 2 = 0.4 – 1.0 GeV 2 and the invariant mass range of the p π 0 system of W = 1.1 – 1.8 GeV. These kinematics are covered in exclusive π 0 electroproduction off the proton with nearly complete angular coverage in the p π 0 center-of-mass system and with high statistical accuracy. Nearly 36 000 cross-section points were measured, and the structure functions σ T + ε σ L , σ L T , and σ T T , were extracted via fitting the φ π 0 dependence of the cross section. A Legendre polynomial expansion analysis demonstrates the sensitivity of our data to high-lying N * and Δ * resonances with M > 1.6 GeV. As part of a broad effort to determine the electrocouplings of the N * and Δ * resonances using both single- and double-pion electroproduction, this dataset is key for the reliable extraction of the high-lying resonance electrocouplings from the combined isospin analysis of the N π and π + π - p channels.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Parity-violating inelastic electron-proton scattering at low Q 2 above the resonance region

We report the measurement of the parity-violating asymmetry for the inelastic scattering of electrons from the proton, at $Q^2 = 0.082$ GeV$^2$ and $ W = 2.23$ GeV, above the resonance region. The result $A_{\rm Inel} = - 13.5 \pm 2.0 ({\rm stat}) \pm 3.9 ({\rm syst})$ ppm agrees with theoretical calculations, and helps to validate the modeling of the $\gamma Z$ interference structure functions $F_1^{\gamma Z}$ and $F_2^{\gamma Z}$ used in those calculations, which are also used for determination of the two-boson exchange box diagram ($\Box_{\gamma Z}$) contribution to parity-violating elastic scattering measurements. A positive parity-violating asymmetry for inclusive $\pi^-$ production was observed, as well as positive beam-normal single-spin asymmetry for scattered electrons and a negative beam-normal single-spin asymmetry for inclusive $\pi^-$ production.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Exclusive π - electroproduction off the neutron in deuterium in the resonance region

We report new results for the exclusive and quasi-free cross sections off neutrons bound in deuterium y v n(p) →p π - (p) are presented over a wide final state hadron angle range with a kinematic coverage of the invariant mass (W) up to 1.825 GeV and the virtual photon four-momentum transfer squared (Q 2 ) from 0.4 to 1.0 GeV 2 . The exclusive structure functions have been extracted and their Legendre moments were obtained. Final-state-interaction contributions have been kinematically separated from the extracted quasi-free cross sections off bound neutrons solely based on the analysis of the experimental data. These new results will serve as long-awaited input for phenomenological analyses to extract the Q 2 evolution of previously unavailable n → N* electroexcitation amplitudes and to improve state-of-the-art models of neutrino scattering off nuclei by augmenting the already available results from free protons.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Chiral effective field theory calculation of neutrino reactions in warm neutron-rich matter

Neutrino scattering and absorption rates of relevance to supernovae and neutron star mergers are obtained from nuclear matter dynamical structure functions that encode many-body effects from nuclear mean fields and correlations. In this study, we employ nuclear interactions from chiral effective field theory to calculate the density, spin, isospin, and spin-isospin response functions of warm β-equilibrium nuclear matter. We include corrections to the single-particle energies in the mean field approximation as well as vertex corrections resummed in the random phase approximation (RPA), including both direct and exchange diagrams. We find that correlations included through the RPA redistribute the strength of the response to higher energy for neutrino absorption and lower energy for antineutrino absorption. This tends to suppress the absorption rate of electron neutrinos across all relevant energy scales. In contrast, the inclusion of RPA correlations enhances the electron antineutrino absorption rate at low energy and suppresses the rate at high energy. These effects are especially important at high-density and in the vicinity of the neutrino decoupling region. Implications for heavy element nucleosynthesis, electromagnetic signatures of compact object mergers, supernova dynamics, and neutrino detection from galactic supernovae are discussed briefly.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

High precision measurements of α 𝑠 at the future EIC

Here, we present a projection study for the first moments of the inclusive spin structure function ∫𝑔 1 ⁡(𝑥,𝑄 2 )𝑑𝑥 for the proton and neutron from simulated doubly-polarized $\overrightarrow{e}$ $⁢\overrightarrow{p}$ and $\overrightarrow{e}$ − $\overrightarrow{^{3}He}$ collision data expected from the Electron Ion Collider. For detection and extraction of the neutron spin asymmetries from $\overrightarrow{e}$ − $\overrightarrow{^{3}He}$ collisions, we used the double-tagging method which significantly reduces the uncertainty over the traditional inclusive method. Using the Bjorken Sum Rule, the projected results allow us to determine that the QCD coupling at the 𝑍-pole 𝛼 𝑠 ⁡(𝑀$^2_{Z^0}$) can be measured with a relative precision of 1.3%. This underscores the significance of the EIC for achieving precision determinations of 𝛼 𝑠 .

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Role of the chiral anomaly in polarized deeply inelastic scattering. III. Wess-Zumino-Witten contributions and chiral Ward identities for finite quark mass

We extend our prior results on the worldline computation of the axial vector-vector-vector (AVV) triangle anomaly in polarized deeply inelastic scattering (DIS) to the finite mass case by computing in addition the pseudoscalar-vector-vector (PVV) triangle graph. For the well-studied QED case, we show explicitly how the off-forward AVV pole exactly cancels an identical PVV pole. We then demonstrate the dramatic difference in QCD due to the chiral condensate, which qualitatively modifies anomalous Ward identities. As in the massless case, the anomaly pole in QCD is canceled by the dynamics of a primordial isosinglet pseudoscalar η ¯ -meson, whose Wess-Zumino-Witten coupling to the topological charge density shifts the pole to the physical η ′ mass, with the finite quark mass contribution differing by O ( 10 % ) from the Witten-Veneziano formula. We obtain a compact analytic expression for the finite mass corrections to Shore and Veneziano’s result that the proton’s net quark helicity Δ Σ ∝ χ QCD ′ | m = 0 ( 0 ) , the forward slope of the topological susceptibility in the chiral limit, and show they are of the order of a few percentages. Our prior prediction that the polarized DIS structure function g 1 is quenched by sphaleronlike topological transitions at small x is unaffected by quark mass effects. Our results illustrate how worldline computations of anomalous processes, in synergy with lattice computations and nonet chiral perturbation theory, can uncover novel nonperturbative features of QCD at the Electron-Ion Collider. Published by the American Physical Society 2025

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Statistical properties of homogeneous and isotropic turbulence in He II measured via particle tracking velocimetry

Despite being a quantum two-fluid system, superfluid helium-4 (He II) is observed to behave similarly to classical fluids when a flow is generated by mechanical forcing. This similarity has brought up the feasibility of utilizing He II for high Reynolds number classical turbulence research, considering the small kinematic viscosity of He II. However, it has been suggested that the nonclassical dissipation mechanism in He II at small scales may alter its turbulent statistics and intermittency. In this work, we report our study of a nearly homogeneous and isotropic turbulence (HIT) generated by a towed grid in He II. We measure the velocity field using particle tracking velocimetry with solidified deuterium particles as the tracers. By correlating the velocities measured simultaneously on different particle trajectories or at different times along the same particle trajectory, we are able to conduct both Eulerian and Lagrangian flow analyses. Spatial velocity structure functions obtained through the Eulerian analysis show scaling behaviors in the inertial subrange similar to that for classical HIT but with enhanced intermittency. The Lagrangian analysis allows us to examine the flow statistics down to below the dissipation length scale. Interestingly, abnormal deviations from the classical scaling behaviors are observed in this regime. Lastly, we discuss how these deviations may relate to the motion of quantized vortices in the superfluid component in He II.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Spin-dependent dark matter scattering in quasi-two-dimensional magnets

We study the prospects of detecting dark matter coupled to the spin of the electron, such that it may scatter and excite magnons—collective excitations of electronic spins. We show that materials exhibiting long-range magnetic order where the spins are coupled only along a plane may act as directional dark matter detectors. These quasi-two-dimensional materials possess anisotropic dispersion relations and structure functions which induce a sidereal modulation in the excitation rate. We calculate the expected signal rate for some candidate (anti)ferromagnets, demonstrating a possible route to the direct detection of spin-dependent dark matter in the keV to MeV mass range.

Dark matter direct detection↗

Integrated sample-handling and mounting system for fixed-target serial synchrotron crystallography

Serial synchrotron crystallography (SSX) is enabling the efficient use of small crystals for structure–function studies of biomolecules and for drug discovery. An integrated SSX system has been developed comprising ultralow background-scatter sample holders suitable for room and cryogenic temperature crystallographic data collection, a sample-loading station and a humid `gloveless' glovebox. The sample holders incorporate thin-film supports with a variety of designs optimized for different crystal-loading challenges. These holders facilitate the dispersion of crystals and the removal of excess liquid, can be cooled at extremely high rates, generate little background scatter, allow data collection over >90° of oscillation without obstruction or the risk of generating saturating Bragg peaks, are compatible with existing infrastructure for high-throughput cryocrystallography and are reusable. The sample-loading station allows sample preparation and loading onto the support film, the application of time-varying suction for optimal removal of excess liquid, crystal repositioning and cryoprotection, and the application of sealing films for room-temperature data collection, all in a controlled-humidity environment. The humid glovebox allows microscope observation of the sample-loading station and crystallization trays while maintaining near-saturating humidities that further minimize the risks of sample dehydration and damage, and maximize working times. This integrated system addresses common problems in obtaining properly dispersed, properly hydrated and isomorphous microcrystals for fixed-orientation and oscillation data collection. Its ease of use, flexibility and optimized performance make it attractive not just for SSX but also for single-crystal and few-crystal data collection. Fundamental concepts that are important in achieving desired crystal distributions on a sample holder via time-varying suction-induced liquid flows are also discussed.

47 OTHER INSTRUMENTATION↗

Microstructural and infiltration properties of woven preforms during chemical vapor infiltration

Interface-resolved direct numerical simulations (DNSs) of chemical vapor infiltration (CVI) have been performed over a range of furnace-operating conditions (Thiele moduli) and for practical woven preform geometries. A level-set method is used to resolve the geometry of the initial preform at tow scale. The interface between the vapor and solid phase is then evolved in time through the entire CVI densification cycle, fully resolving the time-varying topology between the two phases. In contrast to previous level-set methods for CVI simulation, the physical reaction and diffusion processes govern the level-set movement in the current approach. The surface deposition kinetics is described by the usual one-step model. In this paper, the DNS data are used to study the evolving porosity, surface-to-volume ratio, and flow infiltration properties (permeability and effective diffusivities). Additionally, comparisons are made to popularly-assumed structure functions and the standard, Kozeny–Carmen porous media model commonly employed in modeled CFD simulations of CVI. The virtual DNS experiments reveal a Thiele modulus and preform geometry (fabric layup) dependence which the existing microstructural and infiltration models are not able to describe throughout the entire densification process. The DNS-based, woven geometry-specific correlations can be applied directly to mean-field, furnace-scale CFD simulations.

36 MATERIALS SCIENCE↗

Chemical vapor infiltration of additively manufactured preforms: Pore-resolved simulations and experimental validation

The densification of additively manufactured porous preforms by chemical vapor infiltration (CVI) is studied using pore-resolved simulations and experiments. Experimentally, 3D printed silicon carbide (SiC) preforms are subject to CVI synthesis using methyltrichlorosilane (MTS) precursor to obtain high purity SiC/SiC composites. Optical images of the cross sections of the processed preforms are analyzed to obtain the spatial porosity distribution. The numerical method is based on a level set formulation to capture the spatial distribution and time evolution of the pore scale microstructural characteristics. The coupled transport and kinetic effects are represented using a dimensionless Thiele modulus. Simulations are initialized using representative synthetic preform geometries comprising of packed particles based on the size distribution of the powder used for 3D printing. The simulation results are validated against the experimental observations in terms of total density and the distribution of residual porosity. The densification characteristics, porosity classification, concentration profiles, and structure functions are analyzed as functions of processing temperature and Thiele modulus.

36 MATERIALS SCIENCE↗