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At least 577 records · Page 32

Kinetic simulations of collision-less plasmas in open magnetic geometries

Laboratory plasmas in open magnetic geometries can be found in many different applications such as (a) scrape-of-layer (SOL) and divertor regions in toroidal confinement fusion devices, (b) linear divertor simulators, (c) plasma-based thrusters and (d) magnetic mirrors etc. A common feature of these plasma systems is the need to resolve, in addition to velocity space, at least one physical dimension (e.g. along flux lines) to capture the relevant physics. In general, this requires a kinetic treatment. Fully kinetic particle-in-cell (PIC) simulations can be applied but at the expense of large computational effort. A common way to resolve this is to use a hybrid approach: kinetic ions and fluid electrons. In the present work, the development of a hybrid PIC computational tool suitable for open magnetic geometries is described which includes (a) the effect of non-uniform magnetic fields, (b) finite fully-absorbing boundaries for the particles and (c) volumetric particle sources. Analytical expressions for the momentum transport in the paraxial limit are presented with their underlying assumptions and are used to validate the results from the PIC simulations. A general method is described to construct discrete particle distribution functions in a state of mirror-equilibrium. This method is used to obtain the initial state for the PIC simulation. Collisionless simulations in a mirror geometry are performed. The results show that the effect of magnetic compression is correctly described and momentum is conserved. The self-consistent electric field is calculated and is shown to modify the ion velocity distribution function in a manner consistent with analytic theory. Based on this analysis, the ion distribution function is understood in terms of a loss-cone distribution and an isotropic Maxwell-Boltzmann distribution driven by a volumetric plasma source. Finally, the inclusion of a Monte Carlo based Fokker-Planck collision operator is discussed in the context of future work.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Collisionless plasma transport mechanisms in stochastic open magnetic field lines in tokamaks

The collisionless plasma transport in stochastic magnetic fields connecting to wall boundary has been studied to understand the underlying mechanisms of thermal quench physics in tokamak disruption. In this study, we present a comprehensive understanding of the plasma dynamics in three-dimensional stochastic open magnetic field lines, taking into account the consistent coupling of electron and ion dynamics through the ambipolar electric field. The open stochastic field lines act as a 3D magnetic mirror consisting of the magnetic well and hill regions. It was found that the magnetic hill regions play a critical role in enhancing electron thermal transport. When the plasma collapses to the wall, the 3D ambipolar potential arises in the stochastic layer to maintain the quasi-neutrality of the plasma. The E × B vortices induced by the 3D ambipolar potential mix the plasma across stochastic field lines and enhance the radial transport. Particularly, the E × B mixing between the magnetic well and hill regions provides a collisionless detrapping mechanism that plays a major role in the loss of high-energy trapped electrons. As a result, the electron temperature steadily decreases at a rate of about -0.5 keV ms -1 , comparable to the rate observed in thermal quench experiments.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Development and validation of fully open-source R2S shutdown dose rate capabilities in OpenMC *

We present the first fully open-source capabilities for shutdown dose rate (SDR) calculations of fusion energy facilities based on the Rigorous 2-Step (R2S) methodology. These capabilities have been implemented in the OpenMC Monte Carlo particle transport code, building on its existing capabilities while also leveraging new features that have been added to the code to support SDR calculations, such as decay photon source generation. Each of the individual physics components in the R2S workflow—neutron transport, activation, decay photon source generation, and photon transport—have been verified through code-to-code comparisons with MCNP6.2 and FISPACT-II 4.0. These comparisons generally demonstrate excellent agreement between codes for each of the physics components. The full cell-based R2S workflow was validated by performing a simulation of the first experimental campaign from the Frascati Neutron Generator (FNG) ITER dose rate benchmark problem from the Shielding INtegral Benchmark Archive and Database (SINBAD). For short cooling times, the dose calculated by OpenMC agrees with the experimental measurements within the stated experimental uncertainties. For longer cooling times, an overprediction of the shutdown dose was observed relative to experiment, which is consistent with previous studies in the literature. Altogether, these features constitute a combination of capabilities in a single, open-source codebase to provide the fusion community with a readily-accessible option for SDR calculations and a platform for rapidly analyzing the performance of fusion technology.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Divertor heat load estimates on NSTX and DIII-D using new and open-source 2D inversion analysis code

A thermography inversion algorithm has been developed in the open-source Python-based computer code, HYPERION, to calculate the heat flux incident on plasma-facing components (PFCs) in axisymmetric tokamaks. The chosen mesh size at the surface significantly affects the calculated transient heat flux results. The calculated transient heat flux will exceed the real value when the mesh size tends to zero but will underestimate the real value when the mesh size is large. A criterion for determining the appropriate mesh size for the transient heat flux calculation will be discussed. The numerical scheme for HYPERION uses a 2D fully implicit finite-difference approach, allowing temperature-dependent thermal properties of PFC materials. The inversion algorithm is benchmarked against established heat flux calculation codes, TACO and THEODOR, based on thermography data from NSTX and DIII-D respectively. The primary benefits of HYPERION compared to TACO and THEODOR are that it is open-source and it allows for the optimization of mesh thickness along the substrate. The algorithm also accounts for the thermal properties of thin surface layers that characteristically form on PFCs due to plasma-material interactions. The agreement between HYPERION and THEODOR is excellent, as the percent difference between the codes is ~5% on average in the case of the DIII-D data for moderate to high heat flux. Verification tests with TACO show slightly higher average percent differences of 8% and 12%. In using HYPERION to study filaments in heat flux, the initial results indicate that small ELMs filaments significantly broaden the divertor heat flux, and decrease divertor peak flux. Compared to the inter-ELM, the small ELM filaments decrease the divertor peak surface temperature. With intermittent divertor filaments, the divertor heat flux width is comparable with that found in L-mode.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Open Source High Fidelity Modeling of a Type-5 Wind Turbine Drivetrain

The increasing integration of renewable energy resources in evolving bulk power system (BPS) is impacting the system inertia. Type-5 wind turbine generation has the potential to behave like a traditional synchronous generator and can help mitigate the impact on system inertia. A hydraulic torque converter (TC) and gearbox with torque limiting feature are integral parts of a Type-5 wind turbine unit. A high fidelity model of Type-5 wind turbine drivetrain is not openly and widely available for grid integration and transient stability studies. This hinders appropriate assessment of Type-5 wind power plant’s contribution to bulk grid resilience. This work develops and validates a TC model based on those generally used in automobile’s transmission system. Moreover, the concept of torsional coupling is leveraged to integrate the TC and gearbox system dynamics. The entire integrated model will be open sourced and publicly available for grid integration studies.

17 WIND ENERGY↗

Preparing exact eigenstates of the open XXZ chain on a quantum computer

The open spin-1/2 XXZ spin chain with diagonal boundary magnetic fields is the paradigmatic example of a quantum integrable model with open boundary conditions. Here, we formulate a quantum algorithm for preparing Bethe states of this model, corresponding to real solutions of the Bethe equations. The algorithm is probabilistic, with a success probability that decreases with the number of down spins. For a Bethe state of L spins with M down spins, which contains a total of $(^{L}_{M})$ $2^{M} M!$ terms, the algorithm requires L+M 2 +2M qubits.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

A canonical Hamiltonian for open quantum systems

Abstract If an open quantum system is initially uncorrelated from its environment, then its dynamics can be written in terms of a Lindblad-form master equation. The master equation is divided into a unitary piece, represented by an effective Hamiltonian, and a dissipative piece, represented by a hermiticity-preserving superoperator; however, the division of open system dynamics into unitary and dissipative pieces is non-unique. For finite-dimensional quantum systems, we resolve this non-uniqueness by specifying a norm on the space of dissipative superoperators and defining the canonical Hamiltonian to be the one whose dissipator is minimal. We show that the canonical Hamiltonian thus defined is equivalent to the Hamiltonian initially defined by Lindblad, and that it is uniquely specified by requiring the dissipator’s jump operators to be traceless, extending a uniqueness result known previously in the special case of Markovian master equations. For a system weakly coupled to its environment, we give a recursive formula for computing the canonical effective Hamiltonian to arbitrary orders in perturbation theory, which we can think of as a perturbative scheme for renormalizing the system’s bare Hamiltonian.

Physics↗

An open-endcap blade trap for radial-2D ion crystals

We present the design and experimental demonstration of an open-endcap radio frequency trap to confine ion crystals in the radial-two dimensional (2D) structural phase. The central axis of the trap is kept free of obstructions to allow for site-resolved imaging of ions in the 2D crystal plane, and the confining potentials are provided by four segmented blade electrodes. We discuss the design challenges, fabrication techniques, and voltage requirements for implementing this open-endcap trap. Finally, we validate its operation by confining up to 29 ions in a 2D triangular lattice, oriented such that both in-plane principal axes of the 2D crystal lie in the radial direction.

74 ATOMIC AND MOLECULAR PHYSICS↗

Reflections on one million compounds in the open quantum materials database (OQMD)

Abstract Density functional theory (DFT) has been widely applied in modern materials discovery and many materials databases, including the open quantum materials database (OQMD), contain large collections of calculated DFT properties of experimentally known crystal structures and hypothetical predicted compounds. Since the beginning of the OQMD in late 2010, over one million compounds have now been calculated and stored in the database, which is constantly used by worldwide researchers in advancing materials studies. The growth of the OQMD depends on project-based high-throughput DFT calculations, including structure-based projects, property-based projects, and most recently, machine-learning-based projects. Another major goal of the OQMD is to ensure the openness of its materials data to the public and the OQMD developers are constantly working with other materials databases to reach a universal querying protocol in support of the FAIR data principles.

08 HYDROGEN↗

An open-source high-content analysis workflow for CFTR function measurements using the forskolin-induced swelling assay

Abstract Motivation The forskolin-induced swelling (FIS) assay has become the preferential assay to predict the efficacy of approved and investigational CFTR-modulating drugs for individuals with cystic fibrosis (CF). Currently, no standardized quantification method of FIS data exists thereby hampering inter-laboratory reproducibility. Results We developed a complete open-source workflow for standardized high-content analysis of CFTR function measurements in intestinal organoids using raw microscopy images as input. The workflow includes tools for (i) file and metadata handling; (ii) image quantification and (iii) statistical analysis. Our workflow reproduced results generated by published proprietary analysis protocols and enables standardized CFTR function measurements in CF organoids. Availability and implementation All workflow components are open-source and freely available: the htmrenamer R package for file handling https://github.com/hmbotelho/htmrenamer; CellProfiler and ImageJ analysis scripts/pipelines https://github.com/hmbotelho/FIS_image_analysis; the Organoid Analyst application for statistical analysis https://github.com/hmbotelho/organoid_analyst; detailed usage instructions and a demonstration dataset https://github.com/hmbotelho/FIS_analysis. Distributed under GPL v3.0. Supplementary information Supplementary data are available at Bioinformatics online.

Hagemeijer, Marne C.↗

OpenMDlr: parallel, open-source tools for general protein structure modeling and refinement from pairwise distances

Easy-to-use, open-source, general-purpose programs for modeling a protein structure from inter-atomic distances are needed for modeling from experimental data and refinement of predicted protein structures. OpenMDlr is an open-source Python package for modeling protein structures from pairwise distances between any atoms, and optionally, dihedral angles. Finally, we provide a user-friendly input format for harnessing modern biomolecular force fields in an easy-to-install package that can efficiently make use of multiple compute cores.

59 BASIC BIOLOGICAL SCIENCES↗

Measurement of inclusive electrons from open heavy-flavor hadron decays in p + p collisions at s = 200 GeV with the STAR detector

We report a new measurement of the production cross section for inclusive electrons from open heavy-flavor hadron decays as a function of transverse momentum (p T ) at midrapidity (|y| < 0.7) in p + p collisions at √s = 200 GeV. Overall, the result is presented for 2.5 < P T < 10 GeV/c with an improved precision above 6 GeV/c with respect to the previous measurements, providing more constraints on perturbative QCD calculations. Moreover, this measurement also provides a high-precision reference for measurements of nuclear modification factors for inclusive electrons from open-charm and -bottom hadron decays in heavy-ion collisions.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

End-to-end jet classification of boosted top quarks with the CMS open data

Here we describe a novel application of the end-to-end deep learning technique to the task of discriminating top quark-initiated jets from those originating from the hadronization of a light quark or a gluon. The end-to-end deep learning technique uses low-level detector representation of high-energy collision event as inputs to deep learning algorithms. In this study, we use low-level detector information from the simulated Compact Muon Solenoid (CMS) open data samples to construct the top jet classifiers. To optimize classifier performance we progressively add low-level information from the CMS tracking detector, including pixel detector reconstructed hits and impact parameters, and demonstrate the value of additional tracking information even when no new spatial structures are added. Relying only on calorimeter energy deposits and reconstructed pixel detector hits, the end-to-end classifier achieves an area under the receiver operator curve (AUC) score of 0.975 ± 0.002 for the task of classifying boosted top quark jets. After adding derived track quantities, the classifier AUC score increases to 0.9824 ± 0.0013, serving as the first performance benchmark for these CMS open data samples.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Generalized hydrodynamic analysis of transport through a finite open nanopore for two-component single-file systems

Single-file diffusion (SFD) in finite open nanopores is characterized by nonzero spatially varying tracer diffusion coefficients within a generalized hydrodynamic description. This contrasts with infinite SFD systems where tracer diffusivity vanishes. In standard tracer counterpermeation (TCP) analysis, two reservoirs, each containing a different species, are connected to opposite ends of a finite pore. Here, we implement an extended TCP analysis to allow the two reservoirs to contain slightly different mixtures of the two species. Then, determination of diffusion fluxes through the pore allows extraction of diffusion coefficients for near-constant partial concentrations of the two species. This analysis is applied for a lattice-gas model describing two-component SFD through a finite linear pore represented by a one-dimensional array of cells. Two types of particles, A and B, can hop only to adjacent empty cells with generally different rates, $h_A$ and $h_B$. Particles are noninteracting other than exclusion of multiple cell occupancy. Results reveal generalized hydrodynamic tracer diffusion coefficients which adopt small values inversely proportional to pore length in the pore center, but which are strongly enhanced near pore openings.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Quantum Jarzynski Equality in Open Quantum Systems from the One-Time Measurement Scheme

In open quantum systems, a clear distinction between work and heat is often challenging, and extending the quantum Jarzynski equality to systems evolving under general quantum channels beyond unitality remains an open problem in quantum thermodynamics. In this Letter, we introduce well-defined notions of guessed quantum heat and guessed quantum work, by exploiting the one-time measurement scheme, which only requires an initial energy measurement on the system alone. We derive a modified quantum Jarzynski equality and the principle of maximum work with respect to the guessed quantum work, which requires the knowledge of the system only. We further show the significance of guessed quantum heat and work by linking them to the problem of quantum hypothesis testing.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Symmetry Breaking and Error Correction in Open Quantum Systems

Symmetry-breaking transitions are a well-understood phenomenon of closed quantum systems in quantum optics, condensed matter, and high energy physics. However, symmetry breaking in open systems is less thoroughly understood, in part due to the richer steady-state and symmetry structure that such systems possess. For the prototypical open system—a Lindbladian—a unitary symmetry can be imposed in a “weak” or a “strong” way. We characterize the possible $\mathbb{Z}_n$ symmetry-breaking transitions for both cases. In the case of $\mathbb{Z}_2$, a weak-symmetry-broken phase guarantees at most a classical bit steady-state structure, while a strong-symmetry-broken phase admits a partially protected steady-state qubit. Viewing photonic cat qubits through the lens of strong-symmetry breaking, we show how to dynamically recover the logical information after any gap-preserving strong-symmetric error; such recovery becomes perfect exponentially quickly in the number of photons. Further, our study forges a connection between driven-dissipative phase transitions and error correction.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Accuracy Guarantees and Quantum Advantage in Analog Open Quantum Simulation with and without Noise

Many-body open quantum systems, described by Lindbladian master equations, are a rich class of physical models that display complex equilibrium and out-of-equilibrium phenomena which remain to be understood. In this paper, we theoretically analyze noisy analog quantum simulation of geometrically local open quantum systems and provide evidence that this problem both is hard to simulate on classical computers and could be approximately solved on near-term quantum devices. First, given a noiseless quantum simulator, we show that the dynamics of local observables and the fixed-point expectation values of rapidly mixing local observables in geometrically local Lindbladians can be obtained to a precision of ϵ in time that is poly ( ϵ − 1 ) and uniform in system size. Furthermore, we establish that the quantum simulator would provide a superpolynomial advantage, in run-time scaling with respect to the target precision and either the evolution time (when simulating dynamics) or the Lindbladian’s decay rate (when simulating fixed points), over any classical algorithm for these problems, assuming BQP ≠ BPP . We then consider the presence of noise in the quantum simulator in the form of additional geometrically local Lindbladian terms. We show that the simulation tasks considered in this paper are stable to errors; i.e., they can be solved to a noise-limited, but system-size independent, precision. Finally, we establish that, assuming BQP ≠ BPP , there are stable geometrically local Lindbladian simulation problems such that, as the noise rate on the simulator is reduced, classical algorithms must take time superpolynomially longer in the inverse noise rate to attain the same precision as the analog quantum simulator. Published by the American Physical Society 2025

Kashyap, Vikram (ORCID:0000000208195207)↗

Open system approach to neutrinos propagating in an ultralight scalar background

We examine decoherence in neutrino oscillations induced by an ultralight scalar field coupled to neutrinos. The scalar induces time- and position-dependent shifts in the neutrino mass matrix. Neutrinos sample different field configurations throughout an experimental data-taking period, which leads to damping effects in the oscillation pattern in the form of decoherence. By recasting the neutrino-scalar dynamics within the open quantum systems framework, we establish a mapping between a complete model and phenomenological decoherence approaches. We find that the parameter driving decoherence scales as L 2 / E 2 , where L is the baseline and E is the neutrino energy, as opposed to L / E typically assumed in phenomenological studies of open system approaches to neutrino oscillations.

F.T. Airoldi, Lua [Sao Paulo U.; Fermilab] (ORCID:↗